Gene detail

Detailed information of PFX28311.1 in Stylophora pistillata

Genomic Location: Spis.scaffold86:358964...364710
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis6981_mrna

CTATTCTTCTCAGCTGTTGCACAAAAGCAGGTACTTGAGCTTTCCGCACTACCGTCCTGTTCAGCGAGAAATCTTTCATCTCATCCTTTCCAATTTTCTTGCGTGATGTTCGCTTCGCATAGACCTCGAGTTTTTCGTTCGCGTCTCGGGTGTTGCATCTGCGGCGCTAAGTCTTCGAGCTCAAGATTCACGTCTTCGTCAAAATATGAGTTGTTGTTTAGCGGTTGCTTTCAATTGAATGAAAAGAGGCAAGGAGAGATTTGCAATGCCTGTGTACTTCTGGTCAAACGGTGGAAGAAACTTCCCTCAGGCAGTTCGAAGAATTGGAAGCATgTCGTAGATAGTAAAGCAACAGTGAAAAGAACTATGAAGCCAAGAAGAAGTTCGAGGAATTCTATGACAGTGGAAAACGGAAACGAAGTAACTTCCACAATGAATGGCACTAGAGCAACAAGTGGTCGTAGCGCGAGTTGCGGTGGACAAGAAACTCGAGATAATGATGAAATTGAAACAGATAGTGGGGAGATGTCACCCACCTTGATCTGTGGCTCACCCAGTCCTAGTCCTAGTGATGTGTCAGATGATTTGTCGTCAGGTTCAATGACCACCTCTTCACAACCAGTACGCCAAGTGTCAACAGCTTCACAAACATCTTTTCTGTTCCCATCCCTTACCTCTTCAGCAAATGATAAGCTACCATTCATTGACCTGTCAATGTGGCGGCGTGAAGAAATCTGTTGTGGCACGATATTCAGAGGGCCTCACGGTGAGGTCCTTGTAGACCCTAAACTTCTGAACCCTGTGTGCACGTGCTCCTGTAGTGCTAGGCCCCCTGTACATGTTGCTGAAACGAATAGTGTCAAGTAGAAACTATATAGTGCTGTAGACTGAAAAGTCTGTGTAGAGAATTGCTTCCAATTCTGTTTGTGACAGAGGCCTTTAGCACATGTACAGATGACATAGCAAATGTGgtctaattttattttaagacaatTGAATGCAAGGTATGCCATAGTTCCTAAGTCCTAAAAACTTAGAGCtgaaattaaaaatcttttgTGACATCATAACAAATTGCATTTTTGAAGGTAAGACTAGAATTAACTTGTATCGTCATAGCCTTAAAATGAGTCCAGTGCTATCATTATTTCCAAAGCTTGAGAATTATTATCTTATGGTTCATGCATGAAATATTCTAGACCGCTTTTTTTCATTACTAATTTTACGTCAATCTGGGTATTGTTGGAATTTTTATGTTCATTGAtttgttagttttcttttttgttattttgatattttgtctaAATATTTGTATATCGTTAGAACTTTTGCATTGGaaggttttttacatttttgtttgcTTACCTTCTTCAGCAGTctcattctttttttatgaCTGCTTACAGAGCAAAACTGAATCGCCCTATTTTCCTAGTATAATAACTGTTATCTGGTGTACTTAAAGTCGTGTTTCATTCTTAAGGAAATTGCTATGTGAAAAACTTTAATGGACTGGACTTTACGCACATACTCACAGAGGATGCAAACATACGTTGACTGTTCTGTGTCTGCTTCTGAAATTAAACCCATTTAcctccaagatctgattgtcaatttcTCCTCTCTAGCAACAGAGCCCAGTACTACATATTATCTTATAAattagtcacaagaatttgttgttagataaGATAACAATGTGTGCCTGTTACTTTGGAGTATTCTCaatacctgtttgctagataagtATGAATATGCTAGGGAGAGgttatatgttaatcactttgAGAGTtgcacagttttaaaaaaacatgattACTTATCTAAGGTTTAGGCATAGGTTGATGAAGTGAACTGCTTTTCACTTTGCATGTCAGTAGTCTGTTGATCAGAGATGTCAAGGTGAATGCAGTTCATTATTCATTGCCCCTGGCAAGCTCTTTCACATGTTGCTATAATCATCAAAGTATAGTATAGTTTCACAGAGAGAGCCAACCAAATCCAGTTTAGATTGCCTGATTGTACTTATACATGCATGTACCCGACAGTTTTCTTTGTGCTGTGCCTTAGCCCTTTCATGTCAAGGATCTATATACCAACTTTTAGGACTTCGCATGTATTACGTATACTTTTAGATGTAAGTATTTCGTATTTAATCAAAGATATTCCCAAGAATGTAATTCCAATGTATTCCAAATTGGAACATCTAGTTAGCTGAAAAAATTCATGTTAGGACGTTCAGgtggtgaaagggttaaataagCCATCAAAATCATTGGACATATTCCAAATatcaataatttaaaagttaaattatcaacaaagttgctAAAAATCCATTCTTAACAGAAACTGAGTACTCCTACCTGGAGATAATTCTTGATCATCGATTGTTATTATTTGCACTTGCTATCAATATccacttttttttatattgaaacTCATTTGTTGTAGCAGTTGTTGTGGTATAATTGTGGAAGTTTGCTGCAATTTTTCCATCTTTGTACATAGTTAAACAGTCAGGTTAGATTTTTAATAGTGTACATAGTGCTGTGACCTGCTTTCATGTTAATAGTCATGGAGTGGGCTTCTTAGGATTATTGAAGGTAATTTTTAAATTGGAGGATAAATCTTACCATAATAACTAGGAAGTTAAAATGACAGAAATTGAAGAACATTTCCAGACTTTGAAAAAACCAGTAGGTGCAGATCATCTTCCAAATCCCTTTGTTATCACTACTGACAGTGTATCAGTATCAGCGATAATGCCTCAGACAGACTTGGCAATTGTGATACAGGGcacgacactaacggtagcccactagccacagactagtagaaatt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15396 all species →	FAM60A	Protein Family FAM60A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026065 all species →	Family	SIN3-HDAC complex-associated factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13422 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016580 all species →	Cellular Component	obsolete Sin3 complex	Interproscan
GO:0030336 all species →	Biological Process	negative regulation of cell migration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26090	SINHCAF; SIN3-HDAC complex-associated factor	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.