Gene detail

Detailed information of PFX29352.1 in Stylophora pistillata

Genomic Location: Spis.scaffold67:545723...562579
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ttll3

ATGGATATGTTAGATTACTGCAAGACCTTTAATATGGTAAAAAGTAGTTATGCCAACCAAGAATCTACCGATTTAACTTCTCAGGAAGCTCGGCAACTAGGTGGTTCGCAGAAGAATCACGAGAATAATGATGGCGATATGTTGGTGGAGACTGTCGAGAGTTTGTCAACAAAACCTGGGGATTTATCCATTTATGGGCCAGATACACAGATCGACAAGGACATAGGCAATTCTGGGGAGAAGAAGCTGAGCACTTTGAATGAGGTAGCGAGGAAAAAAGGAATGATCTCCACGCTAAATACGAAGACTCAGCAAAGACTGAATTTTGAATGTGAACTGACTTTTGCCCCAAAACTCAATGCACTGAGTATAAAACTGGCGAAAGAACGCGGCGTAAAGGTCCGTTCTAGCTCTGACAGAAAGACTTATTACGCGGCAGATGAGTTTACTTTTAAACCCAAAGTGAGTTCGAACAGTGTTAAAATCGTACAGCAGCTGAAAACGACATTTATGGACCGGCAGCAAATGCACGTGGAGAAGCAGAAGCGCTATATTGAAGCAACAATCAACAATTCAAACCAAGCCAAAGACAAGTTCACTCCAGTTCCTGATAAAGTTTCCAGCAGGTCTCCAACAAGATTGAAAAAGATTTCAAAAATCAAAGAAGCCAGGTCTGCAGAGGAAGATGATCAGAAGTTGTCAGATGAGAGTTCAATGACATCTCCAGAAGTGCTAGTATCAACGTTGGCACCTGATTTTCTAACAACTCACACCATAAGCACATCCATTGGAACTGATAGAAGAGGTTCACAGGAAAAATCTGACGAGCAATCTGACTTGAACTCTTTGTCTTCGAATGATTTCACAAGGAAAACAAAGTCAACTGGAAAAATTTCAGAGAATGCTGTCAATAGAGCTAATGCTGCATATCAAAAATTCCAAGAAACTAGTCCTTACAATCAGTCCCTTGAAAATTTATCCTTGAAAAGGGGAAAGCGAGTTTTAAAGGCTGCACGCAAAAGGACGATTACCCATCCCCCAGCAAAACTGGTCACCACTGAAAGTAACAACAATAGCCCTGGATGGGATGAGAGTACAAAAGTCAAGATTACTGGAAAACAGAAAACTTCTCACTCCAGGAGTCACTCTCAACCTAACTCACAGCCAGGAAAAAAGAGTTATGATGATCCTATGTTTGACAAAGTTAGAAATGCAACAAAAGTAGCAGAAAATGCCATCAAGAAGAAGAAAGTATTTATTTGCCATGGACCCTACCCAATTGTGCGAGCTGTGCTGCGAAAGCGAGGATACGTAGAGAAACATTACAAAGGAAGTCTTTTACCTACAAAAAACAAGAAAAATGAAAGTGACGGTAGAGATGATGATAATTCTTGTGACAGTGGGGATGAATCTGACAATGAAATGTCACCCAGGAAAGATGCAAAGGCCGCCAGTAATCTTCTAGCTAAATCACATAGGGCATCTAAGACTAAAACAAGGGCTGTCGTCAATGTTAGTAAGAATAGCAACGATGATGACGGTGATGATGGTAGCTGTTGTGATGACAGTGACACTGACAGCACTGACAATGAAGATTGGAATGCAGGGTATGACGGAAATGGTCCAGACTGTGAGTTCAGTCTTATGTCCAGAACTGTGCGAAATGCTGTGGCTTCATTTATATGGACAACCAAACGAGATGATGTAGATTTCAAGTTTTTGAGAAAGGACCAACTTGTGAATCATTACAGCAAAGCTAGCTCATTGACTACAAAGTTTGGTCTCACAACAAACCTGAGGAATTTGAAGTGGTATGAAGAGGCAGATCACTATACTTTCTTCCCTCGTTCACACTTGCTTGGTTCAGATGATGAAAAGATGGACTTCATAGATGATTACCGTTTGACTGCTGCTGTAAGCATTGTTAAGTGGGTTGTTCAAAGGTACGAAAATGGCAACACTGATGATAAGCCTGCGTCCAATGAAGAACCTCTGCCTCCGGATCAGGGGCATGCTACTCCTAAGACCACCTCTGCAGAGCTAAGGAATTCAGCCACATCCAGGGAAACATCCAAAGCAGGATCCCAAGCTACATCTAGAGCATCTTCCCACTCAGTCTCTAATGTGGTACCTGTGAAGGCCTTGACACTTGCACTGGAGGCTTGTCGTGATTTCCTCAAGTGTAAGGAGCATTTGGACATTGATGAGCCTCTTAATAAGGGTCCAGCCATCTCAGAGGATTCCTGGAAACTACTACTTGTCTATTATTATCAAGTCAAGAGTCCTGGTACTGTGATTGCAACTGCTTATCCGTTTCTCAAAGAGTGTCAGAACATTATGAAACAGATGAAGGAATATCTTCCTCAAATTGAAATTGATGGTACAAAGAACATTTGGATTGTCAAACCTGGTGCAAAATCAAGAGGCAGAGGAATTATGTGTATGGATCGTCTTGACCAGATTGTCAAGCTTGTTGGAAGTAATGCTGTGGGCAAGAAAGAGGGTCACTTGGTTGTCCAGAAATATATAGAGAGGCCACTACTGATCCATGGAGTGAAATTTGACATCAGACAGTGGTTTCTTGTTACTGACTGGAATCCTTTGACTTTGTGGTTCTATAAGGATTGCTACATACGATTCTGCAGTCAGAACTTCTCTCTCGAAGACTTTCACATAAGCATACACCTTGCCAACAATTCCATCCAGAAGCACTTTGAGAATGGAGTCCGTGACAAGCGTATACCAGATGAGAATATGTGGAGTAGTGATGACTTGAAGGCTTATCTCACGAAACGTGGTGTTGGTGAAATGTGGGAAGAATCGATTTATCCTGGAATGAAGAAAGCTGTTATTTCTGCTGTGCAGTCCTGTCAGGAGATAGTGGAATATCGGAAGAATTCATTTGAGTTATATGGTGCTGACTTCATTATTGGTGAAGACTACAAGCCATGGTTGTTGGAAATAAATTGCAGTCCTACAATGGGACCAAGTACAGCAGTTACAAGAAAACTGTGTGCACAGGTTCTGGAAGATACCATGAGAGTGGTGCTTGACCGACGCGAGGACAAGAACTGTGATACAGGAAGATATGAATTAGCATTTAAACAGCCACAAGTGTCAGCTCCTCCATACATTGGCATGAACATGGCAGTAGAAGGAGAGGGAATACGCAAACCAACAGCAAATGCAAAGAAGCATAATGAGCTTACAACTCCTAGAGTTATACCAAGCTCCAAGAATAAGGATGCTTCTACAGAAACTAAAGCTGCTGCTGTTTCCCAGCACAAACAGATGTCTCCAGAAGCCAATAATACTAAGATTTCAACTCTATCTCGCCCCAAAGAAGCACGGAATATCATTGCAAATCTTTCAGGGGAAGCTTTAGAGACATTGAACACCAAAAATCGGAGAGAAACAAAAAGGAAACCTGAAGGTTCATGGGCAACTGGTAGCATGTATGTTGCACAGTCCATTCCCATAGCAACAACCTTTTGCTCAACAGATGATGGGAAATTGAAAGGAATCATTAAAAGAAGTAAATCTCGTTATTCAACAAATGTTGTTACGACTGAGATGCAACCAAGAGTTCCAAGGGCAATGCAAATACCAAAAGCAGTACTCAAGTACTCCAATGACAGCAGAATGCGACAGAGAACACAGCTACCCATTTCTATTGGCCCAGACAGCAATGGAAAACATTTCTAA

Transcript

rna-Spis5916_mrna

ATGGATATGTTAGATTACTGCAAGACCTTTAATATGGTAAAAAGTAGTTATGCCAACCAAGAATCTACCGATTTAACTTCTCAGGAAGCTCGGCAACTAGGTGGTTCGCAGAAGAATCACGAGAATAATGATGGCGATATGTTGGTGGAGACTGTCGAGAGTTTGTCAACAAAACCTGGGGATTTATCCATTTATGGGCCAGATACACAGATCGACAAGGACATAGGCAATTCTGGGGAGAAGAAGCTGAGCACTTTGAATGAGGTAGCGAGGAAAAAAGGAATGATCTCCACGCTAAATACGAAGACTCAGCAAAGACTGAATTTTGAATGTGAACTGACTTTTGCCCCAAAACTCAATGCACTGAGTATAAAACTGGCGAAAGAACGCGGCGTAAAGGTCCGTTCTAGCTCTGACAGAAAGACTTATTACGCGGCAGATGAGTTTACTTTTAAACCCAAAGTGAGTTCGAACAGTGTTAAAATCGTACAGCAGCTGAAAACGACATTTATGGACCGGCAGCAAATGCACGTGGAGAAGCAGAAGCGCTATATTGAAGCAACAATCAACAATTCAAACCAAGCCAAAGACAAGTTCACTCCAGTTCCTGATAAAGTTTCCAGCAGGTCTCCAACAAGAttgaaaaagatttcaaaaatcaaagaagcCAGGTCTGCAGAGGAAGATGATCAGAAGTTGTCAGATGAGAGTTCAATGACATCTCCAGAAGTGCTAGTATCAACGTTGGCACCTGATTTTCTAACAACTCACACCATAAGCACATCCATTGGAACTGATAGAAGAGGTTCACAGGAAAAATCTGACGAGCAATCTGACTTGAACTCTTTGTCTTCGAATGATTTCACAAGGAAAACAAAGTCAACTGGAAAAATTTCAGAGAATGCTGTCAATAGAGCTAATGCTGCATATCAAAAATTCCAAGAAACTAGTCCTTACAATCAGTCCCTTGAAAATTTATCCTTGAAAAGGGGAAAGCGAGTTTTAAAGGCTGCACGCAAAAGGACGATTACCCATCCCCCAGCAAAACTGGTCACCACTGAAAGTAACAACAATAGCCCTGGATGGGATGAGAGTACAAAAGTCAAGATTACTGGAAAACAGAAAACTTCTCACTCCAGGAGTCACTCTCAACCTAACTCACAGCCAGGAAAAAAGAGTTATGATGATCCTATGTTTGACAAAGTTAGAAATGCAACAAAAGTAGCAGAAAATGCCATCAAGAAGAAGAAAGTATTTATTTGCCATGGACCCTACCCAATTGTGCGAGCTGTGCTGCGAAAGCGAGGATACGTAGAGAAACATTACAAAGGAAGTCTTTTACctacaaaaaacaagaaaaatgaaagtgaCGGTAGAGATGATGATAATTCTTGTGACAGTGGGGATGAATCTGACAATGAAATGTCACCCAGGAAAGATGCAAAGGCCGCCAGTAATCTTCTAGCTAAATCACATAGGGCATCTAAGACTAAAACAAGGGCTGTCGTCAATGTTAGTAAGAATAGCAACGATGATGACGGTGATGATGGTAGCTGTTGTGATGACAGTGACACTGACAGCACTGACAATGAAGATTGGAATGCAGGGTATGACGGAAATGGTCCAGACTGTGAGTTCAGTCTTATGTCCAGAACTGTGCGAAATGCTGTGGCTTCATTTATATGGACAACCAAACGAGATGATGTAGATTTCAAGTTTTTGAGAAAGgacCAACTTGTGAATCATTACAGCAAAGCTAGCTCATTGACTACAAAGTTTGGTCTCACAACAAACCTGAGGAATTTGAAGTGGTATGAAGAGGCAGATCACTATACTTTCTTCCCTCGTTCACACTTGCTTGGTTCAGATGATGAAAAGATGGACTTCATAGATGATTACCGTTTGACTGCTGCTGTAAGCATTGTTAAgtgggttgttcaaaggtacGAAAATGGCAACACTGATGATAAGCCTGCGTCCAATGAAGAACCTCTGCCTCCGGATCAGGGGCATGCTACTCCTAAGACCACCTCTGCAGAGCTAAGGAATTCAGCCACATCCAGGGAAACATCCAAAGCAGGATCCCAAGCTACATCTAGAGCATCTTCCCACTCAGTCTCTAATGTGGTACCTGTGAAGGCCTTGACACTTGCACTGGAGGCTTGTCGTGATTTCCTCAAGTGTAAGGAGCATTTGGACATTGATGAGCCTCTTAATAAGGGTCCAGCCATCTCAGAGGATTCCTGGAAACTACTACTTGTCTATTATTATCAAGTCAAGAGtccTGGTACTGTGATTGCAACTGCTTATCCGTTTCTCAAAGAGTGTCAGAACATTATGAAACAGATGAAGGAATATCTTCCTCAAATTGAAATTGATGGTACAAAGAACATTTGGATTGTCAAACCTGGTGCAAAATCAAGAGGCAGAGGAATTATGTGTATGGATCGTCTTGACCAGATTGTCAAGCTTGTTGGAAGTAATGCTGTGGGCAAGAAAGAGGGTCACTTGGTTGTCCAGAAATATATAGAGAGGCCACTACTGATCCATGGAGTGAAATTTGACATCAGACAGTGGTTTCTTGTTACTGACTGGAATCCTTTGACTTTGTGGTTCTATAAGGATTGCTACATACGATTCTGCAGTCAGAACTTCTCTCTCGAAGACTTTCACATaaGCATACACCTTGCCAACAATTCCATCCAGAAGCACTTTGAGAATGGAGTCCGTGACAAGCGTATACCAGATGAGAATATGTGGAGTAGTGATGACTTGAAGGCTTATCTCACGAAACGTGGTGTTGGTGAAATGTGGGAAGAATCGATTTATCCTGGAATGAAGAAAGCTGTTATTTCTGCTGTGCAGTCCTGTCAGGAGATAGTGGAATATCGGAAGAATTCATTTGAGTTATATGGTGCTGACTTCATTATTGGTGAAGACTACAAGCCATGGTTGTTGGAAATAAATTGCAGTCCTACAATGGGACCAAGTACAGCAGTTACAAGAAAACTGTGTGCACAGGTTCTGGAAGATACCATGAGAGTGGTGCTTGACCGACGCGAGGACAAGAACTGTGATACAGGAAGATATGAATTAGCATTTAAACAGCCACAAGTGTCAGCTCCTCCATACATTGGCATGAACATGGCAGTAGAAGGAGAGGGAATACGCAAACCaacagcaaatgcaaagaaGCATAATGAGCTTACAACTCCTAGAGTTATACCAAGCTCCAAGAATAAGGATGCTTCTACAGAAACTAAAGCTGCTGCTGTTTCCCAGCACAAACAGATGTCTCCAGAAGCCAATAATACTAAGATTTCAACTCTATCTCGCCCCAAAGAAGCACGGAATATCATTGCAAATCTTTCAGGGGAAGCTTTAGAGACATTGAACACCAAAAATCggagagaaacaaaaaggaaacctGAAGGTTCATGGGCAACTGGTAGCATGTATGTTGCACAGTCCATTCCCATAGCAACAACCTTTTGCTCAACAGATGATGGGAAATTGAAAGGAATCATTAAAAGAAGTAAATCTCGTTATTCAACAAATGTTGTTACGACTGAGATGCAACCAAGAGTTCCAAGGGCAATGCAAATACCAAAAGCAGTACTCAAGTACTCCAATGACAGCAGAATGCGACAGAGAACACAGCTACCCATTTCTATTGGCCCAGACAGCAATGGAAAACATTTCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03133 all species →	TTL	Tubulin-tyrosine ligase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004344 all species →	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan
IPR051437 all species →	Family	Tubulin tyrosine ligase-like monoglycylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45870 all species →	TUBULIN MONOGLYCYLASE TTLL3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036211 all species →	Biological Process	protein modification process	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0018094 all species →	Biological Process	protein polyglycylation	Interproscan
GO:0070736 all species →	Molecular Function	protein-glycine ligase activity, initiating	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16608	TTLL3_8; tubulin monoglycylase TTLL3/8	EC:6.3.2.-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.