Gene detail

Detailed information of PFX29197.1 in Stylophora pistillata

Genomic Location: Spis.scaffold69:523986...533664
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis6040_mrna

CAGAAGGAAGCTGCTTCGTACCACTTGTTTTCATCGACGACCTTGCTTTCTAGCTTTGGTTTTCGCAGCCCGCGCTCGCAGAGATTGCCAGCAAGGCTTTTCTGCATAGATTTCTATGCTAAACTTTTTCTCTCTCGCTCTGGAACGGTGAAAATGGCCAGTTCCCCTTCCTCCGGTGGTGTAACCACAATTCCAACAGCCTCCACGAAGAAGATGCGTGTTCGAAGCAAGTCAACCTCAGCTGTTGAAGACGTGAAAGAGGCTCCACAGAACAATGGAACACGAGTGGTGATTGATTCTACTAAAGCATTCGTAAAGAATGGTTTTAGCCATACACTAAGTGGCGGAGAAGCAACGTTGTTCGTGAAAGCCCCCAAGGATAAACACCATGATAGAAAATCCCGGAGCGGTCGCAGAGGTCTACCAAAGAAAGGTGGAGCAGGAGGAAAGGGTACTTGGGGAGCCATTGGGGAAGTGTTGACAGATGAAGATCTGAAGATCAGAGACCATCATGATCCAAATTATGAATCGGAGGAAGATGAGGATGAGCCTTTTGATATCAAGGAGTGCAAACCAGAGCTTACTGAGGAAGAGTTTAGCAGAAACATCACACCGATTGTGAAGGAATATTTTGAGCATGGAGACACAGAGGATGTCTTGCTCTCCCTGGAGGAACTTAACATATCCTCAAGGAAGTACAAGgTTCCTGCCTTTGCTGTCAGTCTTGCACTGGAGAAAAAGGCAACTCAGAGGGAGATGGCATCTGTTCTCATCTCAGACTTGTATGGCAAACACCTCAGCCAAAATGACATAGCACAAGGGTTCCAGCAGCTGTTAGATGACCTTGATGATTTATGTTTGGACACCCCTGATGCTCCTGAGATGGTGGGAAAGTTCATAGCTCGTGCTATTGCTGATGACTGTTTGCCACCAGCTTTTGTTAGTAATTTGGGAGATGCTCCTCCTAATTCTAATCAAGCCAAAGCCTTGACTGAAGCAGGTGTGCTGCTGAAAATGAAACATGGAATGGTGAGATTGGATAGTGTGTGGGGTGTGGCTGGAGGAAGACGCCCAGTCAAGTACCTTGTGAAAAAGATGGTCTTGTTGCTAAAAGAGTATTTGTCTTCAGAAGATATTGAAGAGGCAAGCCGTTGTGTCCAGGAGTTGGAAGTGCCGCATTTCTATCATGAGCTGGTTTACGAGGCAATCATCATGACATTGGAAGACGAGCATGATCGAGTGATGACACTTATGAAGAATTTACTGCAGTTCTTCTCGAACACCAACATCGTCAAACCGGACCAAATAAAGAATGGATTTCAACGTGTGTTTGACTCTTTCTCCGACATTCAACTGGATATTCCACATGCTCATACACTCCTGGAAAAGTTCACTGACATGTGTGCCCGCGATGGAATTATTCCAATATCCTTTACGATGAAAGTCCCTTCCAGGGGACGAAAGCGCTTTGTCAGCGAGGGTGACGGGGGACGAGTGAAATCTTAGCTTTCCTCCTCCTAAGAAAGCCCCAACGAGCCAGACAACTAATCAATGAACTCTACTAACAAGGGGAGAACATTCTTGTTTGAAAAGGGGTCTTGTTTGTCACGGTCTCCCTCGAAGCCGTCGTTTTACTTGTTACCCTGTTCCGTGCCCAAAAGACGGTTACGAAAGAGACCATGTTTGTCATTACACTAGTATTCTGGGCTACCTAAGTTTAGTGTTAAGACTAAGCTAAAATTGTTCTAATCGTGCGTGAATGATTCTCAACATGATGTCGTTAACCCTTAGTACTAGTCTAGTGGCGGATTTTCTTtcccatatatatatatatctctcTGTATCCTTGATGGCATCGATGTCGCCTGTGCGCAGACCTTGGAAAGGTAATCGCACacttaattttcaatttggcTAGTGATCCTCAACTGTCCTAAATGCGCTTTTGAGCCATTTTTTCGagggtttttattgttattttgcgCTAATGACAGTAAAACTAACTTGTACATAAAGGGTTCTTCGTTGGTCAAGGTAGTTGAGATGTTGTAAATTATTGGTGGGaatgtattctttgtttttgttgatgcgGGATGCAATCATCACCATAAAGAATTTGAATGAACGACGGGCTGCAGTGGCCTTAAGCCACTTTGAATAATGATGTATTTTAAACAGATGAGTAACTGCAGTGTCTTAATAGCCTaaacgtaagttttttttttccagcaagttttcagtttttttttgtgtcgtTTACTCTTTGTTAGCTTGAGCATTCGACCTTTCTGTAGTATGTTTAGTTCAGTTCACGTTCTAGCAAACAAAATCCTGACATCAAGGATTTAGAGTAACTtacgatttgttttttttccctcgcTTACTTTCGGACTTTCCTGTTAACAGCGAAGCCAACCTATACAGaccatataatttttttttcaaacgctTTGTCTCCCTTCTTCACGTGAAAATTGTACAGACTCTCTCTGGCTTGTTAAActttataaacaaataaaaaatttca

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02847 all species →	MA3	MA3 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003891 all species →	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan
IPR039778 all species →	Family	Programmed cell death protein 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12626 all species →	PROGRAMMED CELL DEATH 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16865	PDCD4; programmed cell death protein 4	-	Proteoglycans in cancer	ko05205	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.