Gene detail

Detailed information of PFX28621.1 in Stylophora pistillata

Genomic Location: Spis.scaffold80:406282...421044
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TTC5

ATGGAGGGAGGGCCATCCACTGAAGAGAAGCCAAGCACAGATGAATGGCCGCTGGAGAGGGCGGAGGCTGCAGTTCAACAGCTCTATGAGTTCAGAGACCACTACTTTGAACACAATTCTATCGAGAAGGCTCCTCTAAAGAAGAAAGAAACTGAACTAAAGTTAAAAGAGACTCTGAACATTCTGGACTATGTACAGGCTCAATGTGAAGAAACAGCTAAATGTCTATTTTTGCGAGGGAAAGCCTTGAATGTGATGCCTGATTATGATCCTTTGGCTCAAGATTCTCTATCAAAAGCAGTCAAGCTGGATCCTAACCTAGTTGAAGCTTGGAATTGTCTGGGAGAGTGTTACTGGAAGAGTGGACAAGTCGAGGCAGCCAGAAACTGTTTTGTCGGAGCATTAAATCATGGAAAGAGCAAGGAGTCTTTGAGGAACTTGTCAATGGTGTTACGACAGATTGGGAAAGATCAAGGTGAAAAAGTAGAAAATATCAAAATGAGTGTAGAAAAAGCAAAAGAAGCAGTGCAGTGTGATGTTAAAGATGGAATTTCATGGTACGTACTTGGCAATGCCTATCTCTCCCTCTTCTTTTGTGGATCACAATCTCCTCAGCTGATCAAGCAGTGTATGACTGCATATTCACAAGCGTATAAAGATCCTGTGGCTCAGAACAACCCAGATCTACACTTTAATAGAGCAATGGCATACAAGTACCAGGAGGAATATAAATTAGCCATAGATGGCTTCAAGAGGGCTGGCATTTTAGACCCAGGTTGGATCGAACCTTGTGATGAGAAACTTAAGCTGATGAACATCTTAACAAAAACAATCGACCTTGTAGAGGGAAAGGGTAAATTGAAAGGCAAGAGGCTCCATTCCATGGTTCAGTCCTTGGGTCCATCAGATTTGGGCCCATATGGAGGTGGCAGTTACACCAGTCCATCAGGCCAAACAGTCCAGCTTAATCATATTCCAGTCTCCAAACTGGTTTCTGGCTCAAATTATAATACAGTGATTGTGGGAAAAGTTGTCGGCTCTGTTCCAATGGATGATCCAGTACCATATATCTTTGCCATGGTGGACTGTGAAGATTGTTGTTTACCAGTTACTGTTTACAACATGGCAGCAGGAGCTGGGTTTGCAGTTGGTGACTCTGTTGCTATCCCTGAACCTTTCTGTCAGGAAACTGATTTCTCTGAAACTAGCACAATGGAATGTGTGTTTTCACTGGTTATGCGGGGAAAACATCAGATTTCTCCTCACACATCATTACTTGATGAATACCTCAATCTTTCTTTTAAAGAAATTCACAGTGATTCAGAAGGTTTTGCGAAAATGTCTTTAGACATTGCGTCAAGTGTAGCTTTTCATCCCAACAGACAAGCGAATGGGGAACTTGCTGTGTCAATGTTAAAAAAGTGGCTGTCATCATATGGTCACCCATCAACAACCGGAGGACCAATTATAGCTTCTACAATCACAATTGAAGCCATTCAAGATCTGTTGCATTCAAGCGGCTTCCCTATTGAAGCGCCCCAACATGTAGACTTGTGTCCTGGACCATTTGAAGACACGCAATTTGATGCAGTTGTGGATGTTGAGACCTCTGATGATTGTATGAATGATGGAGCTGTTGCAGATCTGAAATTTACAGACCTTGACGCTTGTTCAGAATATGGATATGGTGGATCTGACCTATCAGATGATGAAATCAACTTTTTCCAAGATCTGCCGCTGAGTCCTGACTCACCATTGCTCTGTGATTCAGCTGATATTGACTTTGGATTTGATTCGGGAATTGAGGCTGAGATGGATGAACCTCATGATGGAGCAGAAGACAAGGATGGGAAAAAAGAGGAAGGAAAGACTTGTGAAGACAAGAAATCCACTGATGAATCAAAGCCAAACGACAGTCAGAATGAGCAGTCAAGTGCAATAAAGCCAGTAAACAAGGACACAAAAGCAAAGGACAAGATGAAGAGAGTAACAGAGGAGAAAGATGTTGAGGATGTTAAGGAAGAAGGCGATGATAAAGATGATGAAAACGAAGATGATCTTCCGCACATTCACTGCCAATACCTGTGGGAGTTCCTTCATCAGATTTTGCTGGAAAAACAGAATAAGTATATTGCATGGAAAAATCAAACCAAAGGAGTGTTTCGTCTTCTTGACCACAATGGCTTGGCCCGCCTCTGGGGAAAACAGAAGAACAGAAAAAATATGACATACGAGAAACTTAGTCGTGCTCTCAGATACTACTACAGCAAAAACATCCTCAAAAAGGTGCCTGGTCAGAGACTGACTTACAAGTTTGTTCGAAATCTCAATGGAAAGAAGTATCCTAACTGA

Transcript

rna-Spis6660_mrna

ATGGAGGGAGGGCCATCCACTGAAGAGAAGCCAAGCACAGATGAATGGCCGCTGGAGAGGGCGGAGGCTGCAGTTCAACAGCTCTATGAGTTCAGAGACCACTACTTTGAACACAATTCTATCGAGAAGGCTCCtctaaagaagaaagaaactgaaCTAAAGTTAAAAGAGACTCTGAACATTCTGGACTATGTACAGGCTCAATGTGAAGAAACAGCTAAATGTCTATTTTTGCGAGGGAAAGCCTTGAATGTGATGCCTGATTATGATCCTTTGGCTCAAGATTCTCTATCAAAAGCAGTCAAGCTGGATCCTAACCTAGTTGAAGCTTGGAATTGTCTGGGAGAGTGTTACTGGAAGAGTGGACAAGTCGAGGCAGCCAGAAACTGTTTTGTCGGAGCATTAAATCATGGAAAGAGCAAGGAGTCTTTGAGGAACTTGTCAATGGTGTTACGACAGATTGGGAaagatCAAGgtgaaaaagtagaaaatatcaaaatgagtgtagaaaaagcaaaagaagcaGTGCAGTGTGATGTTAAAGATGGAATTTCATGGTaCGTACTTGGCAATGCCTATCTCTCCCTCTTCTTTTGTGGATCACAATCTCCTCAGCTGATCAAGCAGTGTATGACTGCATATTCACAAGCGTATAAAGATCCTGTGGCTCAGAACAACCCAGATCTACACTTTAATAGAGCAATGGCATACAAGTACCAGGAGGAATATAAATTAGCCATAGATGGCTTCAAGAGGGCTGGCATTTTAGACCCAGGTTGGATCGAACCTTGTGATGAGAAACTTAAGCTGATGAACATCTTAACAAAAACAATCGACCTTGTAGAGGGAAAGGGTAAATTGAAAGGCAAGAGGCTCCATTCCATGGTTCAGTCCTTGGGTCCATCAGATTTGGGCCCATATGGAGGTGGCAGTTACACCAGTCCATCAGGCCAAACAGTCCAGCTTAATCATATTCCAGTCTCCAAACTGGTTTCTGGCTCAAATTATAATACAGTGATTGTGGGAAAAGTTGTCGGCTCTGTTCCAATGGATGATCCAGTACCATATATCTTTGCCATGGTGGACTGTGAAGATTGTTGTTTACCAGTTACTGTTTACAACATGGCAGCAGGAGCTGGGTTTGCAGTTGGTGACTCTGTTGCTATCCCTGAACCTTTCTGTCAGGAAACTGATTTCTCTGAAACTAGCACAATGGAATGTGTGTTTTCACTGGTTATGCGGGGAAAACATCAGATTTCTCCTCACACATCATTACTTGATGAATACCTCaatctttcttttaaagaaattcacaGTGATTCAGAAGGTTTTGCGAAAATGTCTTTAGACATTGCGTCAAGTGTAGCTTTTCATCCCAACAGACAAGCGAATGGGGAACTTGCTGTGTCAATGTTAAAAAAGTGGCTGTCATCATATGGTCACCCATCAACAACCGGAGGACCAATTATAGCTTCTACAATCACAATTGAAGCCATTCAAGATCTGTTGCATTCAAGCGGCTTCCCTATTGAAGCGCCCCAACATGTAGACTTGTGTCCTGGACCATTTGAAGACACGCAATTTGATGCAGTTGTGGATGTTGAGACCTCTGATGATTGTATGAATGATGGAGCTGTTGCAGATCTGAAATTTACAGACCTTGACGCTTGTTCAGAATATGGATATGGTGGATCTGACCTATCAGATGATGAAATCAACTTTTTCCAAGATCTGCCGCTGAGTCCTGACTCACCATTGCTCTGTGATTCAGCTGATATTGACTTTGGATTTGATTCGGGAATTGAGGCTGAGATGGATGAACCTCATgATGGAGCAGAAGACAAGGATgggaaaaaagaggaaggaaaGACTTGTGAAGACAAGAAATCCACTGATGAATCAAAGCCAAACGACAGTCAGAATGAGCAGTCAAGTGCAATAAAGCCAGTAAACAAGGACACAAAAGCAAAGGACAAGATGAAGAGAGTAACAGAGGAGAAAGATGTTGAGGATGTTAAGGAAGAAGGCGAtgataaagatgatgaaaacGAAGATGATCTTCCGCACATTCACTGCCAATACCTGTGGGAGTTCCTTCATCAGATTTTGCTGGAAAAACAGAATAAGTATATTGCATGGAAAAATCAAACCAAAGGAGTGTTTCGTCTTCTTGACCACAATGGCTTGGCCCGCCTCTGGGGAAAAcagaagaacagaaaaaatatgACATACGAGAAACTTAGTCGTGCTCTCAGATACTACTACAGCAAAAACATCCTCAAAAAGGTGCCTGGTCAGAGACTGACTTACAAGTTTGTTCGAAATCTCAATGGAAAGAAGTATCCTAACTGA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006469 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00178 all species →	Ets	Ets-domain	Domain	Interproscan
PF16669 all species →	TTC5_OB	Tetratricopeptide repeat protein 5 OB fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR000418 all species →	Domain	Ets domain	Interproscan
IPR038645 all species →	Homologous_superfamily	TTC5, OB fold domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR046328 all species →	Family	ETS family	Interproscan
IPR032076 all species →	Domain	Tetratricopeptide repeat protein 5, OB fold domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11849 all species →	ETS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX28621.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.