Gene detail

Detailed information of PFX28709.1 in Stylophora pistillata

Genomic Location: Spis.scaffold78:614493...622179
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

tfb1m

ATGTCTGCCAATCCACGACCTCTTCGCCTTCCTCCCATGCCAAAAGTAGCCGACCTCCTTCGTGTATACGGGCTGTCCGCGAAGAAGCAACTTAGCCAAAATTTCATTCTTGATCTGAACATTACAGACAAGATTGCAAAAGTTGCAGATGTGTTTGATTGCCATGTTTGTGAAGTAGGAGCTGGTCCAGGATCACTTACAAGGTCCTTGCTGCATGCAGGAGCCAAACATGTTGCTGCTGTGGAAATTGACAGAAGATTTCTTCCCTCGTTAGAGTACGGCTTCCGTCGCATGCGCTCTACTGAACTGGCCGTTACTCATCTAACCGATGTTATCAGAAGAGAAGGTGAGAATGGTAACCTGACAGGCTGTGTTTTCATCGATCTATCAAAGGCGTTTGACACCATCAGTCACTCTGGCCTCCTGAGCAAGCTTTCAACTTACGGAGTTCGTGGAACAGAACTCGCATGGTTCACTGATTACCTTTTCTGCAGATCACAAGTTGTCCAATATAAAGGCGTGCTATCAGAACCTCAACCCATTCTCACAGGTGTTCCTCAGGGAAGTATCCTGGGTCCTATCTTATTCATTATCTTTTTCAACGATGTACATAAACCGCTTCAACACTCGAAGATTATCACTTATGCCGACGATTCAGTCATCTATACCTCTTCTAAAGATATTGATACTATACAGAGAAGCCTTAGCGAGGATATGAATAACCTGTGCGAGTGGTTTAAAGACAACGAACTGATCATTAACCTAAAAAAGGACAAGACGGAGTCTATGTTATTTGGAACAGCTAAAAGAATCAACCTTCAAGACAAGGAACTTAAACTTTCTGTTAATGGGACACTCATCAATAACACCTCTACCTATAAGTACTTAGGTGTTCACCTTGACTCATCACTAAACCTTGCATCACATTTTGACCGAATCTATAAAAAAGCTGCAACCAGAATTAATCTCTTGCGATCAATTCGTCCTTTGATCGACCAAAAGTGTGCAGAATCGATCTATAACACTATGATCGCACCTATTTTTACCTATTGCGGAACACTTGGTCTTAGCTTTCCGGATTACCGAAAGGAAATGATAAAGAACATCGAACGACGAGGCTTTAAAGTTATTGGCAATAGTTCTTTTAATCCCCCATCCGTGAACAATTTGATCAAGCGTAAAAGCTGTTTGTTTGTTTTCGACTGTCTCCTGAATAATGTTTGCACACCCTTTAAGAACTACTTCGAAAGACTGGTTCATTCTAAGGCCACTAGGAATAACGGTATATCAGTGAAATTACCCAAAATGCTTGAAAGTGCCAGCAGAGGAAGACTGTCGATACATCATGCAGACATCATGAAGTTCTACATACCAGATGCTTTACCAAAAGCTGATACTGTGCATTGGAACTCAGATGTTCCAGGTGTTCGTATGGTGGGTAATCTTCCATTCAATGTATCCATTCCTCTTCTTCTGCAATGGCTTGAAGCAATTCCGCAGAGAGCTGGGCCATTCACATTTGGTAGGACACCAATGGCACTTGTGTTCCAGAAAGAAGTGGCAGAGAATATCCAGGCTCCTCCTGGAGACAGGGAATGCACACGCCTTTCCATTATGACCCAGTATCTGTGTGAAGTCAACAAGAAGTACTTGATACCAAGCAAAATATTTGTACCAGAACCAAAGGTTGATGCCATGCTGTTACGTTTTGTACCAAGGGTCACTCCCCTTATTGAAGCTCCGTTCGTTGTAGTGGAGCAAGTAGTGAAAGCAATATTCTCAGAAAGACGGAAAACCATTAGAAATTCGCTACGGACACTGTTCCATACAAAGCCAGAATTATCGGAGGAGCTCTTCGCGAGGACCGGGGTTGATTCCACTCTTCGTCCCAACCAAGTTAACTTCAAGGATTATGGGAAGATTTGTCACTCATTTATAGAAATATCACGTGAACATGACATGCCAATCACGCCTCTTAGAATGCGCAAGCCTGTTGCCGTGGCAACGAAGAAAAACAACACAGATGTGGACGCTCGCACCAGTTATCAAATCACGCAGTAA

Transcript

rna-Spis6577_mrna

ATGTCTGCCAATCCACGACCTCTTCGCCTTCCTCCCATGCCAAAAGTAGCCGACCTCCTTCGTGTATACGGGCTGTCCGCGAAGAAGCAACTTAGCCAAAATTTCATTCTTGATCTGAACATTACAGACAAGATTGCAAAAGTTGCAGATGTGTTTGATTGCCATGTTTGTGAAGTAGGAGCTGGTCCAGGATCACTTACAAGGTCCTTGCTGCATGCAGGAGCCAAACATGTTGCTGCTGTGGAAATTGACAGAAGATTTCTTCCCTCGTTAGAGTACGGCTTCCGTCGCATGCGCTCTACTGAACTGGCCGTTACTCATCTAACCGATGTTATCAGAAGAGAAGGTGAGAATGGTAACCTGACAGGCTGTGTTTTCATCGATCTATCAAAGGCGTTTGACACCATCAGTCACTCTGGCCTCCTGAGCAAGCTTTCAACTTACGGAGTTCGTGGAACAGAACTCGCATGGTTCACTGATTACCTTTTCTGCAGATCACAAGTTGTCCAATATAAAGGCGTGCTATCAGAACCTCAACCCATTCTCACAGGTGTTCCTCAGGGAAGTATCCTGGGTCCTATcttattcattatctttttcaacgATGTACATAAACCGCTTCAACACTCGAAGATTATCACTTATGCCGACGATTCAGTCATCTATACCTCTTCTAAAGATATTGATACTATACAGAGAAGCCTTAGCGAGGATATGAATAACCTGTGCGAGTGGTTTAAAGACAACGAACTGATCATTAACCTAAAAAAGGACAAGACGGAGTCTATGTTATTTGGAACAGCTAAAAGAATCAACCTTCAAGACAAGGaacttaaactttctgttaatGGGACACTCATCAATAACACCTCTACCTATAAGTACTTAGGTGTTCACCTTGACTCATCACTAAACCTTGCATCACATTTTGACCGAATCTATAAAAAAGCTGCAACCAGAATTAATCTCTTGCGATCAATTCGTCCTTTGATCGACCAAAAGTGTGCAGAATCGATCTATAACACTATGATCGCACCTATTTTTACCTATTGCGGAACACTTGGTCTTAGCTTTCCGGATTaccgaaaggaaatgataaagaacatcgaacgacgaggctttaaagttattggcaatagttcttttaatcccccatccgtgaacaatttgatcaagcgtaaaagctgtttgtttgttttcgactgtctcctgaataatgtttgcacaccctttaagaactacttcgaaagactggttcattctaaggccactaggaataacggtatatcagtgaaattacccaaaATGCTTGAAAGTGCCAGCAGAGGAAGACTGTCGATACATCATGCAGACATCATGAAGTTCTACATACCAGATGCTTTACCAAAAGCTGATACTGTGCATTGGAACTCAGATGTTCCAGGTGTTCGTATGGTGGGTAATCTTCCATTCAATGTATCCATTCCTCTTCTTCTGCAATGGCTTGAAGCAATTCCGCAGAGAGCTGGGCCATTCACATTTGGTAGGACACCAATGGCACTTGTGTTCCAGAAAGAAGTGGCAGAGAATATCCAGGCTCCTCCTGGAGACAGGGAATGCACACGCCTTTCCATTATGACCCAGTATCTGTGTGAAGTCAACAAGAAGTACTTGATACCAAGCAAAATATTTGTACCAGAACCAAAGGTTGATGCCATGCTGTTACGTTTTGTACCAAGGGTCACTCCCCTTATTGAAGCTCCGTTCGTTGTAGTGGAGCAAGTAGTGAAAGCAATATTCTCAGAAAGACGGAAAACCATTAGAAATTCGCTACGGACACTGTTCCATACAAAGCCAGAATTATCGGAGGAGCTCTTCGCGAGGACCGGGGTTGATTCCACTCTTCGTCCCAACCAAGTTAACTTCAAGGATTATGGGAAGATTTGTCACTCATTTATAGAAATATCACGTGAACATGACATGCCAATCACGCCTCTTAGAATGCGCAAGCCTGTTGCCGTGGcaacgaagaaaaacaacacaGATGTGGACGCTCGCACCAGTTATCAAATCACGCAGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00398 all species →	RrnaAD	Ribosomal RNA adenine dimethylase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001737 all species →	Family	Ribosomal RNA adenine methyltransferase KsgA/Erm	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR023165 all species →	Homologous_superfamily	rRNA adenine dimethylase-like, C-terminal	Interproscan
IPR020598 all species →	Domain	Ribosomal RNA adenine methylase transferase, N-terminal	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11727 all species →	DIMETHYLADENOSINE TRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000179 all species →	Molecular Function	rRNA (adenine-N6,N6-)-dimethyltransferase activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006391 all species →	Biological Process	transcription initiation at mitochondrial promoter	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan
GO:0034246 all species →	Molecular Function	mitochondrial transcription factor activity	Interproscan
GO:0000154 all species →	Biological Process	rRNA modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX28709.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.