Gene detail

Detailed information of PFX29200.1 in Stylophora pistillata

Genomic Location: Spis.scaffold69:571233...584407
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis6043_mrna

TTGTGATACTTTCATCCTTGAACTGAAAGAAAGATGCCTCTCCCATCCACAGTAATTGGTAGTTTTCCGAAGCCTTCCTATCTGCACATTCCAGACTGGTTCAAAACCTCCCACACTGGGACATTTACCGAAAATTATAATCGATTTCTCGAAACCTCGTCTAAAGCAGAAACAGAAGATCTGATCATGAGAgctacaaaagaaataatagaTATTCAAGCCGAAGCTGGCATTGATGTGATCAGTGATGGCGAGTTACGGCGAGAGTCTTACATCTTGCATTTCTGTCGGGCGCTAAAAGGGTTTGACTTTCacaatttgttttctaaaaacTGTCGCGATGGTGCATGTGTCACGGACGTTCCTCGTATCGTTGGCCAGGTGACGCCGCGAGAAAGTGAAGCGTGGGTATGGAAAGAATGGAAATTTTCTCAAGATTTATCGACTTTGCCCATGAAAATTACCATACCAGGACCCATGACAATAATAAACTCCACCGAGGATCAATATTATTATGATGACAAAGCGCTAGGGAAAATCTTCGCGAAGATAATTAACAGTGAGATCAAGGCTCTTGTTTTCGCTGGATGTAAATATATTCAGGTTGATGAACCAGTGTTGATGAGGTTTCCTGATGAGGCTTTGGAATATGGAATTGATCAGCTTTCAACATGTTTTGATGGAGTCACATCTGACGTAGTCAAAGCTGTTCATTTGTGTTGTGGTTATCCAAGTTACTTGGATCAAGATGACTATAAGAAGGCTGACAAGGATGGATACCTGAGACTGGCTGACAGACTGGATGCTGCAGGCTTTGATGAGATTTCAATTGAGGATGCTCACAGACACAATGATTTATCACTGTTTGAGCATTTTAAAAAGAGCAAGGTTGTTCTAGGTGTTGTAAAGATTGCCAGCAGCAAAGTAGAGAGTGTTGAGGAGATTCGCAGCCGTTTGAAGCAAGTACTGACTGTTTTACCAGCAGAACGTTTGGTCGTTGCTCCAGACTGTGGTTTGGGATTTCTTCCAACTGATCTTGCGAAGCAGAAACTTTTTAATATGGTACAAGCGGCAAAGTCTTTACCTTAAAATTAATCTATTGTTATGTTGCAAGTCACAGAAGACAGAGTTAGATAGATTGTGCGTTTAGTGTTTTAAAGTTCACACGTTCAATTATATAAAATATTTGGCATCTCATTTCCTCTGCCAATCTTTTTAGACACCAAAGCTATTTTTCCAGAGTTCCTGAAAGGGGTGGCAGCAAAATTGGATTGCCCAAACCTAGATATTGTCTAGGAACTAGTGAGCGAAGCCATTTGGCctgaaatttatattttactcCTAATAGGGGTCTAAATCTCACTCTCAATTTCTTTCAGCTTCAAATATGTCTGTCTTTTCTTGATTACTTAAAGTGAGGTTCCTAATAATTCTTTCTGGGTCCTTTTAATGGTATGTGCTGATTATATATAGACTTCTTGGcagattttgaatattttttcgATAGCAGTGCCAAACTGAGGGAACGAAACAAGCAAGTCCGATAGTTTCTTTTAAGGACACATTGGGCCGGTTTGTTAAACAAAGTTTGGCCGTTAACGTTGTTTGACAAAACCGCGTTCTTAACCATCTTGAATCTAGCCGagtcttttatctgaacatatatttttgtaaacagtgtCACAATGGCCGAAAGCTAACAgaggaaggacatttatttaatgaaaacaacgCCACTTATAGAGAATACGTAAGGCCTACGGCTTGCGTAAAACTGCAGTTTGGGTTAGACCATGTGTAAATAACAGGCCTATTGTGTTGTTCCCAAAACCTTTTTGTAGAATTTTGTCATATCAAAAGTAGTTCCTATAAGTCAGTATGTTACTCTACGTTCtgaatgatattttatttaattcgaaattttttaattacttgtTTCTCACCAGACACGATTGTAAGTCGGGGACCaatatttatgttttcattaaattgtATCACAGGATAAATGATGAATATTACGGGTGTCTGCTTATTAGTTGCTGGCactgggaaaagaaaaatatgatattCGAAGGAAGAAATACTTTTTGTCTCCTTTCTCTTCTTAAAAGTTTCCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01717 all species →	Meth_synt_2	Cobalamin-independent synthase, Catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002629 all species →	Domain	Cobalamin-independent methionine synthase MetE, C-terminal/archaeal	Interproscan
IPR038071 all species →	Homologous_superfamily	UROD/MetE-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30519 all species →	5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003871 all species →	Molecular Function	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0009086 all species →	Biological Process	methionine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00549	metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	EC:2.1.1.14	Selenocompound metabolism	ko00450	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.