Gene detail

Detailed information of PFX28475.1 in Stylophora pistillata

Genomic Location: Spis.scaffold82:418133...431219
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Appbp2

ATGGAGGTTTTGGTATCCGAACTAAGTGAGTTGGATGTCGTTTCAAAGGCTTTAAAAGCTGGAGACACGAGGGTCAAGCTTTATGCAGTATTCCAAGGTTTGAAAGAAGAAGGATTTGACTTATCAAAAGTCCTTTCAGCAGAGTTTATCAGGAGGTGTCAAAAGGCATTAAATGCAGAAGAAATATCAGATCAACATCTCATTCAAAAACTGTTAAAAACAGGGATGTCACTTGGTGGTTTCCTATCAGAGGCTGGATGGTATGACGATGCAGAGAAGGTATTGGCTGTTAGTCACAAGCTGTGTAACACCAGAGAACCAAATGAATGTAGAATAGCTTGCAAATTTCTCACAAGACTGCTCCATCTTAGAACTGCAAATTGTAAATTTGGCTCAGCAAAAGATACCTTTAGAGAAGCCATGGAAATGACAAGTAAGATAGCTGGCAAAAATGAGCTGGACATTAACTTGGCAGTTCTTTATGGAGAAAAATGTGGCCTGCTTTTTTCACTCAGTGATTATGAAGAGGCATACAAATACAGCATGAAGGCCTTACAGAAGATTTGTCCTGGATTGCCTTTAAAGGCTTGTGTAGTGAAGCGAAAATTCAAGAAAGCAGAACTTTTGATAAAGCAGGCCATGTTTTTAGCTAAGCAGCATTTTGGATGTGATCACCCAAAGTATGCTGATACATTAATTGATTATGGATATTATCTCCTCAATGTAGATGCTATAAATCTTTCTGTCAAAGTATACAAAGAAGCTTTTCGTACTAGGTTTTATGTCTTTGGTTGCAACAACTTACATGTAGCAACAGCACATGAGGATCTCAGTTATGCTTTGTATGTCCATGAATATAGCACTGGAAACTTTGATGAAGCTAGAGACCACGCAGAAAGAGCCATCAGTATTATAACAAACCTTTTCCCAAAGGATCATTTACTTCTTGCTTCATCAAAAAGAGTCAAAGCCCTTATTCTAGAAGAAATAGCAATTGACACCCCAGTCAGACAGAAAGAGGAAGAAATTTTAAAAGAAGCTCAGGAGCTTCACTTAGCTTCACTTGATCTCGCAAGGAAAGCATTTGGAGAAAATAATGTCCAAACAGCAAAACATTATGGCAACTTAGGACGCCTTTATCAGTCTATGAGAAGATATGAAGAAGCAGAGGCAATGCACAAGAAAGCAATTGAAATTAAAGAACGAATATTAGGAAGCGAAGACTATGAAGTGGCACTGTCCCTGGGTCACTTGGCGTCATTGTACAATTACGACATGGAGCAATATGAAAGAGCTGAGCAGCTGTACTTAAGGTCAATTGCAATAGGAAGAAAACTGTTTGGAGATGGATACAGTGGTCTTGAGTATGATTACAGAGGACTTATTAATCTCTATGATTCTCAAGCAGAGGAGTTCTTTGTTAGTAAATATATTGGCCCTGCGGTCTTGGAACTGATTGATCCTAACCCATTCGGCGCAGTCCCAAAATCTTCAACTCTTCATGCTCTCATTTCAATGGTGCACACTTGGACGCGAGCCACGGACGGGACCAGTTCTGTGGTGCTTGTTTTGTTCCTAGATTACAGGAAGGCTTTTGATCTTGTGGATCACAATATTCTGGCAGCCAAGATTCTTGGGTTGCGTATTCCGAGCTGGGTTGCTCGTTGGGTCTGTGACTTCCTTCTGGACAGGCGGCAGCGAGTAAAGCTTTCAATTGACTGTTTCTCGGAATGGGAAGCCGTTCCATCTGGAGTGCCTCAAGGCATCAAACTTGGACCCTGGCTCTTCATCCTGATGATCCATGATCTCCACACACCCGGCTTCGAGGCGTGGAAATACGTGGATGATACAACACTGGCTGAGGTGGTACCAAGGGGAGGACAAAGTGCAATGCAAGTCCCTGTTACAGCTGTGGAGCAATGGTCTATCACAAACACGCTTCAGCTGAAACCAGATAAGTGTAAAGAACTGCTGATTGACTTTAAAAGAACGCCACACCAGTTTGATGCGATTACTGTCAACTCTAAGGAACTTGAACGTGTAAACAGTGTTTAA

Transcript

rna-Spis6769_mrna

ATGGAGGTTTTGGTATCCGAACTAAGTGAGTTGGATGTCGTTTCAAAGGCTTTAAAAGCTGGAGACACGAGGGTCAAGCTTTATGCAGTATTCCAAGGTTTGAAAGAAGAAGGATTTGACTTATCAAAAGTCCTTTCAGCAGAGTTTATCAGGAGGTGTCAAAAGGCATTAAATGCAGAAGAAATATCAGATCAACATCTCATtcaaaaactgttaaaaacaGGGATGTCACTTGGTGGTTTCCTATCAGAGGCTGGATGGTATGACGATGCAGAGAAGGTATTGGCTGTTAGTCACAAGCTGTGTAACACCAGAGAACCAAATGAATGTAGAATAGCTTGCAAATTTCTCACAAGACTGCTCCATCTTAGAACTGCAAATTGTAAATTTGGCTCAGCAAAAGATACCTTTAGAGAAGCCATGGAAATGACAAGTAAGATAGCTGGCAAAAATGAGCTGGACATTAACTTGGCAgttctttatggagaaaaatgTGGCCTGCTTTTTTCACTCAGTGATTATGAAGAGGCATACAAATACAGCATGAAGGCCTTACAGAAGATTTGTCCTGGATTGCCTTTAAAGgCTTGTGTAGTGAAGCGAAAATTCAAGAAAGCAGAACTTTTGATAAAGCAGGCCATGTTTTTAGCTAAgcagCATTTTGGATGTGATCACCCAAAGTATGCTGATACATTAATTGATTATGGATATTATCTCCTCAATGTAGATGCTATAAATCTTTCTGTCAAAGTATACAAAgAAGCTTTTCGTACTAGGTTTTATGTCTTTGGTTGCAACAACTTACATGTAGCAACAGCACATGAGGATCTCAGTTATGCTTTGTATGTCCATGAATATAGCACTGGAAACTTTGATGAAGCTAGAGACCACGCAGAAAGAGCCATCAGTATTATAACAAACCTTTTCCCAAAGGATCATTTACTTCTTGCTTCATCAAAAAGAGTCAAAGCCCTTATTCTAGAAGAAATAGCAATTGACACCCCAGTCAGAcagaaagaggaagaaattttaaaagaagctCAGGAGCTTCACTTAGCTTCACTTGATCTCGCAAGGAAAGCATTTGGAGAAAATAATGTCCAAACAGCAAAACATTATGGCAACTTAGGACGCCTTTATCAGTCTATGAGAAGATATGAAgaaGCAGAGGCAATGCACAAGAAAgcaattgaaattaaagaacGAATATTAGGAAGCGAAGACTATGAAGTGGCACTGTCCCTGGGTCACTTGGCGTCATTGTACAATTACGACATGGAGCAATATGAAAGAGCTGAGCAGCTGTACTTAAGGTCAATTGCAATAGGAAGAAAACTGTTTGGAGATGGATACAGTGGTCTTGAGTATGATTACAGAGGACTTATTAATCTCTATGATTCTCAAGCAGAGGAGTTCTTTGTTAGTAAATATATTGGCCCTGCGGTCTTGGAACTGATTGATCCTAACCCATTCGGCGCAGTCCCAAAATCTTCAACTCTTCATGCTCTCATTTCAATGGTGCACACTTGGACGCGAGCCACGGACGGGACCAGTTCTGTGGTGCTTGTTTTGTTCCTAGATTACAGGAAGGCTTTTGATCTTGTGGATCACAATATTCTGGCAGCCAAGATTCTTGGGTTGCGTATTCCGAGCTGGGTTGCTCGTTGGGTCTGTGACTTCCTTCTGGACAGGCGGCAGCGAGTAAAGCTTTCAATTGACTGTTTCTCGGAATGGGAAGCCGTTCCATCTGGAGTGCCTCAAGGCATCAAACTTGGACCCTGGCTCTTCATCCTGATGATCCATGATCTCCACACACCCGGCTTCGAGGCGTGGAAATACGTGGATGATACAACACTGGCTGAGGTGGTACCAAGGGGAGGACAAAGTGCAATGCAAGTCCCTGTTACAGCTGTGGAGCAATGGTCTATCACAAACACGCTTCAGCTGAAACCAGATAAGTGTAAAGAACTGCTGATTGACTTTAAAAGAACGCCACACCAGTTTGATGCGATTACTGTCAACTCTAAGGAACTTGAACGTGTAAACAGTGTTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13374 all species →	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR042476 all species →	Family	Amyloid protein-binding protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46575 all species →	AMYLOID PROTEIN-BINDING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031462 all species →	Cellular Component	Cul2-RING ubiquitin ligase complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:1990756 all species →	Molecular Function	ubiquitin-like ligase-substrate adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX28475.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.