Gene detail

Detailed information of PFX28416.1 in Stylophora pistillata

Genomic Location: Spis.scaffold83:551800...574600
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

sf3b1

ATGGCCACTTTAGCTAAAGCCCCTACGACTCATGAAGAAATCGAGTGGCAAATTCAGCAGCTGCAAGCTCAACGATCGAATTTGCCCAAAGTTGACATAGGTGAAAAGGTTGGTTTAGCTTCTGTTGGTGAAGGAGGATATGATGTCGACATTTATGGTGCAGGCGGTGACAGGTTTGAAGGCTATTCAGTCGATATTGCCCCAAATGAACAAGAAGAGGATGATGATGATTACTCTACCACTATTATGCATCCTTCAAGGAACACTTATACAGCCCCCACAGCACTTTTGAATGATATAGCCCAGTCTTCTGAGAATGTGGATCCATTTGCACAGCACAGACAGCAAACCATCGCTGAGCGTGAAGATGAATACAGAGCAAGGAGAAGGCAGATGGTGATATCACCACCAAGGCATGATCCTTTTGCAAATGGTGGCAAAACACCCGATCCATCCCATATGAAAAATGTGAGGACCTACCAGGACATTATTCAAGAAACAAATCTTCAGAAAGAACAGGCGGAAATCTTTCGTCATCTCAAGGACCAAGCAGCTTCAGGGGAACTGCAAAGAGCTCAACCAGCTGCGGCATCAAAACCAGAGAAGAAGCGTCGTAGATGGGATCAGCAGGCTTCTGGTGATGAAACTCCAGCCAAGAAAAAGTCCAGCAGTTGGGATCAGGCAGAGATGGCAACTCCTTCTGCCAGTCGCTGGGATGAAACTCCTGGACGTGTAAAAGGCTCAGAAACACCAGGTGTTACCCCCCACAGACCTGGTTCTGAAACACCAGGAGCCACCCCTAGTACAAGGATATGGGAAGCTACACCCAGCCATGTGACCCCTGGACATGCTACACCTGGACATGCCACTCCTGGCGGCAATACCACACCAGGTATTTCATCGACAAGGAGAAATCGCTGGGATGAAACTCCCAAGACAGAAAGAGGTGAGACCCCAGGTCATGCCACTCCAGGCTGGGCAGAAACTCCCAGAACAGATCGCACTGGTGCCGAGACACCGGGGGCCACACCTACTCCAGGAAGTAAGCGGCGCTCTCGATGGGATGAGACACCTGCCAGTCAAATGGGTGGCACTACTCCCATGATTGGTACCAGTGGGGTGACACCAGCTGGACCTGCAGCCATGCAGATGCAGACACCTACCCCAGGACAAATGGCCATGACACCTGAACAGATGCAGGCATATCGCTGGGAGAGGGAAATTGATGAAAGGAACAGGTACCTTTCTGATGATGAACTGGATTCATTTTTCCCCAAAGAGGGATACAAGATTCTTGAGCCACCTCCAGGGTATCAGCCTATCAGAACTCCAAGCCGCAAACTGACTGCCACTCCCACACCTATAGGGGGGAGTGGCTTCTTCATCCAGCAAGAAGACAGATCAGCCAAACTTGTTGAAGATCAACCTCCTGGTAACCTGCCCTACTTGAAGCCAGATGATGTACAGTACTTTGATAAGCTGCTGGTGGATGTTGATGAGAGCACTCTAAGCCCAGAGGAGTTGAAGGAAAGAAAGATTATGAAACTCTTACTGAAGATTAAAAATGGCACTCCACCCATGAGGAAGGCTGCCTTGCGTCAAATAACAGACAAAGCTCGTGAGTTTGGAGCTGGCCCCCTGTTCAACCAGATCTTACCTCTCCTTATGTCCCCTACCCTTGAAGATCAGGAGCGTCATTTGTTGGTGAAAGTCATTGACAGAATCCTGTACAAACTTGATGACCTTGTGCGTCCATTTGTCCACAAGATTCTTGTGGTTATTGAGCCATTGTTGATTGATGAAGATTACTATGCAAGAGTGGAGGGACGTGAAATTATTTCCAACTTGGCTAAGGCTGCTGGTTTGGCAACGATGATCTCTACCATGAGACCTGATATTGATAACATTGATGAATATGTCCGTAACACAACAGCAAGAGCCTTTGCTGTTGTAGCTTCAGCTCTTGGCATTCCTTCTTTGTTACCATTCTTAAAGGCCGTATGCCGCAGCAAGAAATCATGGCAGGCACGACACACTGGAATCAAAATTGTCCAGCAGATAGCTATTTTGATGGGATGTGCTATCTTACCTCATTTGAGAAACTTAGTGGAGATTATTGAACACGGTCTGGTTGATGAACAGCAGAAGGTGCGAACTATCACTGCTCTTGCCTTGGCTGCCCTGGCTGAAGCTGCTACACCCTATGGTATTGAGTCATTTGATAGTGTCCTGAAGCCCTTGTGGAAGGGTATAAGACAGCACAGAGGAAAGGGGCTGGCTGCATTTCTGAAAGCCATTGGATATCTTATTCCCCTCATGGATGCCGAGTATGCCAACTACTATACCAGAGAAGTTATGCTGATCTTGATTCGTGAGTTTCAGAGTCCTGACGAAGAAATGAAAAAGATTGTCTTGAAGGTAGTGAAGCAGTGTTGTGCCACGGATGGTGTAGAACCACAGTACATCAAAGATGAAATCTTGCCAGATTTCTTCAAACATTTCTGGCAGCATAGGATGGCATTGGATAGGAGGAATTACAGACAGCTTGTGGATACAACCGTGGAGCTGGCCAACAAAGTTGGTGCATCTGAGATCATCAACAGAATAGTAGACGATCTCAAAGATGAAAATGAACAATACCGAAAAATGGTCATGGAAACAATTGAAAAGACCATGGGTAACCTGGGCTCATCTGATGTTGATTCCCGCCTTGAGGAGCAGCTTATCGACGGAATCCTGTACGCCTTCCAGGAACAGACTCAGGAGGACATTGTTATGTTGAATGGTTTCGGCACAGTGGTGAATGCTCTTGGTAAGCGTGTCAAGCCATACTTGCCCCAGATCTGTGGTACAATTTTGTGGAGATTAAACAATAAATCGGCCAAGGTCAGACAACAGGCTGCTGATCTTATATCAAGGATTGCCCAAGTCATGATGACCTGTGGAGAGGAAAAGCTGATGGGTCACTTGGGAGTAGTGTTGTACGAGTACCTTGGAGAAGAGTACCCCGAAGTACTGGGCAGTATCTTGGGGGCCCTCAAGGCAATTGTTAATGTTATTGGAATGAACAAAATGACTCCACCCATCAAAGATCTTTTGCCGAGACTCACACCCATTCTCAAGAACAGGCACGAGAAGGTACAGGAGAACTGTATCGACTTAGTTGGTAGGATTGCAGACAGAGGAGCGGAACATGTCGGGGCGCGTGAGTGGATGAGAATTTGTTTTGAGCTTCTTGAACTGCTGAAGGCCCACAAGAAAGCTATTAGAAGAGCTACTGTCAACACGTTTGGTTACATCGCCAAGGCAATCGGTCCTCAAGATGTACTCGCTACTCTGCTCAACAACTTGAAAGTTCAGGAACGACAGAATCGAGTGTGCACCACTGTAGCTATCGCCATTGTTGCCGAGACGTGCTCGCCATTCACAGTCCTGCCAGCCCTCATGAACGAATACCGTGTCCCAGAGCTTAACGTACAAAATGGCGTACTGAAGTCACTGTCGTTCTTGTTTGAATACATTGGAGAAATGGGAAAAGATTACATCTATGCTGTGACGCCTCTACTGGAGGATGCTCTCATGGACAGAGATCTGGTCCATCGCCAAACAGCGTGTGCTGCCATAAAGCACATGGCCCTGGGAGTATCCGGCTTTGGCTGTGAAGACGCCCTCACTCACCTTATCAATTACGTATGGCCCAACATCTTTGAGACGTCGCCCCATGTCGTAAACGCTGTAATGGAGTCCATTGAAGGCATGAGAGTGGCTTTAGGACCATCTAAAGTACTTCAATATTGTTTACAGGGAATGTTTCATCCGGCGCGAAAAGTTCGAGATGTCTACTGGAAGATTTACAACAGCTTGTACATTGGGTCTCAGGATGCTCTAGTAGCAGCATATCCCACAGCACCCAGTGATGAAAAGAACCATTTCTCAAGATCAGAATTATCTTATTTCCTCTGA

Transcript

rna-Spis6849_mrna

AAGATGGCCACTTTAGCTAAAGCCCCTACGACTCATGAAGaaatcGAGTGGCAAATTCAGCAGCTGCAAGCTCAACGATCGAATTTGCCCAAAGTTGACATAGGTGAAAAGGTTGGTTTAGCTTCTGTTGGTGAAGGAGGATATGATGTCGACATTTATGGTGCAGGCGGTGACAGGTTTGAAGGCTATTCAGTCGATATTGCCCCAAATGAACAAGAAGAGGATGATGATGATTACTCTACCACTATTATGCATCCTTCAAGGAACACTTATACAGCCCCCACAGCACTTTTGAATGATATAGCCCAGTCTTCTGAGAATGTGGATCCATTTGCACAGCACAGACAGCAAACCATCGCTGAGCGTGAAGATGAATACAGAGCAAGGAGAAGGCAGATGGTGATATCACCACCAAGGCATGATCCTTTTGCAAATGGTGGCAAAACACCCGATCCATCCCATATGAAAAATGTGAGGACCTACCAGGACATTATTCAAGAAACAAATCTTCAGAAAGAACAGGCGGAAATCTTTCGTCATCTCAAGGACCAAGCAGCTTCAGGGGAACTGCAAAGAGCTCAACCAGCTGCGGCATCAAAACCAGAGAAGAAGCGTCGTAGATGGGATCAGCAGGCTTCTGGTGATGAAACTCCAGCCAAGAAAAAGTCCAGCAGTTGGGATCAGGCAGAGATGGCAACTCCTTCTGCCAGTCGCTGGGATGAAACTCCTGGACGTGTAAAAGGCTCAGAAACACCAGGTGTTACCCCCCACAGACCTGGTTCTGAAACACCAGGAGCCACCCCTAGTACAAGGATATGGGAAGCTACACCCAGCCATGTGACCCCTGGACATGCTACACCTGGACATGCCACTCCTGGCGGCAATACCACACCAGGTATTTCATCGACAAGGAGAAATCGCTGGGATGAAACTCCCAAGACAGAAAGAGGTGAGACCCCAGGTCATGCCACTCCAGGCTGGGCAGAAACTCCCAGAACAGATCGCACTGGTGCCGAGACACCGGGGGCCACACCTACTCCAGGAAGTAAGCGGCGCTCTCGATGGGATGAGACACCTGCCAGTCAAATGGGTGGCACTACTCCCATGATTGGTACCAGTGGGGTGACACCAGCTGGACCTGCAGCCATGCAGATGCAGACACCTACCCCAGGACAAATGGCCATGACACCTGAACAGATGCAGGCATATCGCTGGGAGAGGGAAATTGATGAAAGGAACAGGTACCTTTCTGATGATGAACTGGATTCATTTTTCCCCAAAGAGGGATACAAGATTCTTGAGCCACCTCCAGGGTATCAGCCTATCAGAACTCCAAGCCGCAAACTGACTGCCACTCCCACACCTATAGGGGGGAGTGGCTTCTTCATCCAGCAAGAAGACAGATCAGCCAAACTTGTTGAAGATCAACCTCCTGGTAACCTGCCCTACTTGAAGCCAGATGATGTACAGTACTTTGATAAGCtgctgGTGGATGTTGATGAGAGCACTCTAAGCCCAGAGGAgttgaaggaaagaaagattATGAAACTCTTACTGAAGATTAAAAATGGCACTCCACCCATGAGGAAGGCTGCCTTGCGTCAAATAACAGACAAAGCTCGTGAGTTTGGAGCTGGCCCCCTGTTCAACCAGATCTTACCTCTCCTTATGTCCCCTACCCTTGAAGATCAGGAGCGTCATTTGTTGGTGAAAGTCATTGACAGAATCCTGTACAAACTTGATGACCTTGTGCGTCCATTTGTCCACAAGATTCTTGTGGTTATTGAGCCATTGTTGATTGATGAAGATTACTATGCAAGAGTGGAGGGacgtgaaattatttccaacTTGGCTAAGGCTGCTGGTTTGGCAACGATGATCTCTACCATGAGACCTGATATTGATAACATTGATGAATATGTCCGTAACACAACAGCAAGAGCCTTTGCTGTTGTAGCTTCAGCTCTTGGCATTCCTTCTTTGTTACCATTCTTAAAGGCCGTATGCCGCAGCAAGAAATCATGGCAGGCACGACACACTGGAATCAAAATTGTCCAGCAGATAGCTATTTTGATGGGATGTGCTATCTTACCTCATTTGAGAAACTTAGTGGAGATTATTGAACACGGTCTGGTTGATGAACAGCAGAAGGTGCGAACTATCACTGCTCTTGCCTTGGCTGCCCTGGCTGAAGCTGCTACACCCTATGGTATTGAGTCATTTGATAGTGTCCTGAAGCCCTTGTGGAAGGGTATAAGACAGCACAGAGGAAAgGGGCTGGCTGCATTTCTGAAAGCCATTGGATATCTTATTCCCCTCATGGATGCCGAGTATGCCAACTACTATACCAGAGAAGTTATGCTGATCTTGATTCGTGAGTTTCAGAGTCCTGacgaagaaatgaaaaagattgTCTTGAAGGTAGTGAAGCAGTGTTGTGCCACGGATGGTGTAGAACCACAGTACATCAAAGATGAAATCTTGCCAgatttcttcaaacatttctgGCAGCATAGGATGGCATTGGATAGGAGGAATTACAGACAGCTTGTGGATACAACCGTGGAGCTGGCCAACAAAGTTGGTGCATCTGAGATCATCAACAGAATAGTAGACGATctcaaagatgaaaatgaacaatacCGAAAAATGGTCATGGAAACAATTGAAAAGACCATGGGTAACCTGGGCTCATCTGATGTTGATTCCCGCCTTGAGGAGCAGCTTATCGACGGAATCCTGTACGCCTTCCAGGAACAGACTCAGGAGGACATTGTTATGTTGAATGGTTTCGGCACAGTGGTGAATGCTCTTGGTAAGCGTGTCAAGCCATACTTGCCCCAGATCTGTGGTACAATTTTGTGGAGATTAAACAATAAATCGGCCAAGGTCAGACAACAGGCTGCTGATCTTATATCAAGGATTGCCCAAGTCATGATGACCTGTGGAGAGGAAAAGCTGATGGGTCACTTGGGAGTAGTGTTGTACGAGTACCTTGGAGAAGAGTACCCCGAAGTACTGGGCAGTATCTTGGGGGCCCTCAAGGCAATTGTTAATGTTATTGGAATGAACAAAATGACTCCACCCATCAAAGATCTTTTGCCGAGACTCACACCCATTCTCAAGAACAGGCACGAGAAGGTACAGGAGAACTGTATCGACTTAGTTGGTAGGATTGCAGACAGAGGAGCGGAACATGTCGGGGCGCGTGAGtggatgagaatttgttttgagCTTCTTGAACTGCTGAAGGCCCACAAGAAAGCTATTAGAAGAGCTACTGTCAACACGTTTGGTTACATCGCCAAGGCAATCGGTCCTCAAGATGTACTCGCTACTCTGCTCAACAACTTGAAAGTTCAGGAACGACAGAATCGAGTGTGCACCACTGTAGCTATCGCCATTGTTGCCGAGACGTGCTCGCCATTCACAGTCCTGCCAGCCCTCATGAACGAATACCGTGTCCCAGAGCTTAACGTACAAAATGGCGTACTGAAGTCACTGTCGTTCTTGTTTGAATACATTGGAGAAATGGGAAAAGATTACATCTATGCTGTGACGCCTCTACTGGAGGATGCTCTCATGGACAGAGATCTGGTCCATCGCCAAACAGCGTGTGCTGCCATAAAGCACATGGCCCTGGGAGTATCCGGCTTTGGCTGTGAAGACGCCCTCACTCACCTTATCAATTACGTATGGCCCAACATCTTTGAGACGTCGCCCCATGTCGTAAACGCTGTAATGGAGTCCATTGAAGGCATGAGAGTGGCTTTAGGACCATCTAAAGTACTTCAATATTGTTTACAGGGAATGTTTCATCCGGCGCGAAAAGTTCGAGATGTCTACTGGAAGATTTACAACAGCTTGTACATTGGGTCTCAGGATGCTCTAGTAGCAGCATATCCCACAGCACCCAGTGATGAAAAGAACCATTTCTCAAGATCAGAATTATCTTATTTCCTCTGATCTAAGGAGAATATCCAAGCAATGGCTCTGCGCCGAACATCTTTAGCCATAGCATCGTCATTCGTTcagtaatttaatattttagccTTTCTAGAAAGCGTGCAAGTGCCATGCTGTACGTAACAGAActtgaagattttcttttttgattagtttttttgttgttgttgttgtcattggGGCCTGAACCTAGAATGACGCACATCAAATCAGTCTATTTAActaagaaatttcaaacttcaacttactaAAAAGACGCAAAAAAGCTGAAGATGGTATTTCGTTAGTGTAGAACCATTGAGTAAACGTTATACGAACTCTGAACTCTCTCTTTGCGATGAAGTAGTCGTTATTTTGCGACCTATTGATAAATTTTAGACGCAAAAATTTTAATCGAAAGTGCTGCTGTGCTGGTCGCAATTTCGAGAACTCTATGTAAAGGTGTGAGATGGTAATCAGTCTAAATTGTTATAAACTGAACGCGGCTTTTGACTTATTATTTTCGTGATAAGTTTGCTCAGGATAATTTTCAAGAGAAGTAGATTTGTGATTTATGTAAGCTGAACTGCGATTGAACGCAATGAAGGGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08920 all species →	SF3b1	Splicing factor 3B subunit 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR034085 all species →	Domain	TOG domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR038737 all species →	Family	Splicing factor 3B subunit 1-like	Interproscan
IPR015016 all species →	Domain	Splicing factor 3B subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12097 all species →	SPLICING FACTOR 3B, SUBUNIT 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000245 all species →	Biological Process	spliceosomal complex assembly	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0005689 all species →	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12828	SF3B1, SAP155; splicing factor 3B subunit 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.