Gene detail

Detailed information of PFX29028.1 in Stylophora pistillata

Genomic Location: Spis.scaffold72:298857...311197
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis6203_mrna

CCAAGATGGCTTCCCTGTTCGGACCGAACCCTTTCTCAACACCAGTAGGACAAAGAATAGATAAAGCCACAGATGGGAATTTGCCATCCGAAGACTGGGCAGCGAATATTGATATATGTGACATAATCAATGAGACCGAGGAAGGTCCTAAAGATGCTGCTAAAGCCATCCGGAAGAGACTGGCTGGAAATAAAAACTTTAAGAGTGTTCTCTTGACTTTGACGGTCCTTGAGACTTGTGTTAAAAATTGTGGTCACAGATTCCATGTGCTTATCGCTAAAAAGGATTTCCTTGATGAACTTGTAAAAATTTTAGGTTCAAAGAATAATCCACCGCAGATTGTCCAGGATAAGATACTCTCTCTTATCCAAGACTGGGCCGATGCCTTCCGTGGGTCTCCTGAACTGACTAATGTGTTGGAGACTTATGAATCTCTCAGAGCACAAGGTTTGGAGTTCCCTGCCAAAAATCTAGACACCTTGTCCCCTATCTATACACCACAAAGGACTCAACCAGAACGACCAGCCCCAGCACCATCAAGGCCACCTCCCATTCAGCCTCCTGTGCCACTGCCCTTCCAATCTGTGCCTCCAATGCAAGCACCTAGTGGTCCTGTGGTTCCCACACCTGAGCAGCTTGGAAAAATACGCTCAGAACTTGACATTGTGAATGGAAATATTAATGTCATGTCAGAAATGTTAACAGAAATGACACCTGGACAGGAAGAAGCAGGAGATTTGCAGCTCTTGCAGGAATTGAACAGAACTTGTCGTTCCATGCAGCAGCGAGTTCTCGAGCTGATTGAGAGGGTAGCAAATGAAGAAGTAGTTGGTATGCTTTTGAGTGTCAATGATGATCTCAACAATGTGTTTATTCGATACGACCGATATGAGAGGTTCCGACAAGCAGTTCAGCAGCAGAGTCAGCCATCAGAAGCTCCTCCCGCACCCCCACGACCTGCTCCAGTGGAGCCTCTACCTGTTCAGACTGGCAGGGCAACAACAGCCTGGCCAGAAAATTCACACAGATTGCCGGGTACAATTGAACCATCTCAACCACAACTTCCTGTGGCGATACCAGCTCCAGCAGCAGCGGCACTGGTGGCACCAGTAGCACCAGCGGCACCAGCTTCAGCAGCGCCAGCACCAGCCGGGGGTGACTCGCTGATTAGTTTTGATGATGACACACCAACTCCTTCCCAGGCTGCCTCAGTCAATAGCGTGACCTCTCAAGTGCAAGCCATGAATATGGGAACCACCTCTGCTGACCAGGATGATGAAGAATTTGACATGTTTGCTCAATCAAGGAAAACTACTTTTGACGAAAGCAGGAAAGGcGGATCTTCGTACACGGATAACCTGCAGCCTTTTGATCGCTCGATTGGTAATACCATATCTATTCAAAAGACAGACTCAGAAGACACCCAAGCAGCCAAGACCGAGGAACGAAGTGCAATGGATGATATTGAGTCGTGGCTTGATATAACAGAGAAAGATGTGGCTGAAGCCGCTGCTGGTCAACCAAATGGTGACACCTTAAGTAGTTCAGAGTTCGACCAGTTTCTTGCAGACCGAGCCGCTGCAGGTGGTATGCGGAGTGGTAGCGTCAAGGGAGGCAATAATCGCCCCAGACAGAGACAAATGCAAATGGAAAACCAGGCAGATGATGAAATGTTCGGCTTATGAGTCAGTTATGAAGATACTTTATTCTTTCAGGTTACTACCTTGGTTTTGGAACGTTCTcctactgtaaaaaaaaaaaaacctctgcaTTCAAATCATGGATGTCTGTTTTGTGACAAGAGTTTTAGTTGTTGACATTTTTGTAATTGATTTACTGTAATGGTACGCAACGTTTCATTTAATGAAAGATTGCGTTAAAACACTACAAAGGACTGCGAAATACGACTTAAAAGAAACATGGTCGAAATGAAATGGACGTCAGTGGGAAGCATGCAGAATGAAGGACACGGGAAGTAAGATTATAAATTTGGCGAATCCGATAGATTAAAGTTCACAcggcaaccaggtggacaatcagacatgggTTGATGCTAATCTCTAAgcaagatttaatgaatgtaaccagGTCTATGAATTATAATTTCCCTGGCTACgttcattaaatatttaaaccaAAGTAGCATCAAACCGAGTCTGGTGAATACGACTTGGGATGTCTTCCAGTTTCAGGTGGACAGATTTGGCCACGTGACCCATTTAGACCAATCACGCgtcagcaaaaatatttttgatggtttttttttaagtataatgATACTGTAACAAGAAGGGAGGTGAAAACCAGTTTTGGGAATACAAGAGATGATACGAGCACCGGGAGGCCAAAACTGCACTAATCGTCAAGTTCATTAAATATCAGATCAAAAGTGAAAACATGGCCTTAATTAGAATAGTTTTCAAGTTATATTCATTGCAGCCTATTTAAAGAAAGTAGAGATCGTGAGGTATGATTcttttctttcacaatttttgtttggtttcgtctCGTCTCGCGATAGCGTTGCCTTACGCGTCACGCGACTCGCGAGGAGGGGACGCGTTATATTTCGTGACTAAACAACGcttgtgaaagaaaattcagagATCGTCGGTCACATTGTAGTAATGATCGTTCAGTGTTCAGTTTCAGTCCCTTTAAGAATTGTGAGTACTGTACGATAAGATTATAGACACAAACACTAAGATTCTAACTGATAGAACTTTTATTTTAGAACGTGTTATCAAATCAGAAAGAATTGGACTATATTAGAGTAATATTTAGGGCGTGAAGCGCAtgataaattgtaatgaaaatgTGCACGAGACAGCTTGTATGAGAATACGAAAGTAAAAAAACATGTCCTTCTTGAGACGCAGTTCATCGCTGGAAAGCCCATGATAGGACATGCACTGCACACTGGTACACAAGCTTCGGAACTAGATAAGCTTGCAGAGGAATAGTTGtggcttttttctttatttctccctctctcgttttcttttctttctttcctttttgcgCTTTTGAGGCGAGTAGAGTAAAGCACGAGGCGCACGCAAGGCAAGCGTTAGAGGTGATTCACGCACGGAAGGAGGAGcacaaccataaaaaaaaaaaaaaaactgtgtagATGCAAATTTTCGCCTGTCGTGTAGCTAAAGGCCAGAAATGTCAAATTACgtagaaaaatgtattttatgaTCTTCATTTAGTAGATCCCTATAATTACAACTCCTCTGTGAATAGCTACCAGCGCCATGAAGGTCTTTCTGACAGGAAAGCGAGTGCCCGGAAGCTAGAAAGGAAGGAACCATTTTACAATACTTCGAGTCTTTTTAGTTTCATAACAGTTCAGTCCCAGGTCTCCACCGTCTATGCCAAATAGAGGAGTTCCAGACAGGTGTCGCGAGGTTGTTTACTCCCTGACAATTTTCCTCAAAGaggct

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Alpha-Helix\|GAT · all ubiquitin genes in this species
Ubiquitin family	UBD\|Alpha-Helix\|VHS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03127 all species →	GAT	GAT domain	Domain	Interproscan
PF00790 all species →	VHS	VHS domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002014 all species →	Domain	VHS domain	Interproscan
IPR004152 all species →	Domain	GAT domain	Interproscan
IPR038425 all species →	Homologous_superfamily	GAT domain superfamily	Interproscan
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR014645 all species →	Family	Target of Myb protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13856 all species →	VHS DOMAIN CONTAINING PROTEIN FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26401	TOM1, TOM1L1_2; target of Myb membrane trafficking protein 1 and related proteins	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.