Gene detail

Detailed information of PFX29018.1 in Stylophora pistillata

Genomic Location: Spis.scaffold72:35712...46553
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Elac2

ATGAGGGTTTTGCTAATATTAAGGAAGTTTCAATTACAGAGAACGTGTAATTTAATGGCAGCGTCTCTGAGTACGTCTAAACCAACGCCAAATGTTTATCTGCAAGTTGTCGGAACAGAAACTGGTGATACTAGTCCATCGTTATATCTGTTTGCTGATTCTCAGAGATATCTTTTCAATTGTGGAGAGGCAACTCAGCGGTTATGCGTTGAACACAAGCTGAGACTCTCAAAAGTGAACAATGTTTTCTTCACGCGGATATGTTGGGAGTACACTGGAGGTCTGCCTGGACTTGCACTGACATTTAGGGACTTTGGCAAATCAGACATTCGTCTTCATGGACCCAGCACCTTGTCTCATTTCATCTATGCCACACGATTTTTCTTGCAGCGTGAAAACTTGAAGTTTGATTGTGTTGGATTCACAGGGACAGATGAGGACAAGTATGAAGATGAAAATATAACAATATGGCCTCTTCTTTTAAATGATGGTGCTGTGAAATCAAGAGATGATTCGTCCACTTTGAGTGATGTAGATGATCTGCGATCAGTTAAAAGAGCAAAGATGGACAGTCCTGAGACATTCACTGCAGTTTGTTACATCTGCCAGCTTTCCTCTCTACCTGGGAAGTTTTTCCCTAAGAAAGCCATTGAGCTTGGTGTACCAAAAGGACCCTTGTTTAAAGACCTTGTTTCTGGGAATGTAGTTACCCTGGAAGATGGACAACAGGTGCATCCTCAGCAAGTAATGGGACGAGCTCAGCCTGGATCTGTTTTTCTTATCATTGAATGTCCCACAGTGGCATTTATTCAGTTATTGGTCTCCAATGAGCAGCTCAAAAAGTACTGGGAACAAGGGCCATGTTTAACACCTGTGATTATTGTACATCTGACACCAATGGCTATTTTCCAAAGTAAAGAATACGAACACTGGAGGAAAGGGTTTGGAGACAAGGTGTGTCATCTGTTGATTAACAAGGATGTGTGTGCAGCCCCCCTGGTGTTTCAGGCTCAAGCAACTGTACAGTGTAAATTAAACACCATAGATCCAGAGATTTTTCCCTTATTGGAAACCATGGACACACCTGCAATAAATCAAGATGACTTACCAAAAAATTGCTTTGCTGGAGAAAATTTACTCAAGTTTTATCTCAGAGAAGGCAAGCATCAAGGATTTGATAGGTCTGAGGTACTAGGGAAGTTAGATGTGGACTCAATCATTAAAGAAACTCAAACACTCTTGAATGAACAGTCTAAAGAGGTGTCAAGTGAAAGAGGCTTTGGGCAAAGAAGTACTGAACAAAAGGAATTATCATCAGCAGCAGGTACTTCCCGGTTATCACCAACCACCAGTGCGTCAGTGGTGAAGGATTTAATCAGGAGTCCACCTACAAATAGGAATACAAAAATTAATTTTGGGAATGCGCTCATAGACAGCTTGGAAGCTGTTGGAGTACATCTATTGGGCACTGAAAGGCGTGGTTCTAGTTTGAGTGAAAGAATTCAAATGAAAGTGAAGGAACGAGCATGGGAAAGGGAACACAAGGAGTATGAGGTAGTTTTCTTGGGAACTGGATCAGCAATTCCATCAAAATACAGAAATGTCAGCTCAACATTGATCAACATGAGTGAAAAGGACTCCATACTCCTTGACTGTGGTGAAGGTACCTATGGTCAGCTCTATCGACATTATGGTAAATACCTGGACCGTGTACTGAGGCGGCTCAAATGTGTTTTCATATCTCACATTCATGCTGATCATCACTTGGGTCTTATCCATATTTTAAAGAAAAGAGAAACTATAGATATGGAAAGTGATGTTGCAGATGATCTGGTAATCATTGGTCCTGCCAAAATAAGAAAATGGCTGGAGGAGTATAACAGATTCTGTGAGGACATTGAGTACAGGTTTGTGGACAGCAGGGACTTAGTTATAAAAGGCCGGTATGAAGATTACCAGTTTGTTACAGATTGCTTAGATGCAAGAGAGGTTTTAACAGTACCTGTAGATCACTGTCCACAGGCCTTTGGCTTGGTTATAGCACACAATCATGGCTGGAAGATTGTTTACTCTGGTGATACACGACCTTGCCCAGCACTGATTGAGGCTGGAAAAGGTGCTGATCTCCTCATTCATGAAGCCACTCTAGAAGATGAATTGATGAGTGAAGCTCTTGAGAAAAAGCACAGTACAACAACTGAGGCAATCACAAGTGGTGTGGAGATGGGTGCAAAGCTTATCATATTGAATCACTTCAGTCAACGTTATCCTAAAATCCCAGTGTTCAGTGAACAGTTTACAAAGTGTACTGGCATTGCATTTGATCACATGAAGGTTCATTCAAGCAATTTTTCAAAACTTCCACAACTTGTGGAACCACTCAAAGCTGTGTTTGCAAAGGAAATGGATGAAATGACCAAGAACTAA

Transcript

rna-Spis6183_mrna

CATGGCGTTCAGCAATCTCGTGAAATCTTCCAATACGTTTTTGCCTTCATTCTGAATGAGGGTTTTGCTAATATTAAGGAAGTTTCAATTACAGAGAACGTGTAATTTAATGGCAGCGTCTCTGAGTACGTCTAAACCAACGCCAAATGTTTATCTGCAAGTTGTCGGAACAGAAACTGGTGATACTAGTCCATCGTTATATCTGTTTGCTGATTCTCAGAGATATCTTTTCAATTGTGGAGAGGCAACTCAGCGGTTATGCGTTGAACACAAGCTGAGACTCTCAAAAGTGAACAATGTTTTCTTCACGCGGATATGTTGGGAGTACACTGGAGGTCTGCCTGGACTTGCACTGACATTTAGGGACTTTGGCAAATCAGACATTCGTCTTCATGGACCCAGCACCTTGTCTCATTTCATCTATGCCACACGATTTTTCTTGCAGCgtgaaaacttgaagtttgattgTGTTGGATTCACAGGGACAGATGAGGACAAGTATGAAGATGAAAATATAACAATATGGCCTCTTCTTTtaaatgATGGTGCTGTGAAATCAAGAGATGATTCGTCCACTTTGAGTGATGTAGATGATCTGCGATCAGTTAAAAGAGCAAAGATGGACAGTCCTGAGACATTCACTGCAGTTTGTTACATCTGCCAGCTTTCCTCTCTACCTGGGAAGTTTTTCCCTAAGAAAGCCATTGAGCTTGGTGTACCAAAAGGACCCTTGTTTAAAGACCTTGTTTCTGGGAATGTAGTTACCCTGGAAGATGGACAACAGgtgcaTCCTCAGCAAGTAATGGGACGAGCTCAGCCTGGATCTGTTTTTCTTATCATTGAATGTCCCACAGTGGCATTTATTCAGTTATTGGTCTCCAATGAGCAGCTCAAAAAGTACTGGGAACAAGGGCCATGTTTAACACCTGTGATTATTGTACATCTGACACCAATGGCTATTTTCCAAAGTAAAGAATACGAACACTGGAGGAAAGGGTTTGGAGACAAGGTGTGTCATCTGTTGATTAACAAGGATGTGTGTGCAGCCCCCCTGGTGTTTCAGGCTCAAGCAACTGTACAGTGTAAATTAAACACCATAGATCCAGAGATTTTTCCCTTATTGGAAACCATGGACACACCTGCAATAAATCAAGATGACTTACCAAAAAATTGCTTTGCTGGAGAAAATTTACTCAAGTTTTATCTCAGAGAAGGCAAGCATCAAGGATTTGATAGGTCTGAGGTACTAGGGAAGTTAGATGTGGACTCAATCATTAAAGAAACTCAAACACTCTTGAATGAACAGTCTAAAGAGGTGTCAAGTGAAAGAGGCTTTGGGCAAAGAAGTACTGAACAAAAGGAATTATCATCAGCAGCAGGTACTTCCCGGTTATCACCAACCACCAGTGCGTCAGTGGTGAAGGATTTAATCAGGAGTCCACCTACAAATAGgaatacaaaaattaattttgggAATGCGCTCATAGACAGCTTGGAAGCTGTTGGAGTACATCTATTGGGCACTGAAAGGCGTGGTTCTAGTTTGAGTGAAAGAATTCAAATGAAAGTGAAGGAACGAGCATGGGAAAGGGAACACAAGGAGTATGAGGTAGTTTTCTTGGGAACTGGATCAGCAATTCCatcaaaatacagaaatgtCAGCTCAACATTGATCAACATGAGTGAAAAGGACTCCATACTCCTTGACTGTGGTGAAGGTACCTATGGTCAGCTCTATCGACATTATGGTAAATACCTGGACCGTGTACTGAGGCGGCTCAAATGTGTTTTCATATCTCACATTCATGCTGATCATCACTTGGGTCTTAtccatattttaaagaaaagagaaactatAGATATGGAAAGTGATGTTGCAGATGATCTGGTAATCATTGGTCCtgccaaaataagaaaatggcTGGAGGAGTATAACAGATTCTGTGAGGACATTGAGTAcagGTTTGTGGACAGCAGGGACTTAGTTATAAAAGGCCGGTATGAAGATTACCAGTTTGTTACAGATTGCTTAGATGCAAGAGAGgtTTTAACAGTACCTGTAGATCACTGTCCACAGGCCTTTGGCTTGGTTATAGCACACAATCATGGCTGGAAGATTGTTTACTCTGGTGATACACGACCTTGCCCAGCACTGATTGAGGCTGgaaaaggTGCTGATCTCCTCATTCATGAAGCCACTCTAGAAGATGAATTGATGAGTGAAGCTCTTGAGAAAAAGCACAGTACAACAACTGAGGCAATCACAAGTGGTGTGGAGATGGGTGCAAAGCTTATCATATTGAATCACTTCAGTCAACGTTATCCTAAAATCCCAGTGTTCAGTGAACAGTTTACAAAGTGTACTGGCATTGCATTTGATCACATGAAGGTTCAttcaagcaatttttcaaaacttccaCAACTTGTGGAACCACTCAAAGCTGTGTTTGCAAAGGAAATGGATGAAATGACCAAGAACTAACCAACAGAAAACCTTGAATAACAGAAAGACAAAtactttgattttgctttgtttctttattgctaacattatttttaatatattacttcacactatttttttcttttttgctaaGTTCACAATGGTTCCAAAACTACTTGCAgacaaaaaatattacatttatatcTTTGCTCTTTTCTATACAAAAATTTTTACAGTGTACTAACATTTTGTCACATAAAAGtaacttcttttctttatcaCAAACAAGTGTCCAtattaaaaactttgaaaataatgtacaaaaACCATCATGCTTTACCTGAGTTATTAGATATGTTGTTCAAAACGGCTAAAAACATTGGAAAGTAGATTTTGAAGAACAAACCACTTAATATTTACAATTATAGACACAATTGACAACACATATGTAATGGCAGTCTGTAAGCATAAAAGCATCCTGGCACAAATCTCCTCTGACTTGCAGAGTGCTTGTGCTGAGACCAGCTCACAGGATAGTTAccaactaaaaataattatagtggtaaaaaataagtaaaaataggTTTACTGGAGGTTTCATTTGCATGAGGTGATGCCTTGAAAAAGTGCACCtgaattttgaaaggaaaataaaactactTAACAGCAATTCAAAGAAAGGTGAATTAATTCTTTTCAGCTAAGTGTTGAGAACAGCTGACCCTTCTTGAATgttagttaaaaagaaaactatacaAAAGTTGATGTTACTGACGTCTTGGGTTACCTGTATGGTGTatgtcttaaaaaaattgtttgagacAATGCATCTGATgtacaaaaaattttttcggtTTTCCTATTATGCTCAAcatgtaaaaattatttcaaggaAATAAGTATTTACAGCTAATGCACATAGTAAGCATGCAAATCTCAGACAATCATATTGTCCTTCATTATTGAGAAGTGTGTTCTACTTATGGATGAAGGTAGGGAACTGAAGAAAGTTCctgctaaaactgaattcactTAAATTTACATCtcattaaataagaatacaacaccttttcttttaagaaacaaagaaacttttTCTTGTAATCCCCTATCTCACTCCACTCATGGTACTATGTTTTTTCTATTACTaggacaaaaaataaataattgaaaaaacacACACCTCTGGTGTCATTGTTTGACCATTACTTTTTATCTCTCAATCAGTATTAACTACATGGACAAGGGGAAGTGCAATTTTGACAGTCAACAGTTGGCAACCTCTACTCACTACAAACCAGATTACCAGcacttacaaaaataatttacatgaagTCTAAGGATTCCCAATGGTTGATATCAACCCATCTCCACAGCAAGACAGTATTTTCTTGCAGCATAACCGAGCCCCACTTTGCATAATGCATCAGAAAGGGTGTTTAGATTGCAACGATCTGGGCACAAATCTCGCCATGCTAAAAGCACTTGATAAGCCTTTTCATACAAGCTATCGTTATTCCTGTGGCAGTCGTGTTCGATCTCTTTTATTTTGGTATCACCAACACCCAACTCTCGGCCCAGCTGTTTCCATTCTCTAATGTGTCGTGAAAGGTCATGGAATTTCTCTTCCCAATTGACAGATTCAAGCAGTCGCCTTTTGCGAGCATTCTTCTTTACACAAGGGCACATTTTGGGTTCCATTTCTGTCAGAGCAAAATATTTGGGCATTCAGTCAAACTGGTTGGTCAAATTAGTTTGGATTTGTCTGTGCATCGAAATAGAACAAGGattctatttaaaaattgtCTCTTCTCAGACAATATGGAAGCCAATTCTCTCCTAAAGCACACCTCCCATTCAGAGATATCCCTAGGATGAAAACAAGTGAAGTGCCTCTTCAATAACATATTACTTCTAACATTTTAAATCTTATAAACCAACATCTGTGTCTCTTCcgggcttgacactaacttttctttttcactaatgttatgttcaatttagaccatttgtttcatttgtttgcaaggaccacaatggaaactactggttcaccagtaattgtgaaatcctataaaaagacttttttttttttttttcttttca

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13691 all species →	Lactamase_B_4	tRNase Z endonuclease	Domain	Interproscan
PF12706 all species →	Lactamase_B_2	Beta-lactamase superfamily domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027794 all species →	Domain	tRNase Z endonuclease	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR013471 all species →	Family	Ribonuclease Z/BN	Interproscan
IPR047151 all species →	Family	Zinc phosphodiesterase ELAC protein 2-like	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12553 all species →	ZINC PHOSPHODIESTERASE ELAC PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0016891 all species →	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0042781 all species →	Molecular Function	3'-tRNA processing endoribonuclease activity	Interproscan
GO:0072684 all species →	Biological Process	obsolete mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00784	rnz; ribonuclease Z	EC:3.1.26.11	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.