Gene detail

Detailed information of PFX29116.1 in Stylophora pistillata

Genomic Location: Spis.scaffold71:297373...305390
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis6153_mrna

atggcggatgatCGTGAACCTCCTGCGCTTTTCGACGATGAAGCTGAAACACCAGAGACCAACCCGGACGAACAAGTTAACGGTAATCCCCTAATCGGAGAGACCACAGAAATTTCTCTGAATGACGAGGAAGCCAAGGCAGATACTACTCCTGAAGAGAATGACAAGGGTTCCTCCGATCTTGCTGCAGACGGGAACGAGGAAAAGTCCGAAATTTCTGCGGCGGCCTCCGTGGATGTCACCAACCTCTCTAAACCGAGCGAAGATGACAGCGAACCAGCTCCTAAAGAAAAACCTGAGgaaaaggaaattgaagaagaagaggaagatgaTACCTTTGACATGAATATTAAAGTGACAGATCCTGAAAAGATTGGTGATGGCATGGGCTCTTACATGGTTTTTAAAGTGACAACAGTGACAAGCATGCCAACATTCAAGAATTCGGAGACATCTGTGAAGCGGCGATTTAGTGATTTCCTAGGACTACATGATCGACTCAATAGCAAATTTCTTCATCTTGGAAAGATAGTGCCTCCAGCTCCTGAGAAGTCTGTGGTTGgcATGACCAGGGTCAAGCTGGGAAAAGGAGAGGAAAGTACTCCAGTTGACTTTATTTCCAAGAGGAGAGCTGCTCTAGAGAGATATCTTAACAGAGTTGCACGACATCCAACCTTGCGTGAAGATCCAGATTTCCGACAATTTTTAGAAGCTGATGGGTTACCCCGAGCCAAAGACACAGCAGCACTCAGTGGAGGTGGTCTGAAGCGATTTGTGAAGTCAGTTGGAGATACCATGTTTCAACTTACCACTAAGATGTCTGAATCAGACCAGTGGTTTGAGGAGAAGCAGCAACAGATTGAAACTCTTGACCAGcaattaaagaaacttcatCTGAGTATGGAAACACTAGCAATGCAGCGAAAAGAATTGAGCTCTTGCACTGCAGGTTTTGCCAAGTCTACTGCTATGCTTAGTAACGCAGAGGAACATGCTACATTATCACGGGCACTTTCACAGCTAGCTGAAGTTGAAGAGAAGATTGAGCAGCTCCACGTACAACAGGCGGACAGTGATTTTTATGTTTTGGCTGAACTGCTGAAAGATTATATTGGTCTGATTCAAGCAGTCAAGGCAAGCTTTCAAGAGCGTGTCCGATCTTACAGTAACTGGCAACATGCACAGCAGATGTTGACAAAGAAACGAGAAGCTTTGGTAAAGCTGGAACTtgcatcaaaaaatgaaaagctcCCTCAAGCACAGGAGGAAGTGAAAGAGTGGGAACATAAAGTGGAGAAAGGGGAGGAAGATTTTGGCAAGATTTCTAAGGCGATTCAGAAGGAGATGGCCCGATTTGAGAAAAACCGAGTGAAGGACTTCCGGGAATCTCTGATCAAATACTTGGAAGACATGATGGAAAGCCAACAACAGTTGATCAAGTACTGGGAAGCTTTCTTACCGGAAGCTAAGGCCATTGCATAGACGCCTTtcaaaaatatcataatttttcaattacaGTTTAACCTGAGAACATATGAGTATTTTCTTCAAGAACTTAATTCTTGAattgctttttttcaaaacatgacAGCGACGTTGTTGACTTATCATCAGTGTTTATCCGTCATTTCATAGAGATATCGTGACCGTACTTGCACCTTTGGTTATTCCACAGTCCGTAGAAATcggaaagaaatttaaatctgTCGGAAATGATTTAAcgtaaaaaaatcaattttgctCAAGGGGAGGGAGCGATAACCAGATGAtgtttgtagtatttttcgtACTCAAAATATCACTAGAATTAAAGTGTTGACTACAATGCAATCATGCTTGAAGAAATCGAAATGAACATTATGTGGTTTGTTCACTTAAAATGACCAGCTCTAAGAATCTTCATAGGAATAGTTTGGAAATTAAATTTCGTCAGCAGTGTTTGGGTTCCTTCATTTTTAGTAAAATCAATGAACGCacctaaagaaacaaaaaaaatagcttttttgTAGGTAAAGAATGTTGATGTCTCAAGTTATagacactgaaataaagttaaatcGTAAGATGTTTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09325 all species →	Vps5	Vps5 C terminal like	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR015404 all species →	Domain	Sorting nexin/Vps5-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10555 all species →	SORTING NEXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan
GO:0034498 all species →	Biological Process	early endosome to Golgi transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17917	SNX1_2; sorting nexin-1/2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.