Gene detail

Detailed information of PFX28684.1 in Stylophora pistillata

Genomic Location: Spis.scaffold78:424931...432800
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Lca5

ATGACTCTAGAATTCGAAAATCCACCGCTTCTGTCCAACATCGCTTTGAATTCGTCCTATAATAATGAGAAAGATTTCGGAGCGTTGGATCGAGTGAGGTCTAAGAAAACTTCAGTGATTTCTGTGACCAGGAGGGAAAGTCTCCTTGCTAGGGAGGAACTACAGGAAAAACGTGAAATGTCTGGCGAATATTCTGACAACTATGATAGTTATGATGATGATTTTGACAGCCCGAGTGCCACGAAAAATGCAACACGATCTCGGAGGTACTCCTCGAGACGCGAATCAAGAACATCAGAGAGGGCCCAATCAACGTCGAGATCACCGTCTGATTCACCTCCAAAACAGCGATCACGATCGAAAAAGGCGTCTACAAGGAGAGATTCCTTTGCTTCGTACCGAAGTGCATATGGCACAAACAGAGGCCCACCCAAAAATAAACCCAAGAAGAGCCAATCGGCTAGCTCTAAGATGACTACCAAAACCACGGGTGGGGAAAGTTCAATGATGAGGCGCGTGTTATCTGCTAACAAACACAAAGTTTCAAGACTTTACAATATCTTAGAAGAACTACAGCAAGAGGTCGAAGAACTTAAGGACGAGAATAAATCTCTGAAAAGAGTGAGCCATCGACAAGAAAAGCAAATTAAGAAAATCGACGAAGAGGAAGCAAGTTTGCCCATTTTGCTTCAAAGGCACAGTGCAGAGATGAGAACTTTGAAGGAGAGAATGAGAAAAAATCAAGAAGTTTTGCACAAGAAAGAAAGAGAGTCTAAAGATCGAGATGCTGAGATTCAGAAACTGCGTGATCAAGTGAAAAATTTCCGTGCGCTATCACAGGATAGGAAACTAGAAGAACGAGCGGCTTTGGCAAAAAAACTGGAGAACGTCCAGGACGAAATAGCGACAAAAGACAAAAAGATTTTGGATCTACAGAAAGCTATCGCACTCAAAGACAAGGCAAGACAACGAGAGATGAAGGACCAAAAAGACCGTTACAAGCAGGCCAAAGAAGAATTAAAACGTGTCCAAGAGGATTTTCGTTCGCTTCGAGAAAGACTGAAGGAAAAAGAAAGAGAACTGGATGAGAAAAACATCTATCATCAACATATTGTGCAGAAGAAAAAGAGAGGCCCAGATTTACCAGCCCTTCCTGCGGGCAGCCAGGACATTCATGCGCCCGCTGTTACTGCTCCAGCGGTTCACATTGAAAAAACACCAGATACGAAAAAGAAAAGAACAAATGTGTTTCTGACAAATGCGGCGAGTGACTCTGGTTCGGTTGTAACGGATGAAGGGAGGGACACAGACGAGAAGTCTGAAAAAGTCAGCGTTAAACATGAACATCCCGTGGTTTCTAAACAGATGAGACATGATGAGGTTTTCCAAGTTGATGGGAAGGAAGACGAAGGGAGAAAAATGAGAGACCCTGAGGAGAGAAGAAGACGCGAGGAGGAAGCGGACCAGAGACGGCGCATGGATGAGGAAGAGCGCAGAAAAAAAGAGGAGGAAGAGAAACGAAGGGAAGAAGAACATGCACAGAGATTGCGAGCAGAGGAGGAACAATTAAGGAAACAACGGGAGGATCAGGAACGCGCCAGGAAGCAAAAGGAAGAAGAAGATAAAAAACGGTTTGAGGAAGAAGCTGAGATTAGACGGAAGAAAGATTTGCTGCTGGCTCGCATGCGAGCAATTGATGTGGGAAACGAGAAGCCAGACGCTGTAACGGCAACCGGAGGCACTTCTGGTGTCCCTGTGGAAGACAAACCTAAAAAACTTCCGATTTTCCTTCAGAGTGAGAAGCCTGTGAAAACAGAAGAGGAGCCTTCGAAGCCTCTATACGCGGCAAATCCAGATGACGATGTTCTGTCCGATACTAGTAGCGGCCGAAAAAAGCTCAGTGCAAGCTCTAGACAAAGCCGCTTCTCTTACGATTTCAAACAAACTGTAGAAAACCTTCATCATGGACTCCCTGCGCATGCTGCACAGGAAGGCGTAAAGCCAGAGGCCCAAAAGCCGGACACGAAAGACTCTCTGTCGGACGATCTAAGTTTCGGTTCTTATAAACCTACACTGGGCAGGAGGGCTGCTACCAAAAGAGACAATAAAGACGATTTGAGTTTTGGAGGGTACAATCCTTCATTTGGTTCGCAAAAAGAGACAACTCGCAAAAATAGCGGTCTTAATTTTGGCGCCGGGAAGAAAAACGCTACTGAAAAAGAACAAAACGGTGTCATCTTTGAGGATTATAATCCTTCGTTTGGAGCAGCGTCAAGTAAGCCAGCAGCTTCTAGCCAACCAAACGGTGATATTGGAGGAAAGACAAGCCCCCCACGTGGTCGCAGACCTAGAGCTCACGGTGGTAAACCAGCTTCTTTGTTTGACGACGATCTTTTTGCAAACGAGGAAGTCAAACCTACGGGGAATCCTCTGTTTGGAGACAGATCCGTAAAAAAGGACACATCATCTTACCCGTGGGAAAACAAAGTAAATGTTACTAGATCCAAGGAATCCCAGGAGGATTCCCTCCTGCCTCGCAGAAAACATTTGCAAAGTATTGGAAAGAGCACAGAGAAAAATGTTCGCGCCGTGGATAATGCGCTGGATGATATTGATGACGAGATTGAGGAAGTTATTCTATAA

Transcript

rna-Spis6561_mrna

TGTTTGTGCAGCACTGCTAACGACTCACATAGTAACAGTAATTTTCCACGAGATAGCTGTGGATCGATCGAAGCATCATTTGTCCTTAAAATACTACAAACGGAACTCTAGAGTCCTGTTATGACTCTAGAATTCGAAAATCCACCGCTTCTGTCCAACATCGCTTTGAATTCGTCCTATAATAATGAGAAAGATTTCGGAGCGTTGGATCGAGTGAGGTCTAAGAAAACTTCAGTGATTTCTGTGACCAGGAGGGAAAGTCTCCTTGCTAGGGAGGAACTACAGGAAAAACGTGAAATGTCTGGCGAATATTCTGACAACTATGATagttatgatgatgattttgACAGCCCGAGTGCCACGAAAAATGCAACACGATCTCGGAGGTACTCCTCGAGACGCGAATCAAGAACATCAGAGAGGGCCCAATCAACGTCGAGATCACCGTCTGATTCACCTCCAAAACAGCGATCACGATCGAAAAAGGCGTCTACAAGGAGAGATTCCTTTGCTTCGTACCGAAGTGCATATGGCACAAACAGAGgCCCACCCAAAAATAAACCCAAGAAGAGCCAATCGGCTAGCTCTAAGATGACTACCAAAACCACGGGTGGGGAAAGTTCAATGATGAGGCGCGTGTTATCTGCTAACAAACACAAAGTTTCAAGACTTTACAATATCTTAGAAGAACTACAGCAAGAGGTCGAAGAACTTAAGGACGAGAATAAATCTCTGAAAAGAGTGAGCCATCGACAAGAAAAGCAAATTAAGAAAATCGACGAAGAGGAAGCAAGTTTGCCCATTTTGCTTCAAAGGCACAGTGCAGAGATGAGAACTTTGAAGGAGAGAATGAGAAAAAATCAAGAAGTTTTGcacaagaaagaaagagagtCTAAAGATCGAGATGCTGAGATTCAGAAACTGCGTGATCAAGTGAAAAATTTCCGTGCGCTATCACAGGATAGGAAACTAGAAGAACGAGCGGCTTTGGCAAAAAAACTGGAGAACGTCCAGGACGAAATAGcgacaaaagacaaaaagattttGGATCTACAGAAAGCTATCGCACTCAAAGACAAGGCAAGACAACGAGAGATGAAGGACCAAAAAGACCGTTACAAGCAGGCCAAAGAAGAATTAAAACGTGTCCAAGAGGATTTTCGTTCGCTTCGAGAAAGACTGAAGgaaaaagaaagagaactgGATGAGAAAAACATCTATCATCAACATATTGtgcagaagaaaaagagaggCCCAGATTTACCAGCCCTTCCTGCGGGCAGCCAGGACATTCATGCGCCCGCTGTTACTGCTCCAGCGGTTCACATTGAAAAAACACCAGatacgaaaaagaaaagaacaaatgtGTTTCTGACAAATGCGGCGAGTGACTCTGGTTCGGTTGTAACGGATGAAGGGAGGGACACAGACGAGAAGTCTGAAAAAGTCAGCGTTAAACATGAACATCCCGTGGTTTCTAAACAGATGAGACATGATGAGGTTTTCCAAGTTGATGGGAAGGAAGACGAAGGGAGAAAAATGAGAGACCCTGAGGAGAGAAGAAGACGCGAGGAGGAAGCGGACCAGAGACGGCGCATGGATGAGGAAGAGCGCAGAAAAAAAGAGGAGGAAGAGAAACGAAGGGAAGAAGAACATGCACAGAGATTGCGAGCAGAGGAGGAACAATTAAGGAAACAACGGGAGGATCAGGAACGCGCCAGGAAgcaaaaggaagaagaagataaaaaacGGTTTGAGGAAGAAGCTGAGATTAGACGGAAGAAAGATTTGCTGCTGGCTCGCATGCGAGCAATTGATGTGGGAAACGAGAAGCCAGACGCTGTAACGGCAACCGGAGGCACTTCTGGTGTCCCTGTGGAAGACAAACCTAAAAAACTTCCGATTTTCCTTCAGAGTGAGAAGCCTGTGAAAACAGAAGAGGAGCCTTCGAAGCCTCTATACGCGGCAAATCCAGATGACGATGTTCTGTCCGATACTAGTAGCGGCCGAAAAAAGCTCAGTGCAAGCTCTAGACAAAGCCGCTTCTCTTACGATTTCAAACAAACTGTAGAAAACCTTCATCATGGACTCCCTGCGCATGCTGCACAGGAAGGCGTAAAGCCAGAGGCCCAAAAGCCGGACACGAAAGACTCTCTGTCGGACGATCTAAGTTTCGGTTCTTATAAACCTACACTGGGCAGGAGGGCTGCTACCAAAAGAGACAATAAAGACGATTTGAGTTTTGGAGGGTACAATCCTTCATTTGGTTCGCAAAAAGAGACAACTCGCAAAAATAGCGGTCTTAATTTTGGCGCCGGGAAGAAAAACGCTactgaaaaagaacaaaacggTGTCATCTTTGAGGATTATAATCCTTCGTTTGGAGCAGCGTCAAGTAAGCCAGCAGCTTCTAGCCAACCAAACGGTGATATTGGAGGAAAGACAAGCCCCCCACGTGGTCGCAGACCTAGAGCTCACGGTGGTAAACCAGCTTCTTTGTTTGACGACGATCTTTTTGCAAACGAGGAAGTCAAACCTACGGGGAATCCTCTGTTTGGAGACAGATCCGTAAAAAAGGACACATCATCTTACCCGTGggaaaacaaagtaaatgtTACTAGATCCAAGGAATCCCAGGAGGATTCCCTCCTGCCTCGCAGAAAACATTTGCAAAGTATTGGAAAGAGCACAGAGAAAAATGTTCGCGCCGTGGATAATGCGCTGGATGATATTGATGACGAGATTGAGGAAGTTATTCTAtaaaaaagagttttaaaaaaataatctagATTATATTGTACACAATTATTTGAGAAACGCATTACCTTTCGCCTACAAGATCTTCGGACAATTTGAGAAGTTAGCatctgacattttttttgttgtccATTTGCAAGAACTTCCATTAATTTTCTTAAGTATCGTTTGTTATTGAGGCTAAACTCGAAGGATGTCGCGTTTTTATCGAAGACGTAAATCTcaccaataaaaatattttct

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15619 all species →	Lebercilin	Ciliary protein causing Leber congenital amaurosis disease	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028933 all species →	Domain	Lebercilin domain	Interproscan
IPR026188 all species →	Family	Lebercilin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16650 all species →	C21ORF13-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24828	LCA5; lebercilin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.