Gene detail

Detailed information of PFX28120.1 in Stylophora pistillata

Genomic Location: Spis.scaffold89:408832...420703
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis7156_mrna

CAAAGAACGAGGAACTTTCGCTGCGTAGTTCAAAACTTCGAAATGGTGTTCTTTGAAACTTGTGGGCCAAATGAGGCCATGGTTGTTTCAGGGGTTTGTCACCGTAAATCAGCATTGGTTTCTGGTGGTCGAATATTCGTGTGGCCCTTTATTCAAAAGCTGCAAAAGATCTCTCTCAACACAATGACATTGAATGTGGAATCCCCACGTGTTTACACAAGGCATGGAGTGCCAATTTCAGTGACAGGAATAGCTCAAGTAAAGATTCAAGGCCAAAATCAGGAAATGTTATATGCAGCCTGTCAGCAGTTTTTGGGAAAAACTCAAGAACAAGTGCGTGCTGTTGCCTTGGAAACACTGGAAGGTCATCAAAGAGCTATCATGGGTACCATGACAGTGGAGGAAATCTATAAAGATCGAAAGAAGTTCTCAAAAAGTGTGTTTGAGGTGGCATCCTCTGATTTGGTCAACATGGGAGTCAGTGTTGTAAGCTACACCATAAAGGACATTCGAGATGATGAAGGATATCTGCTTGCCCTTGGTATGGCTAGGACTGCACAAGTTAAGAGAGATGCCAGAATTGGTGAGGCTGAAGCTAAGAGAGATTCTGGAATTAAGGAAGCTCTGGCAGAGGAGGCAAGGCAGAGGGCCAAATATGAGAATGATACAGAGATTGCTAAAGCCAAGAGAGATTATGAGTTAAAGAAGGCTGCATATGATATTGAAGTTCAAACCAAAAAAGCAGAGTCTGAGTTGGCATATGACCTCCAGGCTTCcataacaaaacagaaaatcaaGGAAGAAGAAATGCAGATCAGAGTTGTGGAGAGAGCACAGCAGATCAATGTTCAAGAGCAGGAAATTGCACGGAAGGACCGTGAACTTGAAGCTACCATCAAACGGCCAGCTGAAGCAGACAAGTATAAAATGGAGAAGCTTGCTGAGGCCAACCGaaatcgTGTGATACTGGAAGCTGAGGCCAGTGCAGAAGCAATAAGGGTGAAAGGTGAAGCTGAAGCTTTTGCCATTGAAGCAAAAGCTAAAGCAGAAGCTGAACAGATGGCCAAGAAAGCAGATGCTTGGAAAGAGTACAGAGAAGCTGCTGTTGTTGATATGGTTCTGGCAACCATGCCAAAGATTGCAGCTGAAGTGGCAGCACCTCTCGCTCAGTGTAAGAAGATTGTCATGGTATCTAATGGAAAGTGTGAACTTGGTGCCAGTAAAATCACTGGTGAAATCCTAGATATTGTTGCCAATCTGCCAAAATCTGTGGAGGCACTAACTGGTATTGATATCAGCAAGgcaatGAAGCTGACTAATAGGGTGTAATCATGAAGGTGGCTCACCCTCTTCCACCTTCAAAATGATTTATTGCAAATAATACATAAAGCTGTTGCTTGTTGTTAGTTGTAGCCCCAAGGTTTATCTGGTGCTAACTATAGACAGATTGTATATGACCAAAGTGTAACTGTGAAAAAGTCTTTGTTGCTATATAGTGTGTTAGGTCACGGTGGACGAGATTGCCTTCTAGTTAGGGTTCAGTTCTTGTAATGTTTATCAGATGCTGTTTTTCATGTGAACACAAGAAAGTTTTGTTCTCgccttattaaaaaaattgaatttgtacttgcatatatatacatacaagAGGCCATGTTGGTCATATTCAAATTTgagttgtagtttttttcttttttaacatcaAGGGTGTATAACCTTTGAAGAGGAGCACAGCTGCAATCATCTGTGTCTAAGAGTCTAAAGCCTTGCCTTTGTTCACTAGTGCTGTTCTTCTTTTAAGGAATTTGACTTTTAGTCGAAACCTTAAAGTTATTGAATTTCGTTTTTCTCAGAGAAAGGAGGGTTTTCACTGAATGAACAAGGCTGGAAAGTAATGCCCTGATTGCTTTCTGATTTGGTCATCTTTGGGAAGTCGTCAGAAGAATTTTTGTTGGTATATTAATGTCTTGTTATTCTTTTGTTGTGATGGAACTTGGCATTCATGTCCAGAGGGAGACATGCAGTCTTAACAGTAACTTCATGTACTAAGGTAGAGTGTTGTGTAGTAATACAAACTGTTGTGTCAGTGTATGCTAAATGTGCGGCCTGTCTTGTtattaaataaaactgaaagCTCCCCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01145 all species →	Band_7	SPFH domain / Band 7 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan
IPR027705 all species →	Family	Flotillin family	Interproscan
IPR001107 all species →	Domain	Band 7 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13806 all species →	FLOTILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002090 all species →	Biological Process	regulation of receptor internalization	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016600 all species →	Cellular Component	flotillin complex	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0045807 all species →	Biological Process	positive regulation of endocytosis	Interproscan
GO:0070528 all species →	Biological Process	protein kinase C signaling	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan
GO:1901890 all species →	Biological Process	positive regulation of cell junction assembly	Interproscan
GO:2000049 all species →	Biological Process	positive regulation of cell-cell adhesion mediated by cadherin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07192	FLOT; flotillin	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.