Gene detail

Detailed information of PFX28354.1 in Stylophora pistillata

Genomic Location: Spis.scaffold85:702447...714853
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

cry-dash

ATGGCTACGGCGGTGAATACTTCCTTACCCCGGCCGCCATTCGGCACATTTCGTCTCCATCTCTCCGAAGACCCTATCGCCTTGGAACAGCGATTTAGACGGCAACAGGCATCCGGAAAGTTTCCAGCAACGTTCCACACTTACGATATAGCTTCATTTCAAGAGAAAGATGAAGCATATTTTCGCAGATTTGCCGAGAAGGGCGAGCGTCGCGCCGACGCACCGAGGCGAAGCGATACACCAGTTGTGGATCCAACAAGTGGTTTCACCTCAGTCGGTGCCGACGCGGAAGATGGAAATTATCAACAAATTGATCCTCTTGTGAACAAAGATCATAGACCGCAGTCCGCCATACCATACGGACGACCGATTGTCTCTCCTATTCCGGGCTTGAGGTCGCAGAATGCTCCATGGGAGGCGAAAAGCATGGAATTAGAGCAGCTTCTGCAGCAACCTAGCCAATTTCCTGGATTCAAAGAGGCAAAGGAACTCTCCCAAAAAGTTCCAGCTAGTGAGCTACTGAAAAACAAGGAATGGAGGGATGCAGTGGCAACAAGATCATTCTATACGTCAGAAACTCAAAAGTTGTACAGTGGAGTAGATTGGAGTTCAAGAATTGCTCCATCTGTCCCACCACCTATCACCACAGTTGAGTTGCAGCCAGACATGGTATCCTACAGATTTACCTCAAAAAGATATTCACCCAAATCAGAACTTTGGCAGAAAATTGGCAGCAGACCACACAGTTGGGATTTTGTTCAGTCACGCAATGGACACCATGTACATGGACCCATTGATTTCTGCAGCCCAAGCAAAAAGACAGGACATATACCAGGATACAGTGGCCACAGCCCTGGATTTGGTCACAGAGACCATCCAAGGAAGACTTTTACACCAATTGCTGTGGTGCGGACATCACAACCAAGATTCACAGACACTGCAAGGCGTGGCAATATTCCTGGTTACTCTGGCTGTGTGCTGTTTTCAGCGCATCATCCTACGCACAGTAAAGAACCAGACCCAAAGGCTACCACCACAGCTAGAATTCACAGAACACTCAAAGTTCCAACTAAAGTTCAGTTGTCACCGTTTAGACACAAGGGACCGATGTCCAAAATGCTTCACAGCAATGTTTTGTTATCTCCACAATGCATTGAAAATGGGTACATATCGTGTATTGAGTCAACACTGATGTTTCGACTTGTCATTCAACGTGGCTATTTCACTTTCACAGATTTTCAAGTGAGTTTCTTTTCAGCGAGCAGAAACTTCCGACATTCCTTGGGAAGATATCAACACTGCGAGACAACTGCTACCATGGAAGGGGGTAAAACTGTTGTCATTTACCTCCTGCGAAATGACCTGAGAGTTCATGACAATGAGTGCTTACACTGGGCACATCAGAATAGTGACTTTGTGATTCCTTTATTTTGCTTTGACAAGAGCATACTCAGCCCCGGTGCCATAACATGGCATTACAAATTTGCAAAAACAGCAACACACAGAGCCAAGTTTATACTGGAGAGTGTGTCTGACTTAAGAGAATCATTAAGGAAACTTGGAAGTGACCTAGTTGTACGTAGTGGGCAGACAGCAAAGGAGGCAGTTTCAGACATAATTAACCTATGCCAGGCAAAGAATGAAGGACATGTTTCCCTTGTTTATCAGAGAGAAATCACAAAGGAAGAAACAGATGTAGAAGAAGAATTGTTGAAGCTTTGTGAAGCAGAAAAAGTTACTGTGAAGTCCTTTTGGGGATTGACACTGTACCATTTGGAAGATTTACCATTTGCCTCTGTGAAGTTTTTGCCTGATACATACACAGACTTTCGGAAAAATGTTGAGGCAAAATGCAGAGTGCGGCCCCTTATTCCAACCCCAGACTGTCTAAAATCACTGCCTGCATTTTTGAAAGATGACCAAGTTGGCAGAATGCCAACTTTACAGGAACTTGCAATGGATCATTCAGAAGAAACAGCAGATCAAAGATCAGCTTTCCCATTTTCTGGGGGAGAAACTGCAGCTCTCGCTAGGCTTAATCAGTACCTCTGGGATACAGATCTTGTGGCAAGGTATAAAGAGACTCGCAATGGGCTTATTGGATCAGACTACTCAACAAAATTTAGCCCATGGCTGGCTGTAGGAGCTCTCTCACCAGGGAAGGTCTTTGATTGTATTAAAAAGTATGAAACTGAGTGTACAGCAAATCAATCCACGTACTGGGTCATTTTTGAGCTGCTGTGGCGAGATTACTTCAAGTTTGTCAGCCTTAAATATGGCGTCTCCATCTTTTACCTGTCTGGAATTATGAGGAAAACAGGGTTGCCATGGAAGTGTGACATGGTGGCATTTGACAAGTGGCGATACGGGCAGACTGGAGTTCCATTTGTGGATGCAAACATGAGAGAGCTACTCTACACGGGATGGATGTCCAATCGTGGACGTCAAAACGTGGCAAGCTTCTTGGTGAAAGATCTTGGGCTTGATTGGCGCATGGGAGCTGAGTGGTTTGAATCTCTTCTTCTAGATCACGATGTATCCAGTAACTATGGCAATTGGAATTATTCAGCAGGCATCGGCAATGATCCCCGTGAAAATCGAAAGTTCAACATGGTCAAACAAGCTCTTGATTATGACCCAGATGGAGATTTTGTAAGGCTGTGGGTTCCAGAGCTGGCTGGTTTGAAAGGTGCTAAAGTTCATACCCCTTGGCTGCTGTCATCATCAGAACTGAAACATGCAGGCATAACTCTGGGGGGAAACTATCCCAAACCAATGGTCTGCCCACCAGAATGGAGCCGGCACACATCAAAAGTCAAGGACTCAAGAAAAACGCTAAGAGCACAGCCAAGAGGAATTGATTTCTACTTCAAGTCGCCAAAGGGAGCTGGCTCATCCAGGAAGAGACATTAA

Transcript

rna-Spis6955_mrna

ATGGCTACGGCGGTGAATACTTCCTTACCCCGGCCGCCATTCGGCACATTTCGTCTCCATCTCTCCGAAGACCCTATCGCCTTGGAACAGCGATTTAGACGGCAACAGGCATCCGGAAAGTTTCCAGCAACGTTCCACACTTACGATATAGCTTCATTTCAAGAGAAAGATGAAGCATATTTTCGCAGATTTGCCGAGAAGGGCGAGCGTCGCGCCGACGCACCGAGGCGAAGCGATACACCAGTTGTGGATCCAACAAGTGGTTTCACCTCAGTCGGTGCCGACGCGGAAGATGGAAATTATCAACAAATTGATCCTCTTGTGAACAAAGATCATAGACCGCAGTCCGCCATACCATACGGACGACCGATTGTCTCTCCTATTCCGGGCTTGAGGTCGCAGAATGCTCCATGGGAGGCGAAAAGCATGGAATTAGAGCAGCTTCTGCAGCAACCTAGCCAATTTCCTGGATTCAAAGAGGCAAAGGAACTCTCCCAAAAAGTTCCAGCTAGTGAGCTACTGAAAAACAAGGAATGGAGGGATGCAGTGGCAACAAGATCATTCTATACGTCAGAAACTCAAAAGTTGTACAGTGGAGTAGATTGGAGTTCAAGAATTGCTCCATCTGTCCCACCACCTATCACCACAGTTGAGTTGCAGCCAGACATGGTATCCTACAGATTTACCTCAAAAAGATATTCACCCAAATCAGAACTTTGGCAGAAAATTGGCAGCAGACCACACAGTTGGGATTTTGTTCAGTCACGCAATGGACACCATGTACATGGACCCATTGATTTCTGCAGCCCAAGCAAAAAGACAGGACATATACCAGGATACAGTGGCCACAGCCCTGGATTTGGTCACAGAGACCATCCAAGGAAGACTTTTACACCAATTGCTGTGGTGCGGACATCACAACCAAGATTCACAGACACTGCAAGGCGTGGCAATATTCCTGGTTACTCTGGCTGTGTGCTGTTTTCAGCGCATCATCCTACGCACAGTAAAGAACCAGACCCAAAGGCTACCACCACAGCTAGAATTCACAGAACACTCAAAGTTCCAACTAAAGTTCAGTTGTCACCGTTTAGACACAAGGGACCGATGTCCAAAATGCTTCACAGCAATGTTTTGTTATCTCCACAATGCATTGAAAATGGGTACATATCGTGTATTGAGTCAACACTGATGTTTCGACTTGTCATTCAACGTGGCTATTTCACTTTCACAGATTTTCAAGTGAGTTTCTTTTCAGCGAGCAGAAACTTCCGACATTCCTTGGGAAGATATCAACACTGCGAGACAACTGCTACCATGGAAGGGGGTAAAACTGTTGTCATTTACCTCCTGCGAAATGACCTGAGAGTTCATGACAATGAGTGCTTACACTGGGCACATCAGAATAGTGACTTTGTGattcctttattttgctttgacAAGAGCATACTCAGCCCCGGTGCCATAACATGGCATTACAAATTTGCAAAAACAGCAACACACAGAGCCAAGTTTATACTGGAGAGTGTGTCTGACTTAAGAGAATCATTAAGGAAACTTGGAAGTGACCTAGTTGTACGTAGTGGGCAGACAGCAAAGGAGGCAGTTTCAGACATAATTAACCTATGCCAGGCAAAGAATGAAGGACATGTTTCCCTTGTTTATCAGAGAGAAATCACAAAGGAAGAAACAGATGTAGAAGAAGAATTGTTGAAGCTTTGTGAAGCAGAAAAAGTTACTGTGAAGTCCTTTTGGGGATTGACACTGTACCATTTGGAAGATTTACCATTTGCCTCTGTGAAGTTTTTGCCTGATACATACACAGACTTTCGGAAAAATGTTGAGGCAAAATGCAGAGTGCGGCCCCTTATTCCAACCCCAGACTGTCTAAAATCACTGCCTGCATTTTTGAAAGATGACCAAGTTGGCAGAATGCCAACTTTACAGGAACTTGCAATGGATCATTCAGAAGAAACAGCAGATCAAAGATCAGCTTTCCCATTTTCTGGGGGAGAAACTGCAGCTCTCGCTAGGCTTAATCAGTACCTCTGGGATACAGATCTTGTGGCAAGGTATAAAGAGACTCGCAATGGGCTTATTGGATCAGACTACTCAACAAAATTTAGCCCATGGCTGGCTGTAGGAGCTCTCTCACCAGGGAAGGTCTTTGATTGTATTAAAAAGTATGAAACTGAGTGTACAGCAAATCAATCCACGTACTGGGTCATTTTTGAGCTGCTGTGGCGAGATTACTTCAAGTTTGTCAGCCTTAAATATGGCGTCTCCATCTTTTACCTGTCTGGAATTATGAGGAAAACAGGGTTGCCATGGAAGTGTGACATGGTGGCATTTGACAAGTGGCGATACGGGCAGACTGGAGTTCCATTTGTGGATGCAAACATGAGAGAGCTACTCTACACGGGATGGATGTCCAATCGTGGACGTCAAAACGTGGCAAGCTTCTTGGTGAAAGATCTTGGGCTTGATTGGCGCATGGGAGCTGAGTGGTTTGAATCTCTTCTTCTAGATCACGATGTATCCAGTAACTATGGCAATTGGAATTATTCAGCAGGCATCGGCAATGATCCCCGTGAAAATCGAAAGTTCAACATGGTcaaacaagctcttgattatgACCCAGATGGAGATTTTGTAAGGCTGTGGGTTCCAGAGCTGGCTGGTTTGAAAGGTGCTAAAGTTCATACCCCTTGGCTGCTGTCATCATCAGAACTGAAACATGCAGGCATAACTCTGGGGGGAAACTATCCCAAACCAATGGTCTGCCCACCAGAATGGAGCCGGCACACATCAAAAGTCAAGGACTCAAGAAAAACGCTAAGAGCACAGCCAAGAGGAATTGATTTCTACTTCAAGTCGCCAAAGGGAGCTGGCTCATCCAGGAAGAGACATTAAAGAAACTCTGTTTAAGATAGATCTGTTTTTTGATAGACACAAGACTGAATGTTAAGTCCCCTTTATTGTTATGATAAGGATCAGTAGATCAATTGTCTCCTCTACAAGAAGAGATTCTAAGTATCATGAGAAACATCTATTGTGTTTGTGACAAAAGAAAGTTGTTAAATGTATTAAACTGTAACAGTTATACATTTATATTTGCTGATGTTGTTAGCGATAAAGCAATCTCATCCCCAGATTGCCACAGTTGTATGATTGGATTTGCTCAGGTTTAGAGATCCACAGGCGTGGCAATGGATTTGGCTGTATTTTGTGGCAATGGATTGGCTGTAAAGTAAACAACTGACAATAACTAAATAGCTACATCAACCAGAAATGACTTTCTGTATAAGTTGAGGTCGATAGATCAACTGTTTCCTCAACAAAGAAGAGTTTCTAAGTATCATGAAACATTTATTATCTACTTGACAAAGGAAAGCTGTTATGTATTGAACTGCTATGCATTTATATTTGTTGATGTTGTTAGCAATGAAGCAATCTCAAAAGAAAGTTATGTATTGAACTGTTATAcagttatatttaacaattattcgccg

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009495 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03441 all species →	FAD_binding_7	FAD binding domain of DNA photolyase	Domain	Interproscan
PF00875 all species →	DNA_photolyase	DNA photolyase	Domain	Interproscan
PF15073 all species →	SPATA48	Spermatogenesis-associated protein 48	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005101 all species →	Domain	Cryptochrome/DNA photolyase, FAD-binding domain	Interproscan
IPR006050 all species →	Domain	DNA photolyase, N-terminal	Interproscan
IPR027867 all species →	Family	Spermatogenesis-associated protein 48	Interproscan
IPR014133 all species →	Family	Cryptochrome DASH	Interproscan
IPR002081 all species →	Family	Cryptochrome/DNA photolyase class 1	Interproscan
IPR036155 all species →	Homologous_superfamily	Cryptochrome/photolyase, N-terminal domain superfamily	Interproscan
IPR036134 all species →	Homologous_superfamily	Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11455 all species →	CRYPTOCHROME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003913 all species →	Molecular Function	DNA photolyase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0000719 all species →	Biological Process	photoreactive repair	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0003904 all species →	Molecular Function	deoxyribodipyrimidine photo-lyase activity	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25656	cry, CRYD; cryptochrome	-	Others	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.