Gene detail

Detailed information of PFX27973.1 in Stylophora pistillata

Genomic Location: Spis.scaffold92:91861...108635
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Calb2

ATGGCGTCCTGGATAGCGAAGCCATGGATCGAGAAAGCTTTGATGAGCACAGATTCGAACAATTTACCCAAAATTGCCAGGGCGCAAGTCATCAAGCTTGAAGAAACTTGCAAAAGTGTGGCATTTATCAGCGACAAGAAACTTTTTGTGAAAGCTTTGTTCTCAACACCAGCTATTGAGCAATTTCAAAGGGACAATTCTAGCCTTTCTCTACCTGACATCCAAGGTGGACTTATATTTATTAAGAAATACTCTGTGCAAGTTTTTACAGAAAAAGAGTTGGGTGATGCTGAATTTTTTATCGACATTCACCACTTTAAGTTTGCTGGAGGAGAAGGTAACACTCAGTTTGGGGGAAATATTATAGACGCTTCAACGTATCCTCCGCTACAGCAGAGATTGAGGGCGCTCTGGTGGGATACACAGCTTAGAACTCTCCTAGACAATGGACGTTCTTGTCAAGAATTACACAAGACTCTGCTGAGGAGCCATGAAAAGGTCTTTGTTCCAGATGAAATGGAAAAGAAACTAGCAGAGATTCCAGAATGGAAGGCAAGTTACTACCCCCCTCAGTCCTATCATATAGATAGCGAACTTTTTTCCTGTGGTCAAGAATCATCATCATTCACGAGACTGTCAGACTCCCTCGAAGCTGTTGAGGACAACACAACAAAACTTGAAACTAGAGACATTCTGGCCTCTCAGTCAGAACGAGATGGGCGGACAGGGGTGCAGTTGGTTGGAAAACAGGATTCGAGTGAAATGAGTGGATGTGGTCTTGTTTCGGTGATCCGTGAAAATGAGATTTCCAATACTACTGATAAAGTTGAAATTAATGAGCAGGTTAAGTCTGTGGTAGAAAAATCAAATATAATAGAAAAAGAAGAAAAAGCTAAGGGAAGCGACAAAACTGAGTGTTGTCTACAGGAAGAAGAAAGGGCACCATCGGTGGGTAGTAGCTCAAATTATGTCCCTTCCTCTCAAACTCATGCGCATGTAGTCACCGCTCAACCTTTGGAAGGGCTGATACCTGAGGAGCTGTTTTTGTCTTGGAGTGAAGGTTCACAGCCGAGGGAAAGCAGCGAAGAATCGTACTCCATTTTGCATGGGGGATCTGCTGCCGGCGAGGAGGACGAGGATGTAACTTTTGTGCCTTCGAGCCAAAATAGCCATGAGTTCGACCCAGCACCACAACTTCTCCTGATAACGCCAGGGCGATCCCAACGTGGCTGCTCGCTATCAGAGTCGCAGTTGGAGAAATTTTTTGAAAATAGCGTTTCTTTTGATCAAGTCACCACACCACCCGGGTTATCAGATGTTCTTTCTCCAACTCCAGAGTGTTACACTAAGATAAAACCTCAGAATGTGTCTCTAAATTTGGGAGGCCAAAAGAATACTGTAGGTAGCACAAACTCTCACGAATTCACCATTTCGCCCTCGTGGAGAAACTCTGTCAGCAATACTTTGACTGGCAAGCAGCCCATCCGGATAAACACCAATGTTGAATTTGATATTTTGTACTCTCAAAACACTTGGAGTTTATCTCAACCATTTACACAAGAATTTAGTGCTGATTTAATTGAAATTAACAAACGCCAGTCAATAAAAAGGAGACATTCTGAGACTCAAGATCATTCACGCAAGACATGCTTATTATATGGAAATAAGCGAGACAAAGACGTCTTTTATGGTGGCACTCCTGTTAGTCCAAATAGCACATTATTCTCAGTTAAACGTAGTCAGGCTGGTACCTCTCAAAGTCAGCAAAACGACAACTCTTTTACTACTTCTCTGGTCAAACCTACTTCCCTGTACTCACAACAGGATCCTTTGGTTCTTGACACGTCAGGATCAACAGAGGGTAACAAGTCGTCTGAAGAAGAAGAACTTCACACGTTAAGAACTCCGGCGTTTGACTCCCTTCCATCTTTTCAAATTCCAGTCGAAAAGGGCAAACCACTCCATCAAGAGGGCGAGTCATTACACCTGTCTCAGGCACTCAGACGCAAATTTGAATTTTATCTGTGGGAGAGACCAGCGCTTCAGCACGCATGCGTCAGGCTTGTACACAACATTAAAGATCGCTTCTCATTCAGAGCGAATGTTATTTTGATCTTGCGGGCAGTCAACATGGAGGCCGGTAAAGATGCTTGTATGCTACAATTTAACAGCGACACGAAACTAACTTCAGAAGAGTTCGTGAAAGTCTTCAAGGAATTTGACAAAGACGGGAATGGTTACATAGAGGCAGACGAGCTGAATATGTTTTTGGTAACTCTCCTGCAGGAGACAGGCAACGAGACACCATCACCAGAGGAACTTGAGAAATTCAAGGAGTATGTGCTAGAAAAGTATGACGAGAATTGTGACGGCAAAATAAGTATGGATGAGCTCGAGAACATTCTTCCTACAGAGGAAAACTACTTGAAGCAATTTCGAGCAGAGTTCTCATCTTAG

Transcript

rna-Spis7300_mrna

ATGGCGTCCTGGATAGCGAAGCCATGGATCGAGAAAGCTTTGATGAGCACAGATTCGAACAATTTACCCAAAATTGCCAGGGCGCAAGTCATCAAGCTTGAAGAAACTTGCAAAAGTGTGGCATTTATCAGCGACAAGAAACTTTTTGTGAAAGCTTTGTTCTCAACACCAGCTATTGAGCAATTTCAAAGGGACAATTCTAGCCTTTCTCTACCTGACATCCAAGGTGGACTTATATTTATTAAGAAATACTCTGTGCAAGTTTTTACAGAAAAAGAGTTGGGTGATGCTGAATTTTTTATCGACATTCACCACTTTAAGTTTGCTGGAGGAGAAGGTAACACTCAGTTTGGGGGAAATATTATAGACGCTTCAACGTATCCTCCGCTACAGCAGAGATTGAGGGCGCTCTGGTGGGATACACAGCTTAGAACTCTCCTAGACAATGGACGTTCTTGTCAAGAATTACACAAGACTCTGCTGAGGAGCCATGAAAAGGTCTTTGTTCCagatgaaatggaaaagaaactagCAGAGATTCCAGAATGGAAGGCAAGTTACTACCCCCCTCAGTCCTATCATATAGATAGCGAACTTTTTTCCTGTGGTCAAGAATCATCATCATTCACGAGACTGTCAGACTCCCTCGAAGCTGTTGAGgacaacacaacaaaacttgAAACTAGAGACATTCTGGCCTCTCAGTCAGAACGAGATGGGCGGACAGGGGTGCAGTTGGTTGGAAAACAGGATTCGAGTGAAATGAGTGGATGTGGTCTTGTTTCGGTGATCCGTGAAAATGAGATTTCCAATACTACTGATAAAGTTGAAATTAATGAGCAGGTTAAGTCTGTGGTAGAAAAATCAAATATaatagaaaaagaagaaaaagctaagGGAAGCGACAAAACTGAGTGTTGTCTACAGGAAGAAGAAAGGGCACCATCGGTGGGTAGTAGCTCAAATTATGTCCCTTCCTCTCAAACTCATGCGCATGTAGTCACCGCTCAACCTTTGGAAGGGCTGATACCTGAGGAGCTGTTTTTGTCTTGGAGTGAAGGTTCACAGCCGAGGGAAAGCAGCGAAGAATCGTACTCCATTTTGCATGGGGGATCTGCTGCCGGCGAGGAGGACGAGGATGTAACTTTTGTGCCTTCGAGCCAAAATAGCCATGAGTTCGACCCAGCACCACAACTTCTCCTGATAACGCCAGGGCGATCCCAACGTGGCTGCTCGCTATCAGAGTCGCAGttggagaaattttttgaaaatagcgTTTCTTTTGATCAAGTCACCACACCACCCGGGTTATCAGATGTTCTTTCTCCAACTCCAGAGTGTTACACTAAGATAAAACCTCAGAATGTGTCTCTAAATTTGGGAGGCCAAAAGAATACTGTAGGTAGCACAAACTCTCACGAATTCACCATTTCGCCCTCGTGGAGAAACTCTGTCAGCAATACTTTGACTGGCAAGCAGCCCATCCGGATAAACACCAATGttgaatttgatattttgtacTCTCAAAACACTTGGAGTTTATCTCAACCATTTACACAAGAATTTAGTGCtgatttaattgaaattaacaAACGCCAGTCAATAAAAAGGAGACATTCTGAGACTCAAGATCATTCACGCAAGACATGCTTATTATATGGAAATAAGCGAGACAAAGACGTCTTTTATGGTGGCACTCCTGTTAGTCCAAATAGCACATTATTCTCAGTTAAACGTAGTCAGGCTGGTACCTCTCAAAGTCAGCAAAACGACAACTCTTTTACTACTTCTCTGGTCAAACCTACTTCCCTGTACTCACAACAGGATCCTTTGGTTCTTGACACGTCAGGATCAACAGAGGGTAACAAGTCGTCTGAAGAAGAAGAACTTCACACGTTAAGAACTCCGGCGTTTGACTCCCTTCCATCTTTTCAAATTCCAGTCGAAAAGGGCAAACCACTCCATCAAGAGGGCGagTCATTACACCTGTCTCAGGCACTCAGAcgcaaatttgaattttatctgTGGGAGAGACCAGCGCTTCAGCACGCATGCGTCAGGCTTGTACACAACATTAAAGATCGCTTCTCATTCAGAGCGAATGTTATTTTGATCTTGCGGGCAGTCAACATGGAGGCCGGTAAAGATGCTTGTATGCTACAATTTAACAGCGACACGAAACTAACTTCAGAAGAGTTCGTGAAAGTCTTCAAGGAATTTGACAAAGACGggaaTGGTTACATAGAGGCAGACGAGCTGAATATGTTTTTGGTAACtctcctgcaggagacaggcAACGAGACACCATCACCAGAGGAACTTGAGAAATTCAAGGAGTATGTGCTAGAAAAGTATGACGAGAATTGTGACGGCAAAATAAGTATGGATGAGcTCGAGAACATTCTTCCTACAGAGGAAAACTACTTGAAGCAATTTCGAGCAGAGTTCTCATCTTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF10341 all species →	TPP1	Shelterin complex subunit, TPP1/ACD	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR019437 all species →	Domain	Shelterin complex subunit TPP1/Est3	Interproscan
IPR051001 all species →	Family	Calbindin Calcium-Binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19972 all species →	CALBINDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0000781 all species →	Cellular Component	chromosome, telomeric region	Interproscan
GO:0005697 all species →	Cellular Component	telomerase holoenzyme complex	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0051973 all species →	Biological Process	obsolete positive regulation of telomerase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0051480 all species →	Biological Process	regulation of cytosolic calcium ion concentration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX27973.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.