Gene detail

Detailed information of PFX29475.1 in Stylophora pistillata

Genomic Location: Spis.scaffold65:841584...862648
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

NSF

ATGGTCCAAATGAAAGTGATAAAATGTCCCTCGGACAAATTGTCTCTGACAAATTGTCTGGTGGTGAACGAGAATGACTTCAGCCCTGAAAGAGTAAAACATGTCGAGGTTCGGACCAATGCACTGCAGGGCTATATCTTTACCATCAAAGTATCAGAGGGTGTGCCACAAGGTTCTGTAGGATTCAGTCTTGTCCAGAGGAAGTGGACCAATGTAGCTCTTAACAGTGTCATAGATGTTGTTCCATACAGATTTGGTGAAGGATCATACCTATCAAATATTACAGTTGAAGCAGATTTTCTTCAGAAGGCCAAGAGTAATCAAGATGCTTATGATACAAACAAGATGGCAGAGGAATTTACCCACTTCTTTTTTGACCAGTCCTTTTCTGTTGGTCAGCAGGTTGCTATGGGTCTTATAACAAGAAACACCCAAGTTCTTTTTGAGAGAGCAGAGGGTTCAATGTTGAATCTGACAGGAACTGCCAAAGGAAAAGCTGCAACGCAGTCCATTATCAGCAGAGACTGGGATTTTACCAAGCTGGGAATTGGAGGCCTTGACAAGGAATTCTCCAACATTATAAGGAGAGCTTTTGCCACGAGGCTTTTCCCTCCAGAAGTAGTTGACAAATTAGGAACTGGAAAAACGCTGATGGCTCGGCAAATTGGCAAGATGTTGAATACAAGGGAACCAAAAATTATCAGTGGACCAGAGGTTCTCAATAAATACGTTGGAGAATCAGAAGCCAATATCAGAAAGTTGTTTGCCGAGGCTGAGGAGGAGCAGAAAAAGTTTGGTGACAACAGTGGACTTCACCTCATAATCTTTGATGAGTTTGATGCAGTTTGCAAGTCAAGATACATGTACAATAGCGGAGGCACTGGGGTGCAGGACTCAGTTGTAAATCAACTTCTCGCAAAGATTGATGGTGTGGAACAACTTAATAACGTTCTTCTCATCGGCATGACAAACAGAAGAGATCTCATCGATGACGCCTTACTCAGACCTGGACGACTTGAGGTACAAGTTGAAATTGGCTTACCAGATGAACAAGGACGCGTTCAAATCCTGGAGATTCACACAGCGAAAATGCGAGAACACAAGCTGCTGGCACCAGATGTTGACTTGGCTGATTTGGCCGTCAAAACAAAGAACTTTACCGGGGCAGAGATTGAGGGACTGGTGCGAGCGGCGCAGTCCACTGCCATGAACCGCTTCATTCAGCTCAAGAATAACTTCGAGATTGATCCTGAAGCAGCTGAGAAGATAATTGTGAAGCATGAGGACTTCTACCATGCCTTGGAGCATGATATCAAACCGGCATTTGGACCTTCTGACGACAATCTTGATTTGTATGTCGCCAGTGGAATTGTCCGGTGGGGTACACAAATTCAGCGGATATTAGATGATGGAGATCTTCTGTTGCAACAAACACGAACTCAGGACATCACTTCCCCGATAACGGTCCTATTAGAAGGTCCCGTTGGATGTGGCAAGACGGCCCTCGCTGTGTCCATGGCTCTAAAGTCGGACTTCCCTTTTATCAAGCTGTGTTCCCCAGAAAACATGATCGGATTTGTGGAGAGCGCAAAATGTCAGACTATTAAGAAGATATTTGATGATGCCGACAAATCACAGCTGAGCTGTATTGTCGTAGATGACATAGAGCGTTTGTTAGATTATGTTGCTATTGGGCCAAGATTTTCAAACACAGTTCTTCAAGCTTTGCTTGTATTGCTCAAGAAAAAGCTAAGGAAGGGTCGTAAACTGATTGTAATCGGAACAACCAGCTGCCGAGATGTGTTGGATTCCATGGGCATCGTGGAAGCGTTTAATACCGTCATTCATGTGCCCTCAATCTGGTCCACAGACCAACTCAAACAAGTGCTACAGACTGTTAAGCGGGACCGAGTTGACAAATTTGTAAGTCTCCTGGAAGACGAAAACTGGCGTGGTCCTTCGTCTTTCAGAACAAGCGAGGCAGTAGATTCAAAGTCTAAGAAACTATCAATTGTTAAGGGATATCTGTTGAGTTACTTGTGGTATCTGTGA

Transcript

rna-Spis5795_mrna

ATGGTCCAAATGAAAGTGATAAAATGTCCCTCGGACAAATTGTCTCTGACAAATTGTCTGGTGGTGAACGAGAATGACTTCAGCCCTGAAAGAGTAAAACATGTCGAGGTTCGGACCAATGCACTGCAGGGCTATATCTTTACCATCAAAGTATCAGAGGGTGTGCCACAAGGTTCTGTAGGATTCAGTCTTGTCCAGAGGAAGTGGACCAATGTAGCTCTTAACAGTGTCATAGATGTTGTTCCATACAGATTTGGTGAAGGATCATACCTATCAAATATTACAGTTGAAGCAGATTTTCTTCAGAAGGCCAAGAGTAATCAAGATGCTTATGATACAAACAAGATGGCAGAGGAATTTACCCACTTCTTTTTTGACCAGTCCTTTTCTGTTGGTCAGCAGGTTGCTATGGGTCTTATAACAAGAAACACCCAAGTTCTTTTTGAGAGAGCAGAGGGTTCAATGTTGAATCTGACAGGAACTGCCAAAGGAAAAGCTGCAACGCAGTCCATTATCAGCAGAGACTGGGATTTTACCAAGCTGGGAATTGGAGGCCTTGACAAGGAATTCTCCAACATTATAAGGAGAGCTTTTGCCACGAGGCTTTTCCCTCCAGAAGTAGTTGACAAATTAGGAACTGGAAAAACGCTGATGGCTCGGCAAATTGGCAAGATGTTGAATACAAGGGAACCAAAAATTATCAGTGGACCAGAGGTTCTCAATAAATACGTTGGAGAATCAGAAGCCAATATCAGAAAGTTGTTTGCCGAGGCTGAGGAGGAGCAGAAAAAGTTTGGTGACAACAGTGGACTTCACCTCATAATCTTTGATGAGTTTGATGCAGTTTGCAAGTCAAGATACATGTACAATAGCGGAGGCACTGGGGTGCAGGACTCAGTTGTAAATCAACTTCTCGCAAAGatTGATGGTGTGGAACAACTTAATAACGTTCTTCTCATCGGCATGACAAACAGAAGAGATCTCATCGATGACGCCTTACTCAGACCTGGACGACTTGAGGTACAAGTTGAAATTGGCTTACCAGATGAACAAGGACGCGTTCAAATCCTGGAGATTCACACAGCGAAAATGCGAGAACACAAGCTGCTGGCACCAGATGTTGACTTGGCTGATTTGGCcgtcaaaacaaagaactttACCGGGGCAGAGATTGAGGGACTGGTGCGAGCGGCGCAGTCCACTGCCATGAACCGCTTCATTCAGCTCAAGAATAACTTCGAGATTGATCCTGAAGCAGCTGAGAAGATAATTGTGAAGCATGAGGACTTCTACCATGCCTTGGAGCATGATATCAAACCGGCATTTGGACCTTCTGACGACAATCTTGATTTGTATGTCGCCAGTGGAATTGTCCGGTGGGGTACACAAATTCAGCGGATATTAGATGATGGAGATCTTCTGTTGCAACAAACACGAACTCAGGACATCACTTCCCCGATAACGGTCCTATTAGAAGGTCCCGTTGGATGTGGCAAGACGGCCCTCGCTGTGTCCATGGCTCTAAAGTCGGACTTCCCTTTTATCAAGCTGTGTTCCCCAGAAAACATGATCGGATTTGTGGAGAGCGCAAAATGTCAGACTATTAAGAAGATATTTGATGATGCCGACAAATCACAGCTGAGCTGTATTGTCGTAGATGACATAGAGCGTTTGTTAGATTATGTTGCTATTGGGCCAAGATTTTCAAACACAGTTCTTCAAGCTTTGCTTGTATTGCTCAAGAAAAAGCTAAGGAAGggTCGTAAACTGATTGTAATCGGAACAACCAGCTGCCGAGATGTGTTGGATTCCATGGGCATCGTGGAAGCGTTTAATACCGTCATTCATGTGCCCTCAATCTGGTCCACAGACCAACTCAAACAAGTGCTACAGaCTGTTAAGCGGGACCGAGTTGACAAATTTGTAAGTCTCCTGGAAGACGAAAACTGGCGTGGTCCTTCGTCTTTCAGAACAAGCGAGGCAGTAGATTCAAAGTCTAAGAAACTATCAATTGTTAAGGGATATCTGTTGAGTTACTTGTGGTATCTGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029067 all species →	Homologous_superfamily	CDC48 domain 2-like superfamily	Interproscan
IPR003338 all species →	Domain	CDC48, N-terminal subdomain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR039812 all species →	Family	Vesicle-fusing ATPase	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR009010 all species →	Homologous_superfamily	Aspartate decarboxylase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23078 all species →	VESICULAR-FUSION PROTEIN NSF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005795 all species →	Cellular Component	Golgi stack	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0035494 all species →	Biological Process	SNARE complex disassembly	Interproscan
GO:0043001 all species →	Biological Process	Golgi to plasma membrane protein transport	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX29475.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.