Gene detail

Detailed information of PFX29046.1 in Stylophora pistillata

Genomic Location: Spis.scaffold72:175725...178221
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis6190_mrna

TTGTGTTCTAACATAAACTTCACTGCTGAACTGATGTCGTGTTTTGATGCTCTAAGTTTAAACCTTATTCCGTCTGGAGGCTGGGGAAACAGCTAAGGACATGAGAGAAGCTCATGATATTCAAACGGAGCAATTCGTCTGAAAGGCTCTCATTCCGGAGCAAGCacctttttgttttcgttttggcaTCGTCAGCATTTTTAACATATATTCTTTACAGGAACGCTCACTGGAATAGCCACACAGTAAAGTTCACTCCCTTGGATGGCTTGAAAAATAGGAACAACCACTCGATCTCAACGCGTGAGAGGTCAGGGGCAACGAAACGACCACTTCGACAATCGAATCATTTCGAACACGTGGTATTAGGAGTGTCGTcggatttcaaaacaaaattaaatccGACCAGTACTTCAGATGAATTGAGAAAAATTCCATCTAAGCTCTTGCAAGAAAGAATCAAGCATCGAACTCCGGAAGACTCTGGATCCCGCGGTCAGCTTAACTCTCGCAACAAGTACTCTAGCAACGTAAACGGTGTTGACAAGAGCTTGAATTATTCCTCAACTCAGGGCGATCGGAAACATTTGTTGAATTTTAGGAGTCAAAGTGAAGATAAAGAAGATAGCGGCGTTTCTGAGTTTCAGCTTGAAGATGGAGAATTTAAGAAACGACTGCCGAATGCTATCATAATAGGGGTGAAGAAGGGAGGAACACGCGCGCTGCTTGAAATCTTAAAGATTCATCCGAGTATCAGAGCATGTAGCAATGAGGTGCATTTCTTTGATCGCGATGAAAATTACGAACAAGGACTCAACTGGTATCGAGAACAAATGCCCGAGTCAGTGCTCGGGCAAGTTACAATTGAAAAATCTCCAAGTTACTTTATAACTTCGAAGGTACCTGAGAGAGTGTATCGAATGTCTAAAACTGTTAAACTCATTGTGATTGTTCGCGACCCCACAACACGAGCGATATCGGATTATACCCAGGGTGTAGAGCGAAAACCCGATAACCCACGCTTTGAAGAAGTGGTTTTTAACGACGCAGGCGAGGTGGACGAAAATTGGAGCAAAATCTCCATTGGCCGTTATGCCGAGCACTTAGCGAAGTGGATGGAATATTTCCCCTTGAAGCAACTGCATTTTGTTAGCGGAGAGGAACTTGTCAAAAGACCCGCGAAAGAATTGAAACTCGTCGAACGATTTCTCGATATAAAACCCTTCATCAGGGAGGATAATTTTTACTTCAACGAAAGTAAAGGATTTCCATGTTTTGTCGGTAAAATTTCAAACACTGGGACCGTGAACAAAGCGCATTGCATGGGCGAATCGAAAGGAAGAAAACATCCCGCTGTAAAAGAAGACGTTTTGCAAAAGTTGCGGGAATATTTTGATCCATTTAATAAAAAGTTGTATTCAATGGTGCATCGAAACTTTCGCTGGTAAGCGACTACAACAGAGAATTTCAAAATCTGCATAGGCCTATTGATGTTGAATATTGTTTGCTTTGCGACTGATTCAATCATTCCATCTACACCAAACACAAACATTTTAGATGGATTAGACACGAGAATCCATACTTTAAATTATGAGACTAAACAATTAATCATCGCACGGAGTTAcgacagaaacaaaacaattttccatTCGAAAACTACGTACGCGTGCTGTTCTTAATCGAACTTGGCTAGCTGgcgtatttatttattcatctaatTAATATTTATTCTCTCGGGAGGTCTACGATGAAGCCTAATTGTGGGCTACAGTCgtcaaaatattttgcaaatatGACATTCAAGTAAGTGGGCAGATGTCtaggaaagatttccgtataaccccgTACCATTCAGaaacaaagccgtaatcccaaaggtaatctgttgttttgcctcagCTTTCTtgtatccaagaattgtatgcataatgaagtttgggtttatacggaaatcttgccaaataCTTTTGGTTTAGTCCTATTTTGAAGTTTATCTTTAACCGGAAGTTGTGTAAAATTGTTTAAGATAGCACTGTCCTCGCTGGACATAAGACATCACATctgttgtttgaaataattcaaaactgttgtcattatttcttttaagtcCAACTGAATTTTTCCAAGGATAAAGCAGTTACAGGCTCTGAGATATACCCACAGATTGCCCAATTCTAAGacatttgattaaatttaatGGTAAATTTGTAGCACATATTACTAAATCTACACAGGGGAGTAAAGTCCCTTGTTGTCATTGATCCTCTCGCAAACAATTTTACTTTTAGAATTTAGCATATCCACTCAGGTACAATTATCAGCTATGTGCCTTGCAATTTAGCAGCGGAATTTCAACAGTtaagaaatcagaaaaatgtTTACTATGCTGGGCCTTGTCCTTCTTCCAAAGAAGTGGCCAGTATCAGAGATAACAGATATTGTACATCGACAAATATatttgacaaaatttaaatatggtgtgtattatttttttttt

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001250 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00685 all species →	Sulfotransfer_1	Sulfotransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000863 all species →	Domain	Sulfotransferase domain	Interproscan
IPR037359 all species →	Family	Heparan sulfate sulfotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10605 all species →	HEPARAN SULFATE SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0008467 all species →	Molecular Function	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07809	HS3ST3; [heparan sulfate]-glucosamine 3-sulfotransferase 3	EC:2.8.2.30	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.