Gene detail

Detailed information of PFX29322.1 in Stylophora pistillata

Genomic Location: Spis.scaffold67:235803...268130
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XPOT

ATGGCTGAAAATTTGCTACAGGGTCTACAATCGGCCGCAAATTCCACATCACAAGCTGGGACCCTGCAATATTTTGAACAGCTGAAAAATTCAGAAGATGGATGGAAACTTTGCGGTGATGCTCTCGTTCGAAATCTTTACAGTGATGAAACTGTCAAGTTCTTCTGCTTCCAAGTTCTAGAGCATCAGATTAAAACAAGCCATGCTGCAGCCTCACCACTAAATCAGTGTACAGCAAGAAACATCCTTTTAACTTGGCTCAGAAATCAGTGTTGCAGTAAAACAGATGATAAAAACTTTTTAAAGAATAAGGCTGCTCAAGTGTTCAGTTTGATCTTTGTGCGTGATTATCCTGAAGGGTGGCCAACATTTTTCTCAGACCTTCTCCAGTGCTTGCAGTTTGGTGCCCAAGCAGTAGACATGTACCTGAGAATTTTGAAAGCAATTGATGAGGAAGTAGTTGACAGAGATGTCATAAGAAATCAGCAGGATGCAGAGAGAAACATGAAGATCAAAGATACAATCAGAGACACCTGCATCACAGATCTTGTAGATTCTTGGTATCATATCTTGAATACCTACGAGAACAGTTTATCATCACTGACATGCTTATGCCTGGATGTTATTGGAGCTTATATTGAATGGATTGACATTGGCTTGATAGCAAATGATAGATTTATAAGTGCACTTCTCAGATACATGTCAGTGGAAGTCCTCCGTGAGAGTGCTTGCGATTGTATCCATGAGGTCATCATGAAGGGAATGGAGCCAGTGGCGAAACGGGAACTGGTTGAGTCTCTTGTCAGTGTTTTAGAGAAAAGTGGAATCCTTCAGCTGCAAGAGGATGAAGATGCTGATTTTTTAGCTAAAGTGTCAAAATTGATGAATGCTGTGGGAACACAACTTCTTAACAGCTACAGCAAGCTTACAAAATCTGGTGATACAGAAGCAGCAGCAAAGTGCCTCCATGCCGCTGAGGAGAAGATGCAATACTTGTTTAGATTTCTTAGTCATGATGATGATGATGTGTCTCAGAATGTGTCTGGATTTGGATACGCTTACTTGACCGTCCTGAAGCAGATTGCAAATCCAAATGAACAACAGAAAGCAAACTTGAGGGCAATTTTGCATGTCATTATCAACAAGATGAAGTATGATGAATCATACAACTTTGATCATGAGGGTGAAGATGAAGTGATGTTCATGGAATATAGAAAGGAAATGAAGATCTTATTTGACAATATTGCTCAGCTGGACCCTGATCTGGTGCTGGTGTCAGTTCACAATATTTTGAACTCAACATTTGGGCAATTAGATGGAGCCAAGTTTATGGATGTGGAGATAGCTGTACGAGTTCTTTACATGGTTGGAGAAGCGATGTCGATGCAGCAATTGTACTCGGATGCCTCAAAGTTTTCAGCGCTTCAGCAAATGATGAGTTTGTTCTTTGAGACAGTTGTCAGGTACGACAGATTTTTTAGCAGCCAGGGTCAACACATTCCCACAGTACTGATTGCCTTCCTGGACGAGAGAGGACTCCGCAACCCAAACTGCACAGTCAGGAGCCGATGTTCCTATCTGTTCTCAAGGTTTATTAAATCTCACAAGGCAAACATGCTGAACTATGCACATGACGTTTTAAAAAGACTGCAAGGACTTCTTGTCATATCCGCAGAAAATGGTTACCAGCAGCTTCTATCTGCTGATGATCAGTTGTTCCTTTATGAGAGCGCAGGGATACTGATAGTCGCTAGTGGAGCAGTACCAGAGAAGCAGCTGATGTATATGAAGGACTTACTGTCCCCGATCATCGAAAAGTTTGATTCAATTGTCACCAAGCTCATGTCGGAGACTGACGATGCCTCTTCCTTGGTGTATGCCCAGCAGCTTTATCATCTGGTTGCCTATGCAAGTCGAGCCAGTAAAGCTTTCCCCAATCAGCAAGCCCTGAAAGCCAGTGGTTGTGCACCATGTTTCACAGAGGCTTTGCCGATTTTCCTCAGAGCACTTCACATACCCATCCATCGAGACACCATCCACTCTGGGGTGCGGCAGTACCTGCACAGGATGATTGTATGCCTGGGTGAGGAAGTACTACCCTTCATCCCTGTTGCAGTTTCGCATCTACTGGAAGGTTGCACGGCGCGGGACATTCAAGAATTCATTCCGCTTATCAATCAGATCATCAGCAGATTCAAGACTCAAATTGGGCCTTTCCTGAGGGAAGTTTTTATGGCAATTGTAAACAGAATCTTCATAGTCCTTGGCAAACCAGCGGATGCAAAAGATGCACAGGCAGTCAAGGAGAAGGAAACTCTGAGGCGTAGTTACTTCCTGTTTGTGGGTGCTGTGGTAACCAATGATGTAACAGGGGTCCTCACCTCTCAAACTCCGCAAGATCTACACCAAGTGTTGTTGACCTTGATTCAAGGAGGAGTAGAGTTTCCAGACCCAGTGGCGCAAAAGATTTCTTTCAACATTCTTCGTAAACTGGTTGAACTCTGGGGTGGCAGCAATGGATTGAATGGTTTCAGAGAGTTCATCTACGAAAGTATTGTACCTGCGTCGTTTATGGCTCCTATGAAGTCGAACTTTGACATGAATGACGCACAGACTATTTTGGCTTTGCAGGAAATTGCTCTTACGCAGAAAATGATTCTGCAGAAACAGGGAGTGGAGTTTATAGAATTCCTACAGAGCAAATACCTTCCAACACTACAGATAGCACCAGGACTTATTCAGGAGTATATAAGCGCCTTACAGCACGCAGACATCAAAACCTTTAAGAACTATATAAAGGTGACGTGTAGATGA

Transcript

rna-Spis5902_mrna

ATGGCTGAAAATTTGCTACAGGGTCTACAATCGGCCGCAAATTCCACATCACAAGCTGGGACCCTGCAATATTTTGAACAGCTGAAAAATTCAGAAGATGGATGGAAACTTTGCGGTGATGCTCTCGTTCGAAATCTTTACAGtgatGAAACTGTCAAGTTCTTCTGCTTCCAAGTTCTAGAGCATCAGATTAAAACAAGCCATGCTGCAGCCTCACCACTAAATCAGTGTACAGCAAGAAACATCCTTTTAACTTGGCTCAGAAATCAGTGTTGCAGTAAAACAGAtgataaaaactttttaaagaatAAGGCTGCTCAAGTGTTCAGTTTGATCTTTGTGCGTGATTATCCTGAAGGGtggcCAACATTTTTCTCAGACCTTCTCCAGTGCTTGCAGTTTGGTGCCCAAGCAGTAGACATGTACCTGAGAATTTTGAAAGCAATTGATGAGGAAGTAGTTGACAGAGATGTCATAAGAAATCAGCAGgaTGCAGAGAGAAACATGAAGATCAAAGATACAATCAGAGACACCTGCATCACAGATCTTGTAGATTCTTGGTATCATATCTtgAATACCTACGAGAACAGTTTATCATCACTGACATGCTTATGCCTGGATGTTATTGGAGCTTATATTGAATGGATTGACATTGGCTTGATAGCAAATGATAGATTTATAAGTGCACTTCTCAGATACATGTCAGTGGAAGTCCTCCGTGAGAGTGCTTGCGATTGTATCCATGAGGTCATCATGAAGGGAATGGAGCCAGTGGCGAAACGGGAACTGGTTGAGTCTCTTGTCAGTGTTTTAGAGAAAAGTGGAATCCTTCAGCTGCAAGAGGATGAAGATGCTGATTTTTTAGCTAAAGTGTCAAAATTGATGAATGCTGTGGGAACACAACTTCTTAACAGCTACAGCAAGCTTACAAAATCTGGTGATACAGAAGCAGCAGCAAAGTGCCTCCATGCCGCTGAGGAGAAGATGCAATACTTGTTTAGATTTCTTagtcatgatgatgatgatgtgtCTCAGAATGTGTCTGGATTTGGATACGCTTACTTGACCGTCCTGAAGCAGATTGCAAATCCAAATGAACAACAGAAAGCAAACTTGAGGGCAATTTTGCATGTCATTATCAACAAGATGAAGTATGATGAATCATACAACTTTGATCATGAGGGTGAAGATGAAGTGATGTTCATGGAATATAGAAAGGAAATGAAGATCTTATTTGACAATATTGCTCAGCTGGACCCTGATCTGGTGCTGGTGTCAGTTCACAATATTTTGAACTCAACATTTGGgcaATTAGATGGAGCCAAGTTTATGGATGTGGAGATAGCTGTACGAGTTCTTTACATGGTTGGAGAAGCGATGTCGATGCAGCAATTGTACTCGGATGCCTCAAAGTTTTCAGCGCTTCAGCAAATGATGAGTTTGTTCTTTGAGACAGTTGTCAGGTACGACAGATTTTTTAGCAGCCAGGGTCAACACATTCCCACAGTACTGATTGCCTTCCTGGACGAGAGAGGACTCCGCAACCCAAACTGCACAGTCAGGAGCCGATGTTCCTATCTGTTCTCAAGGTTTATTAAATCTCACAAGGCAAACATGCTGAACTATGCACATGACGTTTTAAAAAGACTGCAAGGACTTCTTGTCATATCCGCAgaaaatggTTACCAGCAGCTTCTATCTGCTGATGATCAGTTGTTCCTTTATGAGAGCGCAGGGATACTGATAGTCGCTAGTGGAGCAGTACCAGAGAAGCAGCTGATGTATATGAAGGACTTACTGTCCCCGATCATCGAAAAGTTTGATTCAATTGTCACCAAGctCATGTCGGAGACTGACGATGCCTCTTCCTTGGTGTATGCCCAGCAGCTTTATCATCTGGTTGCCTATGCAAGTCGAGCCAGTAAAGCTTTCCCCAATCAGCAAGCCCTGAAAGCCAGTGGTTGTGCACCATGTTTCACAGAGGCTTTGCCGATTTTCCTCAGAGCACTTCACATACCCATCCATCGAGACACCATCCACTCTGGGGTGCGGCAGTACCTGCACAGGATGATTGTATGCCTGGGTGAGGAAGTACTACCCTTCATCCCTGTTGCAGTTTCGCATCTACTGGAAGGTTGCACGGCGCGGGACATTCAAGAATTCATTCCGCTTATCAATCAGATCATCAGCAGATTCAAGACTCAAATTGGGCCTTTCCTGAGGGAAGTTTTTATGGCAATTGTAAACAGAATCTTCATAGTCCTTGGCAAACCAGCGGATGCAAAAGATGCACAGGCAGTCAAGGAGAAGGAAACTCTGAGGCGTAGTTACTTCCTGTTTGTGGGTGCTGTGGTAACCAATGATGTAACAGGGGTCCTCACCTCTCAAACTCCGCAAGATCTACACCAAGTGTTGTTGACCTTGATTCAAGGAGGAGTAGAGTTTCCAGACCCAGTGGCGCAAAAGATTTCTTTCAACATTCTTCGTAAACTGGTTGAACTCTGGGGTGGCAGCAATGGATTGAATGGTTTCAGAGAGTTCATCTACGAAAGTATTGTACCTGCGTCGTTTATGGCTCCTATGAAGTCGAACTTTGACATGAATGACGCACAGACTATTTTGGCTTTGCAGGAAATTGCTCTTACGCAGAAAATGATTCTGCAGAAACAGGGAGTGGAGTTTATAGAATTCCTACAGAGCAAATACCTTCCAACACTACAGATAGCACCAGGACTTATTCAGGAGTATATAAGCGCCTTACAGCACGCAGACATCAAAACCTTTAAGAACTATATAAAGGTGACGTGTAGATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19282 all species →	Exportin-T	Exportin-T	Family	Interproscan
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040017 all species →	Family	Exportin-T	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR045546 all species →	Domain	Exportin-T, C-terminal domain	Interproscan
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15952 all species →	EXPORTIN-T/LOS1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006409 all species →	Biological Process	tRNA export from nucleus	Interproscan
GO:0016363 all species →	Cellular Component	nuclear matrix	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0071528 all species →	Biological Process	tRNA re-export from nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14288	XPOT; exportin-T	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.