Gene detail

Detailed information of PFX29216.1 in Stylophora pistillata

Genomic Location: Spis.scaffold69:895728...911992
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

letm1

ATGGCGATGTTGCAGCACTCTTTCAACCTGCAACGGCTTTTGTTTACTTCTTCCCCACATTTTCGACATGTATGTCAGTTGTCAAGTTATGTCGCTTGCCAAAGATTTGATCAAGATTCAAAGCGCACCTTTCCTTGCCATCGACATTGTAATCATGCTGTTCCATTCAGTCAAAGGAGTGTTGTTGGTCTCAAAAGTGCAGTTCACAATCAATCCATATCTGGACTGTCAGGTCTACATGTTCAATTCAAGACTTTAAAGCTTATAGCAAAGGAAGGACAGATACAGAGTAATTGTTACTCTGGTGGACGTCATCTACATGCCTGGATAAATCCTTGTGCAAATCAGGCAAATTTCTTTCCAATGAAAAACATAATTAACAGAACAATGATTTCTGGAAACACTTTAGATTATAAACATGCAGAAGGTCTCTCGTGTGGTCATCAAAGACGGACTCTCTATACCAGCAGTGTAAATTATGATCCATCTCCCAGCAAAGCGGGCATAACAAAACTGTTGGAAGATGAAGAGAAGAAGTCTAAAGTAGAAGAGGCTGTGGAAGCCATGAAAGAAAAGAAAGAAAAACTGAAGGAGAAAGCTTTCCAAATGGAATGTAGCCCTGAAGAAATAGAGCCAATTGTCACTGTTTCTCCACCACCAAAAAAGTCTTTATGGCAAAGGGTTAAGCAAGAAGCTGCACATTATTATAGTGGATTTAAGCTTTTGTATTTGGAAGTTAGAATTGCTGCCCGCATGTTATGGCAGGTTATGAATGGAAGGGTGTTGTCAAGACGGGAAAGACGTCAGTTTCTTCGCACAGTGGCAGACATATTCCGCCTGGTTCCATTTTTGGTGTTTGTACTGATTCCTTTCATGGAGTTTATGTTGCCAGTTGCTGTTTACCTTTTTCCAAACATGCTTCCCAGTACATTTGTGGACAAATCCAAGAAGGAAGAAAGCAAGAAGAAACAGCTCAAAGTGAAAATTCAAATGGCTAAGTTTTTACAAGACACTGTCGAGGAAATGGCTGTGGCAGCCAAAGAAAAGAAAACTCAAGAGGTCGTCGCTGACTTTGCAAACTTCTTTGAAAAGATCCGCAGCAAAGGACAACAACCCAGCAATGAAGACATCCTAAGGTTTTCCAAATTGTTTGAGGATCAAATTACATTGGACAACATGAGTCGTGCCCAGCTCAAAGCAATCAACAGGCTGCTGATGTTGCCAACCATTGGAACAAACAATTACTTCAGGTTTCGACTGAGGATGAAGCTAAGAGAGCTCAGAGCTGATGATCTGTTAATTCAAAGAGAAGGCGTAGAAAGCCTCACTGAACAGGAACTGCAATCAGCTTCCCAAGCTCGTGGAATGAGAGCTATTGGTGTTCCTGCGGCAAGGTTAAGGTCTCAACTTAAACAGTGGGTTGAACTACACCTCGATGAACAAATTCCAGCATCTCTTTTGCTGATGTCCAGAGCATTGTATCTCCCAGAAAATATCAGTAAGGTTGACCAGCTCAAGGAGACATTGTCACAACTGCCAGAAAACTTGGTAGAAGAGGCTGAAATCAAAATCTGCGAAGTCTCTGGAGAGAAAGTGGACAACAAAGTGCGGTTGGATGTACTGCAGAATGAGGAAAGAATGATTGCAGAGGAAAATCAGGAACTTCTTAAGGAGGAGGAGGAAAAAAAGAAGAAGATCGAAAGCATTGCTTCTGAGATATTAGAGGACAAGGCGCCAGACATCAAACCGATGCCCGAAGAGGATATTTCTCAAGACGATTGGCTCTCAATCAAAGTCAGTCTTGCTCGGGCCAATGAACGAGATGAATTGGAGAAGATCAAGGAAGACAGAGAAGAATATCAAGAGGAACTCCGTGAGCTGAAGACTGAAGATGAAAAGCGCGTACTTGAAGAATCACTTGGTTCATCACGACTCGGTAGGAAAGTGGACGTGATGATTAAAAAGATTGAAGACCGCTTGAGGCAGGTGGAAGATGAAATAGAACAACCGCTTGATGCTGATGGCGATGGGAAAATTAGTTTACAAGAGATGATCTCCGCTGTACAGAGATTGAAGGACGCTCCAAGTGAAGCCAAATGTAAGAGAATTGCTGAAATGCTCGACGAAGATCATGATGGTGCTCTTGACTTAGAGGACGTGGGCACGGTTGCTGAACTGTTGTCCCTTGAAGATGTGGATCTTACTCCGGATCAAATCAAAGACGTTATCGTTTTACTTGAGAAAGAAAACAAACTGCGAAAAGCTGATGACGAGGAGCAATCAAACAAAATCTCAGAAAGAGCTGAGTAA

Transcript

rna-Spis6066_mrna

CGAGATAACACATGTGAGTATCGCTGAAGGAGTGATCGATGGCTACGAAAGAAATATGGACAGACATGATGAAGAGAATTTTATAGTACTTAGGTTATTTTATTCGTAGATAATTGACCTTGTGATTTTTAGTTGTCAGGAAAGCAAAATGGCGATGTTGCAGCACTCTTTCAACCTGCAACGGCTTTTGTTTACTTCTTCCCCACATTTTCGACATGTATGTCAGTTGTCAAGTTATGTCGCTTGCCAAAGATTTGATCAAGATTCAAAGCGCACCTTTCCTTGCCATCGACATTGTAATCATGCTGTTCCATTCAGTCAAAGGAGTGTTGTTGGTCTCAAAAGTGCAGTTCACAATCAATCCATATCTGGACTGTCAGGTCTACATGTTCAATTCAAGACTTTAAAGCTTATAGCAAAGGAAGGACAGATACAGAGTAATTGTTACTCTGGTGGACGTCATCTACATGCCTGGATAAATCCTTGTGCAAATCAGGCAAATTTCTTTCCaatgaaaaacataattaaCAGAACAATGATTTCTGGAAACACTTTAGATTATAAACATGCAGAAGGTCTCTCGTGTGGTCATCAAAGACGGACTCTCTATACCAGCAGTGTAAATTATGATCCATCTCCCAGCAAAGCGGGCATAACAAAACTGTTGGAAGATGAAGAGAAGAAGTCTAAAGTAGAAGAGGCTGTGGAAGccatgaaagaaaagaaagaaaaactgaaggagAAAGCTTTCCAAATGGAATGTAGCCCTGAAGAAATAGAGCCAATTGTCACTGTTTCTCCACCACCAAAAAAGTCTTTATGGCAAAGGGTTAAGCAAGAAGCTGCACATTATTATAGTGGATTTAAGCTTTTGTATTTGGAAGTTAGAATTGCTGCCCGCATGTTATGGCAGGTTATGAATGGAAGGGTGTTGTCAAGACGGGAAAGACGTCAGTTTCTTCGCACAGTGGCAGACATATTCCGCCTGGTTCCATTTTTGGTGTTTGTACTGATTCCTTTCATGGAGTTTATGTTGCCAGTTGCTGTTTACCTTTTTCCAAACATGCTTCCCAGTACATTTGTGGACAAATCCAAGAAGGAAGAAAGCAAGAAGAAACAGCTCAAAGTGAAAATTCAAATGGCTAAGTTTTTACAAGACACTGTCGAGGAAATGGCTGTGGCagccaaagaaaagaaaactcaagaGGTCGTCGCTGACTTTGCAAACTTCTTTGAAAAGATCCGCAGCAAAGGACAACAACCCAGCAATGAAGACATCCTAAGGTTTTCCAAATTGTTTGAGGATCAAATTACATTGGACAACATGAGTCGTGCCCAGCTCAAAGCAATCAACAGGCTGCTGATGTTGCCAACCATTGGAACAAACAATTACTTCAGGTTTCGACTGAGGATGAAGCTAAGAGAGCTCAGAGCTGATGATCTGTTAATTCAAAGAGAAGGCGTAGAAAGCCTCACTGAACAGGAACTGCAATCAGCTTCCCAAGCTCGTGGAATGAGAGCTATTGGTGTTCCTGCGGCAAGGTTAAGGTCTCAACTTAAACAGTGGGTTGAACTACACCTCGATGAACAAATTCCAGCATCTCTTTTGCTGATGTCCAGAGCATTGTATCTCCCAGAAAATATCAGTAAGGTTGACCAGCTCAAGGAGACATTGTCACAACTGCCAGAAAACTTGGTAGAAGAGGCTGAAATCAAAATCTGCGAAGTCTCTGGAGAGAAAGTGGACAACAAAGTGCGGTTGGATGTACTGCAGAATGAGGAAAGAATGATTGCAGAGGAAAATCAGGAACTTCttaaggaggaggaggaaaaaaagaagaagATCGAAAGCATTGCTTCTGAGATATTAGAGGACAAGGCGCCAGACATCAAACCGATGCCCGAAGAGGATATTTCTCAAGACGATTGGCTCTCAATCAAAGTCAGTCTTGCTCGGGCCAATGAACGAGATGAATTGGAGAAGATCAAGGAAGACAGAGAAGAATATCAAGAGGAACTCCGTGAGCTGAAGACTGAAGATGAAAAGCGCGTACTTGAAGAATCACTTGGTTCATCACGACTCGGTAGGAAAGTGGACGTGATGATTAAAAAGATTGAAGACCGCTTGAGGCAGGTGGAAGATGAAATAGAACAACCGCTTGATGCTGATGGcgaTGGGAAAATTAGTTTACAAGAGATGATCTCCGCTGTACAGAGATTGAAGGACGCTCCAAGTGAAGCCAAATGTAAGAGAATTGCTGAAATGCTCGACGAAGATCATGATGGTGCTCTTGACTTAGAGGACGTGGGCACGGTTGCTGAACTGTTGTCCCTTGAAGATGTGGATCTTACTCCGGATCAAATCAAAGACGTTATCGTTTTacttgagaaagaaaacaaactgcgAAAAGCTGATGACGAGGAGCAATCAAACAAAATCTCAGAAAGAGCTGAGTAACACACCTCGTTACTTAAGAAATTCGAAATATCCCTGTAATTCTAAGTTGTTATAACTGTCTTGATTTATAGCATTGTTGAAAGCATGAACGTGAAGGATCATACTCTTTTGTACATTGAAGTATTCATTTTgaacttgttctttttttttttttttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07766 all species →	LETM1_RBD	LETM1-like, RBD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033122 all species →	Domain	LETM1-like, ribosome-binding domain	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR044202 all species →	Family	LETM1/MDM38-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14009 all species →	LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006875 all species →	Biological Process	obsolete intracellular metal ion homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17800	LETM1, MDM38; LETM1 and EF-hand domain-containing protein 1, mitochondrial	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.