Gene detail

Detailed information of PFX28823.1 in Stylophora pistillata

Genomic Location: Spis.scaffold76:158564...169101
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis6413_mrna

GCGACGTGAATCCAGTGTGGCGATatgattagttttctttttggcTTGTCGTTGCGATATTTTCCTAAAATTCGAACTTTTACAGGGAGCATACCCTCCCCCAAAAGTCACACTGGCAGTTTTGATGAGTAATAGGAAATATCCGAGGCTAGCGGACGGgTATAATGACCGGAGTCAGTATCATCCATGCCAGgcAAGTTCCAAGTTCTCGTCGAAAATCCATTCCAACTGCAATTCGGAGAGTGGTCGAGAGAGGGAGAGATCGCCAATTAGTTCAACGAATAGTCGAGGAGGTTCACCGTACCCCCGTCATTCAAACTTTTCCCCCCGTTCCCATCGATCAAAGCCCTACAGTCGATCACGAGAAGGAAACAAGAGAGGTTCTAGCAAGTCTCCAACTGATGCACACAGTCATCATACCCTTCCTAACAGTAACTCGCATGGCAGTGAGCGCCACAGCAAGCCCAACCATGTCAACAGTGACGAGaCTTTTGTTTGGTCTCAGCACACCAGTTCTTCAGGGAAGGTTTACTATTACAACTGTAAAACAGAAAAGTCCCAATGGGAAAAGCCAAAAGAATGGCTTGAACGagaaagaagagagaaagagaggaaagacagagaaaaaagagattttGTGGCAGCCAAAGATGGACGGGAAAACCGAGAGCATCTGGCTTCCTCCAAACCCAGCAAATACATTTCCCCTTCAAAGAATATTCATCGAGATCATCATAGCTCAAGTGATAAGCGAGATGGAAACCATACAGAGAGTAGGAACATGTCCACTgagcagaaaaaagaaatccagCAGAGACTGTTGGGAACAACTGACAGAGGATCTCCGGTTGTCAAAACTTCTTGTGTACACACAACTGCTCTTCCAACAGTTGTCTATAGACCTTCTCCTACTGTGGCTAATATGGGAGGAGAATCTGCTGTTTCACCCACTGGAAGCTTACAAGATGTTTCTCCTCCAACCACTCCTTCTTCACGCTCCAACATGTATGAGCCATCCTCACACACTCCTTCGCCAAATATAGTCACAGCGGTTTCACCTCAAGTTGCTCAGCAGCATGGAGTACCTTCTCCTCAATTCTCAACCCGGCATTCGGCAATGCCCTTAGCACCAAATGTATTCCCCCAAGCACCTGCAGTTACAGGTGCTCCAAGAGCAGTGCCACAGCAGTACCAGTATCCTGTAGGGCATCCTCATATTCAGAATGACTATAGACAGCAGTATGTGAATAGCAACAGTGCACCACCTTGGCTTCAAGTTAATAATGCGGCATTACCTCTCCCGGCAACACACGTCCCCTCACCCCAGCAACCAGTGATGTTTAACCAACAGATTTCTTCGCAGACAGCCCTTCATCCACTACAGCAAGCCACACTAGTGCTCCAACAAAGAAAGATGTCAGAGGCACAAGCTGGTGCTGCAGGGGTAGGGAATATGCAGCCATCGTATCCAGTGGCAACAGCCTCGACAGTGCCGCATGCAGCACCTCTTCCACAGCTAGCAGTCTCCCCAGTCTCTGTGGCCATGCATAGAAAGGAAGACAGATCACATGCTCACAGCTCACCTGGTTCTCCTGTGGTGTTTACTCAACATCCACCTGTACCAGTTGTAAATGACTCCAGCAGCTCGCATTCACATCACTCCTCGCACCAACAGCTTGCATCTAGCTCCAGTGTAGTGTCATCTAGTCCTCTTTCTCACTCCTCAAACGCGTCAAGTCCAGTACCTGCAGTTCAACCTGCAGTTCCTACTGTCAACTTACAGGCAATAGCAAAATATGTAGATAAAAATCTCACATCTCATTTGTCAGCCTGGCCAACTGAGGTGATGGATAGACAAttgCATAAACTATGGGAGGAAACaagttcattttcaaatgaTAGTGACAAAGCTAAAATAGAACAAATGCAGCTACAGTCTGAAGCAGGTTTTATGGAAATGAGACTAGAGACAGCAAGTAGAAGAATTTCTTCATTGAAAGGGATGACGAGGACTTTAGAAGCATTACTGGCTGATTCAGAGGCTAAATTCTTGTCCTAGTGAAATAATGAGTCGAGTTCAGTGAGAACTGGACATGATGAAGTCGAGCAAGAGAAAGCAAGCGAGAAATAGTGACAGCACAGATGGTACAGCTGCAATCTTCAAAGACCAAAATGATAGCTATAGTCATACCGCAGGAGCAATGTACAGAGCTGTTGATTAGGAAATCTTAAGGATGTGAACAATCACAACTAAACCCAGTCTTAGGTGACTTGCAGAGTAGTGAAAGATAAATTGGTAGGCTGTTAATACAATTCAAGTTTCTGTTTAATGAGGTAACTCTCTGTGTTGATGTTGAGTATTGGGTAGATATATTGCTTGGCAAAGCCAAGGGTATTTGTTAGGTTGAAACTCACACTCCACAGATCCCTGgtcttaatttcatttttttttttttttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202 all species →	Domain	WW domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR038867 all species →	Family	WW domain-containing adapter protein with coiled-coil	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15911 all species →	WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010506 all species →	Biological Process	regulation of autophagy	Interproscan
GO:1904263 all species →	Biological Process	positive regulation of TORC1 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23884	WAC; WW domain-containing adapter protein with coiled-coil	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.