Gene detail

Detailed information of PFX28563.1 in Stylophora pistillata

Genomic Location: Spis.scaffold81:568524...603107
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PGM2

ATGGACAGTGACGGAGACGGTAGCAGGGACGACTACGGAGTGACAGTGAGGGTAAGAGAGACAGTGACAGTGACAGTGACAGTGATAGAGACAGTGATAGACACTGGGGGAAAGATTGTGACTGAGGCACAAACAGTAAGAGTGACAATGATAGTGACAGTGATAGAGACAATGATAGACACTGGGGGAAAGATTGTGACTGAGGCACAAACAGTAAGAGTGACAATGATAGTGACAGTGATAGAGACAATGATAGACACTGGGGGAAAGATTGTGACTGAGGCACAAACAGATATCAGGAGAAAGAAAAAAGAGGAAAGAAGCGCATATCGCTTTCAATACATGTACGGCTCAATTTGTAAAATGGCGGAGTCATCAGCAGAGCTCCGTAAGGAGATCGACAGTAATGACAACGGTGCGTGCCCGGTGAATTCAGGTGATGATAAACTTGATGAGAAAGTCAAAGAATGGTTACTTTTAGACAAGCATCCAGCCAGCATTGCAGAAGTTAGACTACTCATAAAAGAGGTGAAGTTTGATGAACTGAGACAGATAATGATGTCACCCTTGTCTTTTGGCACTGCAGGGTTGCGATCAAAAATGGGAGCAGGTTTTAATAGAATAAATGATTTGACAATCATCCAAGCTACTCAAGGTCTTTGTAGGTATTTGGAAAAGCAATTTCCAGACATCAAAGAAAGGGGAGTCATTGTTGGATTTGATGCACGGCATAACAGTACACGCCTTGCCCAAAGGACAAGCTGTGTGTTTGCCAGTCAAGGAGTCCCAGTTTATCTTTTTTCAAGTATAACACCCACTCCATTTGTCCCATATGGAGTTTTGAAATACAAATGTGTTTGTGGAGTTATGATAACAGCTTCACACAATCCCAAAGATGATAATGGTTACAAGGTTTATTTGGATAATGGTGCTCAGATCAAATCCCCTCATGACAAGGGCATTTCCCAGTGTATTGCTGAAAACAGAATTCCCTGGGAAAACTCATGGGAAATCAGTCAAGCCAATCCACTAATTAAAGACCCTTATGAGGAGATATGTGCATCATACTTCGAAGATATAAAAACGTATTGCCATTACAGTGAAAAAAACAGAAAAACCAAGCTGAAATACACCTTCACGCCTATGCATGGTGTTGGACAGAGGTTTGCTGAGCTGGCATTTGAGGCATTCAACCTACCTCCTTTTGTATCTGTGAGAGAACAGATGAATCCAGATCCAGAATTTCCAACAGTGAGATATCCTAACCCTGAGGAAGGAAAGAGTGCCTTGGACCTTGCAATGAGTACTGCTAATGAGAATGGCTGTTCTGTTATTTTGGCAAATGATCCTGACTCTGATAGAATGGCTCTTGCAGAGAAACAGCCAAATGGTCATTGGAAGGTTTTTACTGGTAATGAGATTGGAAGTATGTTTGGGTGGTGGGCATTCACTTGCCACAAAAGGAAACATCCTGAGCTGTATCCAGGCTCATCTGTATATATGATTGCTAGCACAGTTTCTTCAAAAATGCTTCAAGCTATGGCTAGAGAAGAAGGATTTCTGTTTGAAGAAACTCTGACGGGCTTCAAATGGATGGGCAATCTTGCTTGTGATCTTATGGCCCGAGGAAATACTGTCCTCTTTACGTTTGAAGAAGCAATAGGGTTTATGTATGGTACCACTGTTTTTGACAAAGATGGCATCAGCGCTGCAGTGGTAATGGCAGAAATGGCTTCATACCTCAACCTTCAAGGACTTACTTTAACAGAGCAGCTAAACAATTTGTACGAGAGATATGGTGTCCACGTGACCAACAATTCTTACTACCTTTGTTATTCTCCATCAACAATAAAGACCATTTTTGATCGCATAAGGACTCTCGAGAATGGTTGGTACCCCAGTACTTGCGGTCCCTATAAACTATCTGGTATCAGAGATTTAACTGCTGGATATGATAGTACCAAGCCTGGTGACAAACCGGTTCTTCCAGTTAGCAAGTCAAGTCAGATGATCACATTCTATTTCGAGAATGGATGCGTTGCCACTCTTCGAACAAGTGGTACTGAACCAAAGATTAAATATTACACAGAGCTTGCATGCAAGCCGGGAGATAATGTGGACATTCCAACAGCCAATGAAACTCTTCGAAACATCGTTAATACAATCGTTCAAGAATGGTTACGGCCTGATGTAAACAACCTTATTCCCAAGGAAGACTGA

Transcript

rna-Spis6726_mrna

ATGGACAGTGACGGAGACGGTAGCAGGGACGACTACGGAGTGACAGTGAGGGTAAGAgagacagtgacagtgacagtgacagtgatagAGACAGTGATAGACACTGGGGGAAAGATTGTGACTGAGGCACAAACAGTAAGAGTGACAATGATAGTGACAGTGATAGAGACAATGATAGACACTGGGGGAAAGATTGTGACTGAGGCACAAACAGTAAGAGTGACAATGATAGTGACAGTGATAGAGACAATGATAGACACTGGGGGAAAGATTGTGACTGAGGCACAAACAGATatcaggagaaagaaaaaagaggaaagaagCGCATATCGCTTTCAATACATGTACGGCTCAATTTGTAAAATGGCGGAGTCATCAGCAGAGCTCCGTAAGGAGATCGACAGTAATGACAACGGTGCGTGCCCGGTGAATTCAGGTGATGATAAACTTGATGAGAAAGTCAAAGAATGGTTACTTTTAGACAAGCATCCAGCCAGCATTGCAGAAGTTAGACTACTCATAAAAGAGGTGAAGTTTGATGAACTGAGACAGATAATGATGTCACCCTTGTCTTTTGGCACTGCAGGGTTGCGATCAAAAATGGGAGCAGGTTTTAATAGAATAAATGATTTGACAATCATCCAAGCTACTCAAGGTCTTTGTAGGTATTTGGAAAAGCAATTTCCAGACATCAAAGAAAGGGGAGTCATTGTTGGATTTGATGCACGGCATAACAGTACACGCCTTGCCCAAAGGACAAGCTGTGTGTTTGCCAGTCAAGGAGTCCcagtttatcttttttcaagtATAACACCCACTCCATTTGTCCCATATGGAGTTTTGAAATACAAATGTGTTTGTGGAGTTATGATAACAGCTTCACACAATCCCAAAGATGATAATGGTTACAAGgtttatTTGGATAATGGTGCTCAGaTCAAATCCCCTCATGACAAGGGCATTTCCCAGTGTATTGCTGAAAACAGAATTCCCTGGGAAAACTCATGGGAAATCAGTCAAGCCAATCCACTAATTAAAGACCCTTATGAGGAGATATGTGCATCATACTTCGAAGATATAAAAACGTATTGCCATTACAGtgaaaaaaacagaaaaaccaagCTGAAATACACCTTCACGCCTATGCATGGTGTTGGACAGAGGTTTGCTGAGCTGGCATTTGAGGCATTCAACCTACCTCCTTTTGTATCTGTGAGAGAACAGATGAATCCAGATCCAGAATTTCCAACAGTGAGATATCCTAACCCTGAGGAAGGAAAGAGTGCCTTGGACCTTGCAATGAGTACTGCTAATGAGAATGGCTGTTCTGTTATTTTGGCAAATGATCCTGACTCTGATAGAATGGCTCTTGCAGAGAAACAGCCAAATGGTCATTGGAAGGTTTTTACTGGTAATGAGATTGGAAGTATGTTTGGGTGGTGGGCATTCACTTGCCACAAAAGGAAACATCCTGAGCTGTATCCAGGCTCATCTGTATATATGATTGCTAGCacagtttcttcaaaaatgCTTCAAGCTATGGCTAGAGAAGAAGGATTTCTGTTTGAAGAAACTCTGACGGGCTTCAAATGGATGGGCAATCTTGCTTGTGATCTTATGGCCCGAGGAAATACTGTCCTCTTTACGTTTGAAGAAGCAATAGGGTTTATGTATGGTACCACTGTTTTTGACAAAGATGGCATCAGCGCTGCAGTGGTAATGGCAGAAATGGCTTCATACCTCAACCTTCAAGGACTTACTTTAACAGAGCAGCTAAACAATTTGTACGAGAGATATGGTGTCCACGTGACCAACAATTCTTACTACCTTTGTTATTCTCCATCAACAATAAAGACCATTTTTGATCGCATAAGGACTCTCGAGAATGGTTGGTACCCCAGTACTTGCGGTCCCTATAAACTATCTGGTATCAGAGATTTAACTGCTGGATATGATAGTACCAAGCCTGGTGACAAACCGGTTCTTCCAGTTAGCAAGTCAAGTCAGATGATCACATTCTATTTCGAGAATGGATGCGTTGCCACTCTTCGAACAAGTGGTACTGAACCAAAGATTAAATATTACACAGAGCTTGCATGCAAGCCGGGAGATAATGTGGACATTCCAACAGCCAATGAAACTCTTCGAAACATCGTTAATACAATCGTTCAAGAATGGTTACGGCCTGATGTAAACAACCTTATTCCCAAGGAAGACTGAAAACTACTCCTTACTCTGTTATAACACTGAAAAAGATATGAATCCAATACTATGTTCAGAGN

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02879 all species →	PGM_PMM_II	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II	Domain	Interproscan
PF02880 all species →	PGM_PMM_III	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III	Domain	Interproscan
PF02878 all species →	PGM_PMM_I	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005845 all species →	Domain	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	Interproscan
IPR005846 all species →	Domain	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	Interproscan
IPR016055 all species →	Homologous_superfamily	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	Interproscan
IPR005844 all species →	Domain	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	Interproscan
IPR036900 all species →	Homologous_superfamily	Alpha-D-phosphohexomutase, C-terminal domain superfamily	Interproscan
IPR016066 all species →	Conserved_site	Alpha-D-phosphohexomutase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45745 all species →	PHOSPHOMANNOMUTASE 45A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016868 all species →	Molecular Function	intramolecular phosphotransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006166 all species →	Biological Process	purine ribonucleoside salvage	Interproscan
GO:0008973 all species →	Molecular Function	phosphopentomutase activity	Interproscan
GO:0071704 all species →	Biological Process	obsolete organic substance metabolic process	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX28563.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.