Gene detail

Detailed information of PFX28575.1 in Stylophora pistillata

Genomic Location: Spis.scaffold81:144491...154844
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis6696_mrna

attcaagatggcggaggaCATTGTTAAGCATTCAGTTCACACTCTAGTGTTTCGTTCTCTGAAGAGAAGTCATGATATGTTTCTTCATGATAACGCTCTACCGCTGAAAAGGGATCCAAAAAGTGATGAAGTGAAACGGCTATGCAAAATGCGTGATGAATATTTTGTGGTGAAAGACTTGGTTCCTGCCAAAGAAAACACTGCATCTCATAGAAATCCAGTCATAGGAGAGTACCCATCACAAGAAGTTTCAGATGTGCCTCCATTGATACAAGGATCACATCCATATCCATCAGCACCAGGTGTGGTACTTACTGCAGACACTGCAGTGAACACAAGGTCTCCATCACAAGCTGGAGTTCAGCAACTTATGTCAGGTCTACCACCTTCAGCATCACAACTCCAATCACAAAAAGAGAGTACAGGTGTTTTGGCCATTCAACAAAAGGCTTCAGCATCAGGTGGAAAAGAGAGACTTGGACCCCCATCCAAAGCTTTGGTTTCAGTTGGAGGAAACAAATCATCGACAGCATTAATTCAGCAAAAGAAAGCAGCAACCTTGCCTAAACCACAGTGGCATCCACCATGGAAGCTCATGAGGGTAATCAGTGGTCATACTGGTTGGGTAAGATCAGTTGCAGTAGAGCCTGGTAACCAGTGGTTTGCTACAGGATCTGCTGACAGGACAATCAAGaTATGGGAGCTTGGAAGTGGCAAACTGAAGTTATCCTTAACTGGTCATATAAGTACTGTACGGGGTTTAGCTGTGAGTCCAAGACAGCCATATCTGTTCTCATGTGGGGAGGACAAGCAAGTCAAATGCTGGGACCTGGAGTACAACAAGGTTGTGCGGCACTACCATGGTCACCTGAGTGCTATTCACTCACTGGACCTTCATCCTACAATTGATGTGTTGTTCACTTGTGGTAGAGATGCAACAACCAGGGTTTGGGATATGAGAACCAAAGCCTGTATACACACTCTGACAGGTCATACAAGCACAGTGGCAGTTGTTAAAGCTCAGGCTGCAGAGCCTCAGgTTATCACAGGAAGCCATGACTGTACTATCCGTCTGTGGGACTTGGCAGCTGGCAAGTCTAAAGTCACCCTCACTAATCACAAGAAAAGTGTTCGATCTGTAGTGTTACATCCAACACAGTTTTCATTTGCATCAGCATCTCCTGACAACATCAAACAGTGGAAGTTCCCAGATGGGAATTTCCTTCAGAATCTGATTGGACACAACTCAATAGTGAATTGCATGGCAGTAAACCCAGATGGTGTCTTGGTCTCAGGAGGTGATAATGGAACAATGCACTTCTGGGATTGGCGTACTGGTTATAATTTCCAGCGATTACAGGCAGCTGTACAACCTGGCTCCCTTGATAGTGAGGCTGGTATCTTTGCAATGACCTTTGACTTGAGTAGCAGTCGACTCATCACATGTGAAGCTGATAAAACAGTCAAAATTTATAAAGAAGATGACACAGCAaGTGAAGAAACTCATCCTGTGAGCTGGAAACCTGAGATCTTGAAGAGGAAACGATACTAGACAAACTTTCTCAGGCACTTCACTCCCACTACTTTAGTATATTAAGAGTTCCCAACTATCTTTGAGAAAAAAGATGTCAAGGTTTGAATTACAATCTGATCATGATTGCCTTTCAATTacacaaatttcaatttcaagacACAAGCATTTCTCTCACATTTCCTTTTCCAACGATCATTTTGCAATTTACAGGCTTGGTCCACAGCAATAGTCAGTTTGACCAAGATCTGGTTTAAGTTAATATTAAAAGTTTCGGCAAGGCCTGTAAAGCACAATCACTTCAAATGTTGTGGAACCATACACTTAAGATATTTTTGTGTGCATCAATCTTTCCCATCTAAGGCATCAAATTAAATTGTTGGCATTCATATTACCACATAAGCCAGGAGTTGACTCTCCAAACCTTGTTACCTAAAGTGACATCTTGAACTCCAAGAGTATGATGAAGAAATTCAACTGATACACTGTAACCAAGTGAGCAGTCTTTACCTTTGCCCCTTGCCCTGAGATTCACAGTGCCATTAACATAAAAACAAGGGGGTACCTTTTGCCATTGCAAGACAACTTAATCACTTAAGTTCTCTctcattttatcaaataagaATTGAGTAGTTCCTACATTTTC

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR045241 all species →	Family	WD repeat Prp46/PLRG1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19923 all species →	WD40 REPEAT PROTEINPRL1/PRL2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12862	PLRG1, PRL1, PRP46; pleiotropic regulator 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.