Gene detail

Detailed information of PFX28279.1 in Stylophora pistillata

Genomic Location: Spis.scaffold86:454637...464518
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis6992_mrna

TCTTGTTTGGAGGGTTGTTCTAAGAGCAATTGTTTTTTACGGCTTTAGCGGTCAATTAACTCAGCAGCTGGTCCTCTTGATTTACATAAGAGCATTTGGAAGACCAATTGTACTGAAGAATACACAACGTCCGGCACGTTCGCGAAAGATCGGATGCCACGAATTCGTGTCAAGCACGGAGAGGCACACTGTAAAGTCgattaatttttattgattcaAGTGTGCTTTATTGGCAAGCATTGGTGTTTCGAGTTTCGAATGCAAATCACATCTGTGGTAATCATTTGGAATCGTTCAACCCGAGCGGTTTCTAAGTACGTCGACGCAACAACTTTGCCAAGATAAGGACCAAGTCGCCGGCTTTTTGgtcataaattatttttgaattCTATCATTTGCCGTGGACTGTTGCGGTTTTATGCAAAAATATTGGCCTCTATTAATATAGCATGAGCAGCATTTCGGATTAATTCACGCCACAGTGTTGTTGACAGAAGTGAGACGACTTTTGCTGTTTTAATTTACTTTAGTTCCAGTAACGTCCCTTTGGCGACTTCTAAATGACTGAGGTCCTCTCTGATTCAAAGTATTTATCGCCAGAAGCGATATTCCAACGAGCCTCCAGTGAACCCGATATATTTGGTACGGCTGTACGGCAAAGAACATGTAGCAATGCTTCTCAGTTGCAATACAATAGAGCAAGGGAGCGATCGAGAGCTTCGTTTACAAATGGAGAAAGATCTCGTTCGCCATCCCCAAATGGTAGTGATTCTGAGGGTCAGATGGTTGTCGACGGAAGtacaCTGAATGAAAGTTTCAACAGTGCAGACTTTACCTTCAGGGACCGTGCACCAACATCACCAAGTAGAGAGGAGGTGAAGGCACAGGCTTTTGAACGACTTCAAGAGGAGCTTAAGAAAGCTCAAGAGGAGCTCAAACTGAAAGACGAACAATGTGAAAAACTATCAAGAGTAAGAAATCAATTGGAATCAGAGTTAGAAGAACTGACAGCAAGTCTGTTTCAGGAGGCTCATGCTATGGTTCGTGCAGCAAATGTTAAAAGGGCTGCAGCAGAAAAGAGGTTCAAAGAAGCAAATAACAAGGTTGAAGTCCTTCAAGCAGAAGTGTCTGCTCTCAAACAGTTAGTGTTAACCTCCACATCATCACGGGGTCATTCTAGTGGAATCAGCTGGCGACGACACAGTGATGAACACCTCAGCCCATGTCCAGATTGCAACTCATACAATTGTGATGCTGCTGTAACAAGGTTAAATGGAACATGTTTGCATGGGTCACAAAATGGAAATGATCCCCCTTCAGATGAATCAGAGGTGGATGTGATCCTTTTCCGAGAATTTTTACAATGGATGGATGAACGTTCTGTTTCACATGATCAGCCATTTTTAGCCAGAATTTACAAAGAAGATGTTGGACCATGTTTAGATTTTCCTAATAAGGAGCTTGCATTAGCTGTACACAGTGCTATTGAAAACAATACTTTAATGATGGAGACATTTAGTGGCAAACCAGTGTTCAGGAAGTGCGCGCTCACAGGAACGTCTCGATTTTGTCTTCATCGTGTGAAGTTATCAGAAAAAGGTGACTGGTATAACCTGAGTCGCAACAGTAGAGTCAGGATTGTAGCAGTCTGTGACTTTTACACTTATATGCGGTACATCCAGCAAGGACTGGTGAAGGCAGACGTAACCGAGATATACTGGGAGCTAATGAGATTGAGGAGTAAGATGGCACTCGCGCGGTTCGGAATGGAGGGCACAGTCAAGATTCAAAGGAGCAGTGGTCACTCATAGCAACGCATGCTCTCTGGTTGAGATATCTTACGGGATCCGTAAGTTTTATATCAGGGCTCAGACAAAAgtaaaattgtattttcatgTGAAGTGACTAAGCATACTGTGACTCTGAGCAGCTGTTAGGAAGCAATgtggaaatgaattttactgAGTGGTCCTAATAAAAATGAGTCGCTAAAGACTTCAACAGAATTTGTAAGACttcaatatttcaattattGAAATTATCAAAGTATTTATGCTTGCATTTTGTGTTAATGTAATTGAATACGTCATTTAAGGAGTTACAAAGTTAGCAAAATTCGCAAATTTGTGTAGGGAGTCTTTTTATTCACTCAAGCAAAATtactcaaattttaaaatattttcaagtgtAGAATTTGTGATTTTTATCGCCAAAGGACGGTGCTCGCGTGGGGATATTTCATTTAGAATCAAGTTATTTAACGTATTCTTGTAAAATCAGtgtgtattattattttagagcACTGGTATTACATATTACTCCATCACTGACAGAGATTGATGGACAAGAATTCTTAGAAACTTTGAAAGGTGGATTTTCACGAACGAGAGGTTTTCTTAGAGTTGTCGTGCGATTTTAATGAGTGATGTTGAATTTGAGGCCAGgaaatgaatatatatatataaataactcatcaaacaattttcttaagataattttttatcagtagtttctatttttctatGAGGAGGCCCTTCAGTCTCATTTGTACATAATGACAGAATCTTTTGATGATTTATCCAAAAGAAATAAACCTTCAAGCTTGACGTTGTAGTCAATGTACATGTTTGTTTATGTCTAAGTTACTAATAAGTAGTCCGGTTGGTATATTTTTGTTGACTAAATATTGTTGCTGTTATCGTTGTTGTATTTTAGACAAGCTTCAGAGTTCTGCATTTACTTTTCAGTGTGCAGACCTTCCAATATACACAGTAGAAATCTTAACTCTCTCTTTTTGGGTTCCtgtctttgaaattttcttccGTAATAAAAGATGCTGTATTTGTGGCCAGCGTAGAACGAAGTAAAAATGCGAGTTCTCGCAAGTACTCGAACCTTAGACTGTTCTGATTGTCTCACCTGAGGCACC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06428 all species →	Sec2p	GDP/GTP exchange factor Sec2p	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040351 all species →	Family	Guanine nucleotide exchange factor RAB3IL/RAB3IP/Sec2	Interproscan
IPR009449 all species →	Domain	GDP/GTP exchange factor Sec2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14430 all species →	RABIN3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0070319 all species →	Cellular Component	Golgi to plasma membrane transport vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16779	RAB3IP, RABIN8; Rab-3A-interacting protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.