Gene detail

Detailed information of PFX28781.1 in Stylophora pistillata

Genomic Location: Spis.scaffold77:835777...843985
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PUS7

ATGTATGATGGCTCAGTTTTCAAAATGGCGGACGAAATTGTTAATCATAATCTTTACGAACCGCAGTTCAAACGCCCTAGAATAGTTTCAGAATCCGCGAAAACGAGCGATGACAGAGAGGCTGATAAATTAGGTTTAGATAAAAATGGAGAACAAGCGAACTGCCATCAAAGAAACGAGACCGATGGAAAACTTCGAAGTGAAATTATTATTGGTACAAAGCACGTGCTTAATGAAAACCCAGAAGAGACCGACGAAATGAGGGCAAGTACAGAGCAAGGAAAAGATTCATCGGTTGGAAAAGCATCTGAAGATGGCTCTGATATCTTGAGAGAAACTTGTGTTTCGGAGAAGGACGTTGGAATTTTGGAATTCGTGGCCAACTTACCCGGATTTCATGGAGTCCTGAAACAGAGATACACGGATTTCATCGTCAGAGAGAGGGACCTCCAGGGAAATATTGTGCGATTAACTGATACATCTTTACCTCGGAAAGAAAAGAGTCAAGAATTTGGGCTTGATATTTTAAGTGAAGAAGAGAAAATGAAAATTAAACAAGTTATTGATGATGAGGAGAAGAAAACCTCAGTGACTTTATCACCTGATGATGACAAGGACCACAGAAGATTGGTTCACAGAGCCATCAGAGAAAACTTTGCCTTTTTAGATAGTGACACAGTTGATGTAGGGAACCAAAAGGCAGTCCGAGTATTTCATAACCGTGATTCAGATGGCAAGCAAAGGAGCAGCCGATGGCCAGCAGAACTTGGAGATTATTGCTGGTTTGTTCTCTACAAAGAAAACAAAGACACTATGGATGCAATTAATCTATTGAGCAAACTTCTTAGAATCAAAGCAGGGAGTTTTGGTTATGCTGGAACCAAGGACCGCAGGGCAGTAACTACCCAAAAAGTGTCTGTTTACAGAGTAAAGGTTGAACAATTACAGGAATTAAACAAAAGTCTTCGAAACATATGTCTTGGCAACTTCCAGTATTGTAAAGAGCCTCTTAAACTTGGCTCTTTATCAGGGAATCATTTTGTCATCACACTCAGGAATGTAGTTGGGGATCATGGAGAGATAGAAGAAAGTTTGAAATCACTGAAAATCAATGGTTTTATAAATTACTTTGGATTGCAAAGGTTTGGGACAACCTCAGTTCCCACACATAAAATAGGCTGTGCGTTGCTTCTTAGTAACTGGTCTGAGGCCGTTGATCTGCTTCTTAATCCACGTTCTGGTGAAGCAGATGACCTCACAGCTGCTCGGCAACACTGGAAAGACACCCATGATGCTAAGGAGACTCTGAAAAGACTTCCTAAAAGGAAAGGAATTGAGAGTGACCTTTTACTTGGCCTTGTGAGGCATGGACCTTCAGGTTTGGTGAAAGCCCTCCAGTCCATCTCCAGGAACACCAGACTCATGTATGTCCATGCATATCAAAGCTACGTATGGAACTACATGGCATCCAAGCGCATTAAGGAGCACGGAATGCAGCCAATCGTAGGTGACCTGGTTGTGGCTTCAAAATCAGCAGCACCATGTACCACAGACACAGGGCCGCAAGACAAGGTTGAATTTATTTCCGAGCCAAGCAGAACATCGGTTACCGTTGTTACCGAGGAGCTGATCAAAACAGGGCAGTTCACAATCCATGACGTTGTTCTTCCACTTCCTGGATACGACGTTGCATACCCTAACAACAGCTTGAAAGCTGAGTACAGAAAAATAATGGCCAACGACGGACTGGACATCGAGAACATGAGGCATAAAGTAAAGGACTACTCCCTGTCGGGCGCTTATCGGAAATTACTCGTCAAGCCGAGCCTCACGAGCTGGCGCTGGTTGCGTTACAATGACGTCAAACAACCGTTAGTTGTAACCGACAAGGAAGCTATGTCTGGTGCCCAGGAGCCCGAGTCAGTTCCAGACGGAAAGTACTGGGCGCTACAATTGGAATTTACGTTACCCACCTCAGCGTATGCTACGATGGCCTTACGTGAGGTTCTGAGGAGTGATACGTCATCTGCTTATCAATCCACTCTCAACCAGGAATGA

Transcript

rna-Spis6528_mrna

ATGTATGATGgctcagttttcaaaatggcggacgaaattGTTAATCATAATCTTTACGAACCGCAGTTCAAACGCCCTAGAATAGTTTCAGAATCCGCGAAAACGAGCGATGACAGAGAGGCTGATAAATTAGGTTTAGATAAAAATGGAGAACAAGCGAACTGCCATCAAAGAAACGAGACCGATGGAAAACTTCGAAGTGAAATTATTATTGGTACAAAGCACGTGCTTAATGAAAACCCAGAAGAGACCGACGAAATGAGGGCAAGTACAGAGCAAGGAAAAGATTCATCGGTTGGAAAAGCATCTGAAGATGGCTCTGATATCTTGAGAGAAACTTGTGTTTCGGAGAAGGACGTTGGAATTTTGGAATTCGTGGCCAACTTACCCGGATTTCATGGAGTCCTGAAACAGAGATACACGGATTTCATCGTCAGAGAGAGGGACCTCCAGGGAAATATTGTGCGATTAACTGATACATCTTTACCTCGGAAAGAAAAGAGTCAAGAATTTGGGCTTGATATTTTAAgtgaagaagagaaaatgaaaattaaacaagttaTTGATGATGAGGAGAAGAAAACCTCAGTGACTTTATCACCTGATGATGACAAGGACCACAGAAGATTGGTTCACAGAGCCATCAGAGAAAACTTTGCCTTTTTAGATAGTGACACAGTTGATGTAGGGAACCAAAAGGCAGTCCGAGTATTTCATAACCGTGATTCAGATGGCAAGCAAAGGAGCAGCCGATGGCCAGCAGAACTTGGAGATTATTGCTGGTTTGTTctctacaaagaaaacaaagacactATGGATGCAATTAATCTATTGAGCAAACTTCTTAGAATCAAAGCAGGGAGTTTTGGTTATGCTGGAACCAAGGACCGCAGGGCAGTAACTACCCAAAAAGTGTCTGTTTACAGAGTAAAGGTTGAACAATTACAGGAATTAAACAAAAGTCTTCGAAACATATGTCTTGGCAACTTCCAGTATTGTAAAGAGCCTCTTAAACTTGGCTCTTTATCAGGGAATCATTTTGTCATCACACTCAGGAATGTAGTTGGGGATCATGGAGAGATagaagaaagtttgaaatcacTGAAAATCAATGGTTTTATAAATTACTTTGGATTGCAAAGGTTTGGGACAACCTCAGTTCCCACACATAAAATAGGCTGTGCGTTGCTTCTTAGTAACTGGTCTGAGGCCGTTGATCTGCTTCTTAATCCACGTTCTGGTGAAGCAGATGACCTCACAGCTGCTCGGCAACACTGGAAAGACACCCATGATGCTAAGGAGACTCTGAAAAGACTTCCtaaaaggaaaggaattgaGAGTGACCTTTTACTTGGCCTTGTGAGGCATGGACCTTCAGGTTTGGTGAAAGCCCTCCAGTCCATCTCCAGGAACACCAGACTCATGTATGTCCATGCATATCAAAGCTACGTATGGAACTACATGGCATCCAAGCGCATTAAGGAGCACGGAATGCAGCCAATCGTAGGTGACCTGGTTGTGGCTTCAAAATCAGCAGCACCATGTACCACAGACACAGGGCCGCAAGACAAGGTTGAATTTATTTCCGAGCCAAGCAGAACATCGGTTACCGTTGTTACCGAGGAGCTGATCAAAACAGGGCAGTTCACAATCCATGACGTTGTTCTTCCACTTCCTGGATACGACGTTGCATACCCTAACAACAGCTTGAAAGCTGAGTACAGAAAAATAATGGCCAACGACGGACTGGACATCGAGAACATGAGGCATAAAGTAAAGGACTACTCCCTGTCGGGCGCTTATCGGAAATTACTCGTCAAGCCGAGCCTCACGAGCTGGCGCTGGTTGCGTTACAATGACGTCAAACAACCGTTAGTTGTAACCGACAAGGAAGCTATGTCTGGTGCCCAGGAGCCCGAGTCAGTTCCAGACGGAAAGTACTGGGCGCTACAATTGGAATTTACGTTACCCACCTCAGCGTATGCTACGATGGCCTTACGTGAGGTTCTGAGGAGTGATACGTCATCTGCTTATCAATCCACTCTCAACCAGGAATGAAACGTGGATGCACAGACTTAGAAAGCTTTAAACTTCAAAGACACAAAAGGGCCGACGTGTGTTTTTATGAACTTTTACTAACCGTCACTTGCAAGAATTGATTGCTTGTAACCCTGGTTGTTAAATCTGAAAATGTGATTCGCTTTTGTAACCTTTCCATTTGTCTGCCTGACCTATCATAACTATTGAAGCAAGAAAAGACTCATTGATCCCTTCTGAAAGTGATGAAGTGAAATCTCTTCTGAAACAGCGCCTTGTGGAAGGAAAAGACGATTTAGATTTTCCCTCGTGGACTGCGAAACAACAGTTTAAGGTAAATCAACTTTCAAATGGGCGTTTTTTTGGCCATCTACTTTTTTCAGGCGAATAAATTCCGCTTTCCTTGAGGCGGGAATAAGATGAAATGGATCTTACAAATTCGGTTGTATGGCGTTTGTCGCGTATGTCATGTACAAGTATGTCGTGCCAATAGGTAATGATATAAGTGTAACAAAATAAGTAAgcaagaaaactattttttttttgttatagttTCTCAACGATTTACAACCGGTGACACGTTTAGTACTCTCACGAACTCGATCAATCATGTTCTGCTACAACGTATTTACACTGTACATTGCTTCACTGTTGTGGCAGCAAAACTTTAGGTAATCTTGATCAACTGACCTTCGTCAAGTTGTTAAATCTGAATACAATTTTGTACTTTTGCTTAGATAATACTTTAGTACCGATAACAATTGCTTCTTATGCGAATGTCTGACAGTATATACTTCATCTCTCTTTTTGTTACGATTACGCAAGCAGTTTTCGAACGTCTGGCTCGTTGaaagtttgtaaataatttGCCCATTTCTGGATTGGCTGTTGGTCATTTGTTGCAGTTTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01142 all species →	TruD	tRNA pseudouridine synthase D (TruD)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001656 all species →	Family	Pseudouridine synthase, TruD	Interproscan
IPR042214 all species →	Homologous_superfamily	Pseudouridine synthase, TruD, catalytic domain	Interproscan
IPR020119 all species →	Conserved_site	Pseudouridine synthase TruD, conserved site	Interproscan
IPR001374 all species →	Domain	R3H domain	Interproscan
IPR011760 all species →	Domain	Pseudouridine synthase, TruD, insertion domain	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13326 all species →	TRNA PSEUDOURIDINE SYNTHASE D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06176	truD, PUS7; tRNA pseudouridine13 synthase	EC:5.4.99.27	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.