Gene detail

Detailed information of PFX29371.1 in Stylophora pistillata

Genomic Location: Spis.scaffold66:169079...186568
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Mta1

ATGGCGAACGCATCAAACGTTTTCCGGGTTGGAGATTATGTTTACGTTGAAACTAACCCGGCGTTACCGTATCAAATACGAAGAATTGAGGAGTTGACCAAGACAAGTAATGGGCAAGTTGAAGCTAAAGTTCAGTGTTTCTACAGAAAGAGAGATTTATCTTCAGCACTTGCAGTACAGGCTGAGAAACATTTGATACAAGCAGAAGAGGATGCAGAAATTGAAATGGGTGATAGTGAAATGGAAGATGTCTTAAGACATCAGCTGATTCACAGAGAGGTCTTTTTGTCCAGACAGTATGAAAATATCAATGCCAACACCATTAGGGGAAAATGCTTGGTCACTCTTTACAATGAAGCTGAGATTCTACCAAAATATTTAGAAAAAGAGGACTGGTTTCATTACTTTCTTGTTTATGATCCCCAACAAAAAACTTTGGTTGCTGACCGAGGAGAAATGGGAATAGGCACAGCTTATCAGGCTCAAGTACCCAAGACAGCTAAGAAAGGACTTCAAGATGACAGAGATCTTTCTAAACTGGAGACTTTGGTTTGGAACCCAAAGAATCCTTTACAAGATCAACACATCGATCAGTTTCTTGTTATAGCAAGATCTGTTGGAACATTCGCCAGAGCTCTTGATTGTAGCAGTTCAGTTAAGCAGCCCAGCTTACATATGAGTGCTGCAGCAGCTTCCCGGGACATTACACTGTCTCATGCCATGTGTGCTCTCCATAATAATGGGTACAATGTCAGCAAGGCAATTGCTAGTCTGGTTCCCTCTGGTGGACCCATTCTTTGTCGCGACGAGATGGAGGAGTGGTCAGCAGGAGAAGCAACTTTGTTTGAAGAAGCCCTTCAAAAATATGGAAAAGACTTTGCTGACATTCAGAAAGACTTTCTTCCTTGGAAGAGTCTACCAAGTATAGTGGAATATTATTACATGTGGAAAACCACAGACAGATATTTACAACAGAAACGACTCAAAGCAGTCTCTAAGGAATGTAATCTAACGCAGATCTACATACCTGGCCTTGGTGGAAGTACAAGCCAGTCAGGAAAAAAGCAAACATCTACCATAATATTAACTCCCCCACCTGGTGTAGCAACCAACCTCATTGGTGTAACATGTGAAAGTTGTTATGGTACCTCGTCCCAGCAGTGGTATCCTTGGGGAGTTCCTAACTCACAGCACAAATTCTGGCTTTGCACGTTGTGCTGGATTTACTGGAAGAAATATGGTGGACTTAAAAGACCAGATGGTCTGTCTGGAAAGGGTCATGGTGGTCTCCAACCCAGCTACACCTGTAGAGTCTGTGGCAAGGTCTTCAACAGAGCAGAGCGTCTGTCTAGCCACATGGGGACACACAAGATGTACAAGTGTGCGGTGTCACGATGTGAAAAGGTTTTTAACTCTCGTCCCAACCTCACTCGGCACCTAACGGCCGTTCATGGCTGCAGACCACCCAGCCCGCGTAAACTCAAACCCAGGTCACCGTTCTATATCAGGGCCTTGCCGCTGACCAGACTGGCTCGGCGGCTGTGTCAAGATCTGTATAACAAAGTACATCATTGCCGAGTGGTCGGAGAAGCTCTGAATATCCAAGAAATCAGATCACAATGTTTAAAGAGGCTAGAGACGCCCAAAGCTGAGGCCATAATCAAAGCGAAGAAACGGAGGGTAGAACGAAAATTGCACGATGTCGTGGACAAGATTAAAGCTAACCCACCAAAACCACACAAACCTCCAAAACCGTCCAAACCAACCCTACTACCCCTCCCCAAGGAACACTCACCAACTTCACCATCCCCTCCTACTTCTACTGGTCACTCGATCACCTCCCCGTCAAGAAAAATGATCCCCCCGTCTAAGAGCTATGTACCCATACAGCCGACCCCGCCCAAGGCGAGTGACTGGAAGTACGCAGCCATCCCGTCAGCTAAACCTGTAGTACAGAGTCAGCAAACTTCCCAGCAGACGACCAACCATATGATGGCCAGGAAGCGGTCTCACGATGGCTGTTCCGTGCAACAGAATGGCATTGATGGTCCCTCAGCTAAACGACTTAGTGCAACGTCACCGTTGGGGAAGAAAGGCTGTGAGTGCACCTACTGTGGAAAGATTCTTCATAATCAGGCGAGCTTAACACACCATGAACAAACGATGCATGCGTCTGCAGAGCCGCCCAAACAGCGGTCGTACCCCGCATATTGTGACGTAAGCCCGGCTTTGGGTCCCGGATCTACCAAGATTGTGCCATATGCTCAGCACTCAGTGACGTCATACATCAATGGACAGCTTCATGTAGAGCGTGGCATGAACAATTTGCCGAACTACGCTCCCCCAGGGGCTGCAAATAAGCCGTACCTCCTTCCAAAGCCTACAGCTCCGGTGAAGGGAAATCCCGAGGGCGGTGTCATAGCGAATTCAGTGGCCACACCAGAGCCTAACAGGGTGGTAGTCGGTGAGAATGCCAAGCCGGTGGAAAATAGCAAGCCCAGTCAGGTAATCAAGTCTGTTAGCTCCAAAGGTCACCATCACCTGAATCCGCAGTTCATTGATCCGCCTGAGGAATTCCAGTTCCGCTCAAACAAACGTTCAAGGAAAGCACGCAGAGTCTTGCCAGCGGACTCCCAAAAAAAAGTTGCGAGGAAACCGTGGAAAGAAGTGAAATGTAGCGTGCATCTGCGCGCCCTTATTTACGCCATGCCCCCCCCGCCGGAAAGCGAGGCAGTAGAACCCATTGTAATTGACGATGACTAA

Transcript

rna-Spis5819_mrna

CAATAATGGCCGCGTTCGTGTGTGGTGAATGACGTTTTCGGTGGAATAGTGCACAGTCTCCATGAAAAACTTGACATTTATAATTCTTACAGATCAAAGTTTCAAATAAGAAACTCCCGCCATTAGTGAATCATGGCGAACGCATCAAACGTTTTCCGGGTTGGAGATTATGTTTACGTTGAAACTAACCCGGCGTTACCGTATCAAATACGAAGAATTGAGGAGTTGACCAAGacaAGTAATGGGCAAGTTGAAGCTAAAGTTCAGTGTTTCTACAGAAAGAGAGATTTATCTTCAGCACTTGCAGTACAGGCTGAGAAACATTTGATACAAGCAGAAGAGGATGCAGAAATTGAAATGGGTGATAGTGAAATGGAAGATGTCTTAAGACATCAGCTGATTCACAGAGAGGTCTTTTTGTCCAGACAGTATGAAAATATCAATGCCAACACCATTAGgGGAAAATGCTTGGTCACTCTTTACAATGAAGCTGAGATTCTAccaaaatatttagaaaaagaGGACTGGTTTCATTACTTTCTTGTTTATGATCCCCAACAAAAAACTTTGGTTGCTGACCGAGGAGAAATGGGAATAGGCACAGCTTATCAGGCTCAAGTACCCAAGACAGCTAAGAAAGGACTTCAAGATGACAGAGATCTTTCTAAACTGGAGACTTTGGTTTGGAACCCAAAGAATCCTTTACAAGATCAACACATCGATCAGTTTCTTGTTATAGCAAGATCTGTTGGAACATTCGCCAGAGCTCTTGATTGTAGCAGTTCAGTTAAGCAGCCCAGCTTACATATGAGTGCTGCAGCAGCTTCCCGGGACATTACACTGtCTCATGCCATGTGTGCTCTCCATAATAATGGGTACAATGTCAGCAAGGCAATTGCTAGTCTGGTTCCCTCTGGTGGACCCATTCTTTGTCGCGACGAGATGGAGGAGTGGTCAGCAGGAGAAGCAACTTTGTTTGAAGAAGCCCTTCAAAAATATGGAAAAGACTTTGCTGACATTCAGAAAGACTTTCTTCCTTGGAAGAGTCTACCAAGTATAGTGGAATATTATTACATGTGGAAAACCACAGACAGATATTTACAACAGAAACGACTCAAAGCAGTCTCTAAGGAATGTAATCTAACGCAGATCTACATACCTGGCCTTGGTGGAAGTACAAGCCAGTCAGGAAAAAAGCAAACATCTACCATAATATTAACTCCCCCACCTGGTGTAGCAACCAACCTCATTGGTGTAACATGTGAAAGTTGTTATGGTACCTCGTCCCAGCAGTGGTATCCTTGGGGAGTTCCTAACTCACAGCACAAATTCTGGCTTTGCACGTTGTGCTGGATTTACTGGAAGAAATATGGTGGACTTAAAAGACCAGATGGTCTGTCTGGAAAGGGTCATGGTGGTCTCCAACCCAGCTACACCTGTAGAGTCTGTGGCAAGGTCTTCAACAGAGCAGAGCGTCTGTCTAGCCACATGGGGACACACAAGATGTACAAGTGTGCGGTGTCACGATGTGAAAAGGTTTTTAACTCTCGTCCCAACCTCACTCGGCACCTAACGGCCGTTCATGGCTGCAGACCACCCAGCCCGCGTAAACTCAAACCCAGGTCACCGTTCTATATCAGGGCCTTGCCGCTGACCAGACTGGCTCGGCGGCTGTGTCAAGATCTGTATAACAAAGTACATCATTGCCGAGTGGTCGGAGAAGCTCTGAATATCCAAGAAATCAGATCACAATGTTTAAAGAGGCTAGAGACGCCCAAAGCTGAGGCCATAATCAAAGCGAAGAAACGGAGGGTAGAACGAAAATTGCACGATGTCGTGGACAAGATTAAAGCTAACCCACCAAAACCACACAAACCTCCAAAACCGTCCAAACCAACCCTACTACCCCTCCCCAAGGAACACTCACCAACTTCACCATCCCCTCCTACTTCTACTGGTCACTCGATCACCTCCCCGTCAAGAAAAATGATCCCCCCGTCTAAGAGCTATGTACCCATACAGCCGACCCCGCCCAAGGCGAGTGACTGGAAGTACGCAGCCATCCCGTCAGCTAAACCTGTAGTACAGAGTCAGCAAACTTCCCAGCAGACGACCAACCATATGATGGCCAGGAAGCGGTCTCACGATGGCTGTTCCGTGCAACAGAATGGCATTGATGGTCCCTCAGCTAAACGACTTAGTGCAACGTCACCGTTGGGGAAGAAAGGCTGTGAGTGCACCTACTGTGGAAAGATTCTTCATAATCAGGCGAGCTTAACACACCATGAACAAACGATGCATGCGTCTGCAGAGCCGCCCAAACAGCGGTCGTACCCCGCATATTGTGACGTAAGCCCGGCTTTGGGTCCCGGATCTACCAAGATTGTGCCATATGCTCAGCACTCAGTGACGTCATACATCAATGGACAGCTTCATGTAGAGCGTGGCATGAACAATTTGCCGAACTACGCTCCCCCAGGGGCTGCAAATAAGCCGTACCTCCTTCCAAAGCCTACAGCTCCGGTGAAGGGAAATCCCGAGGGCGGTGTCATAGCGAATTCAGTGGCCACACCAGAGCCTAACAGGGTGGTAGTCGGTGAGAATGCCAAGCCGGTGGAAAATAGCAAGCCCAGTCAGGTAATCAAGTCTGTTAGCTCCAAAGGTCACCATCACCTGAATCCGCAGTTCATTGATCCGCCTGAGGAATTCCAGTTCCGCTCAAACAAACGTTCAAGGAAAGCACGCAGAGTCTTGCCAGCGGACTCCCAAAAAAAAGTTGCGAGGAAACCGTGGAAAGAAGTGAAATGTAGCGTGCATCTGCGCGCCCTTATTTACGCCATGCCCCCCCCGCCGGAAAGCGAGGCAGTAGAACCCATTGTAATTGACGATGACTAAGATGTCGATCAAATGCAAACTTGCAACTCGCGCTTGGGACGGTTAAAGGTAGCGACATGTGTGAGTCACATGGTATGTGATGTCACCACAAGCTTTGCATGGCCTAAGATTCAGTGGCTGCTTTGATCTCGTGAGGTTCTCGAGATAACTTATTCAAAATACGAGCTATTTTGGCCTGAATCTGGACAATCTGTAGTTTATGTGGTCAACAAGTAAAACTGACCCATTTCCTTGCGTCTTCAGCGTGCAATTTGCACGAAGACGGTAAATTAAGTCTTCTTtttaattaggaaaaaaatctgGTGCTTTCTTTTCTTCGACAGCGGATGTCATATACACATTCGCAAATGTAAAGTAGTCTTCGCTGGAATATACCTCGACGAAGGAGAGAGTTAATGGTGTAGAAATTCATTTCAGTATTGACTTTAGCATTCTGTTCCATCATGTGGACTCTATTCATTCCTCAGACGATAAGTTGTGGCCACCGTGCTTAGCAATTCTTTAGAGCTCAAGACCGGTGGCGTTGATCTGATTTATGCATCCTCCCT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF17226 all species →	MTA_R1	MTA R1 domain	Domain	Interproscan
PF01448 all species →	ELM2	ELM2 domain	Family	Interproscan
PF01426 all species →	BAH	BAH domain	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR043151 all species →	Homologous_superfamily	Bromo adjacent homology (BAH) domain superfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR035170 all species →	Domain	Metastasis-associated protein MTA1, R1 domain	Interproscan
IPR000679 all species →	Domain	Zinc finger, GATA-type	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR001025 all species →	Domain	Bromo adjacent homology (BAH) domain	Interproscan
IPR000949 all species →	Domain	ELM2 domain	Interproscan
IPR040138 all species →	Family	Mesoderm induction early response protein/metastasis-associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10865 all species →	METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0016575 all species →	Biological Process	obsolete histone deacetylation	Interproscan
GO:0016581 all species →	Cellular Component	NuRD complex	Interproscan
GO:0042826 all species →	Molecular Function	histone deacetylase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11660	MTA; metastasis-associated protein MTA	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.