Gene detail

Detailed information of PFX29117.1 in Stylophora pistillata

Genomic Location: Spis.scaffold71:273999...283911
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis6150_mrna

CATTTTTTCTCCCGCTTCGTCTTAATACCTTCCTtttattatttacctttttaacatttttatgatTGAATTACGACTGTGTTTGCCATGCAGCCTCAGTGATTTTAGCCAGCTGTATGGAGAAGGACCTGTTTTCGGCCATCGCATCAGAAAATTATAGTCGTGCTAAGGAACTTGGTTTGAGTGGAGCTAGAGCAGATCAGTTAGAAGATGGCATTACTGCTCTCCATCTGCTGGCTGGGCAAGAGGATCAGGAAGCTTCAGAAGTTTTGGAAGTTTGTTTGAGGTCTGCAGATCCCAATGTCAGATCTAATGAGGGAATGTCACCAGTTCATGTTGCTGCTCTCTGGGGAAGGCTgaacaatttaaaattactgaTAAACCATGGAGGTGATCTCAATCAAACAGATGATGAAGGACAAAATGTTCTGGATTTTGCCTCCCTGTCAGAAGGGACAAGTGCAAAACAGTGTATCGAATTTATATTGGAAGTTGAGTCAAACACAACCTTGGATGAATCAAGAACATGTAATCCTGTAAAAAAATGGGATGGAATGGAACACAAACAGCCAGTTGGTGAAGTCAGTTGTGGATTCAGTGAGTCATTTTACACAGCAATTGCAGAAGACAGTTTGCTTGACCAGACAGTAATTACATTTCCAAACTTGCATCCTTGGCTTGCTGCTGGTGTTTCTTCAGGTGAATTGGATGAAACTGTGGTTGATAAGATTACAGAACTAAATATCTCCAGTAACAGTCTTGAAGATCATGATGAAACTGTAGAAGAAGGTGCAGTGCAGTGGCTGGAACATACGAATTATCAAGGGAATGATTTAGATGACGAAGATCCTGCAGAGTTTGATTTTGGCAATAGCACCCTATTTTATGACTGGAAGGAGTGCAGCACAATATTGGACCAGTCTCTTATCAATAAATCCATTTGTGTGCCTGAGAGTCTTAACAGAATTTCCAACGGTGATCTTAGGAAAGAACTTGAGAGATATGGAGAAATACCTGGTCCAATCATGCAAAGCACCAGAAATGTCTATATAAAGCGGTTAGCTCGACTACAGAGTGGTTCAACAGATTCAAAGGAATCAATATATAGGGAATATTTACCAGAGCTAAGAAGACAATTGGAAGGGAGAGCGGAGATACTGGATTTGTTTGAAGAGGAAGAATCTATGTGTGTGGAATTCAGCTGTAAAAAGAATTGGAGGGAGGGCACTGAGAAGTCTTCCTTTAACTATCTACTCATTGATCCGCGCGTCACACAAAATCTACCAACGAGATCCAAAAAGATGAGTCCGGAGGATGTCTTCAGAGTGTTTATCTTGGCCATATTCTACGTGGGAAAAGGAAAGCGATCTAGACCTTATGCACATCTTAATGAAGCCATGAACTTTGCAAAGCAAAATCCCAAAATTCAGCAAATCCGTGATATTTGGGCCGCTGGGCTCGGTGTTGTGTCGCTTCATATCTTTCAAAGTGTCATTCCAGTGGAGGCATACACGAGGGAGGCGTGCATGATAGATGCACTTGgcCTTCCCCGATTAACAAACAAGAAAAGGGGAGATTATTACGGAAGGGCAGCGTGTTGGCctccaaagaaaaagagagaaatggGGGTATTTCTTCTTCAAAGGGCCCTCAAAATATTACTTAGTGAAGGAGAGAGACAACTGCGCCCTGAAGATTTCAGAATAAAGCATAACTCTTAGATCAGCCCTCCATGGCCAGCATTTCACAACTTTTTCACGTTTCCTCGCAAATACTATTTGTCTTTACTCCCTTTCATAGGCGTaacttttatcaaattttgtttgtcgTCAACCTAATTTTTAACCTATTAACGCGTACTTATTCTGGTGTTTCAAACCGGATGTCATTCAGCTATTTTTAACTGAGTTGTACTCCTTCGTTTTCCAAACGTGTTGAGCCAGCTTTCGAAACAAATTTCTGACGGtttctagttttgtaattttgctttatttgtcTTTACACTTTTTTAAGTTCATACAGTCATTCCCCTTTTTTTCGGTGTTCATCACCAACCTTGTAAATAGCACCATTGTCGAAAGAAATCTGTTTCCTTTGCTGTCACTTTTAGCGTTTTGTAggttaatatattttttcactcTGCCTGAAAGGcgattttattttcaaatttaagcaAGGAAAAGAATCATACGCATAAGTTatgaaaaattactttaaagTGAATCTTTAAGTAAACCATGTCCGCAGATGAGAAATCGTGGAAAATTCAGTACTTTGCGCAAGCGTAGTAACTCGTTTCGCTCATTCTTTTCATTAGTCGAGATTTTGTGAAGCGCGGCTTTCATCAGGGACCATTAAAAATTCAGCAAAGAAAAACTGCTGATATATTTGAGCGCTTCAAGCAAGAAATTAGATAGTAAGAAGCAGGAGCCAAAAATATTagttttatgcttttttttaattcgatccttttttagtcattttacttgatatttaCAGTGAAAATTGTAGTTATTTTAGAATGGTTTTCCTATCTCACCCAATAGAGAGTTATTACATGTAGGATAACTAAGTTTCTCAAAGAAAATGACTagttgtaaattaaaatagaGTGGAAAAAAAGACTTGTAAAGTTTTACAGATAGAAGCttatattttttcagattttagcCAATGTAGTTTTAACTTTAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF03020 all species →	LEM	LEM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR003887 all species →	Domain	LEM domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR034998 all species →	Family	Ankyrin repeat and LEM domain-containing protein 1	Interproscan
IPR011015 all species →	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46427 all species →	ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0004520 all species →	Molecular Function	DNA endonuclease activity	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21411	ANKLE1, LEM3; ankyrin repeat and LEM domain-containing protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.