Gene detail

Detailed information of PFX29515.1 in Stylophora pistillata

Genomic Location: Spis.scaffold64:704390...712125
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

SKAP2

ATGGATCCAGTCGGCAAGGATATTAAAGAGGCCATTTGTGAGGCTGAAAAGTTTTTTTCAATTACACTGGCTAAAGAAAAACTTTCTCCAGCAGCAGAAATAGAGCGTACCTTGCTAGCAGATAAGTTCAGAAAGTTAAAAACCCAACTAGGATTGCAAAATGAATTACCTAGTGGTGGCAAAGCACCTCCACGTCCACCGAAGGGTGCAGTTCCAATGCCAGCACCAGTACCTGTTGCCAATGATGACCAGGGTGGAGATGAACTCTATGATGATGTGGCTGCTGTAATAGCACAGGATGATCAATACTATGAAATGAGCCAAGATGCCGAGGGAAAAGAGGTACCATCTTCAACAGCTACAGATACAGGTGGTGAGAATTATGAGGTGATGTCAGCTGAGCAGGAAAGTAAGGCACAAGGTGGTGAAACTGCTGGTGAAGACTACATGGCTATGGAGGATGATCTACACCAAGAAGATTATGTAGAACCTCAAGCAGAGAACACTGCAGATGAGGATTATGAAGTTCCAGAACAAAGTGTCAAGCCTCCAGCTCCAGCTGAGCAAGAAGAGAACTATGAGATCCCAGGTGCTGATGAAAACTACGAAGACACAGACCCTTCTGGTCCAAAAGACACAGATGTTGAGATGTATGAAGGTATTGAACCACCAGAAAGTGTAGATGGAACTGTCAACTGGAATCAACTAAAACAGAGCACAAGTCCTGAGAACATTCAAGGTGTCATTATAGGAGGTATTTTGAACAAACGTCGCAAGGAAGGAAAGGTGTATTTGGGGAGTAAGTTTCAGAAGAGGTACTGTGTGGTGCGTAATCACGCGATGTACTACTTTAAGGACAAGAAGGCCAACAAACAACAAGGACATATCTTGCTGCCAGGTTATAAAGTACAGCTAGACAGCAAGAAAGGACGAGAGTTTCATCTCACACATTCGGGTGGCCAGAGGACTTACCAGTTTGAGGCAAACAATAAAGAAGAAGCAGAAAAGTGGATGAAAGCCATTCAGAGGGCTTGTGATGCTCCGCTGTCTGATCATCAAAGGGCTGAATTAGAAGAACTCCGTAACAGGCAAACCTCAGGAGATAATGACAGCCTTCACTATGTCCCAGTTGAAGCGGGACAAACGAAGAACGAAAGTGTGGAAGAAGAAGAGGAACTGTATGATGACACTCAAGAAGATTTATACGAGGCAGTAGAGACCGTTCAATCATCTGTGTCAAACCAGCCTTCTCCAGGACCCACACAAGAACTGGTTGACTACGAAGTTTCTCCCTCGGCTGTCCCTTCAAAACAAGCTCCGCTTCCTCCTTCTCCGGGCGAAGTCAAAACAGTCGAACCCATACAAGAAGAGGAATACGAACTACCTGAGACATCTGCACCTCCACCACGACCCATCAAGACAGAACCCATGCCACCCATCCCCAGCGGAGACAATCCACCAGAGGTACCCCCCCCTCGACCTTCCAAAGGACAGCTACCCATCCCTCCTGTCTCTCCTGCCCCACCTGCCCCTCCCGCACCGCAGCAAGATGACATGTATGAAGTTGCTGGACCGGACGCCCCTAACGACACCTCAGACTTACCGCCTCCCCCACCCCCTGTGTTAGAGGAAGAAAATTACGAAGTTCCCGATAATGAAGCTCCTGCTCCACCCCCGATGCGTCCTCCCAAAAGACCTCAACCCCAGACTCCTAAACCGCAAGCCATTCCTCTAGTGGAGTCACCAGCAGAAAAAGTTCCCGAGCGACCCTCAAAGCCGGTTGCTAAGCAACCACCTCCTGCACCTAAACGGAAAGTTGAACCACCCGCGAGTCCTGCAGAAGTTCAAACGATCGAAATCAACTATGCTAACATCTACCAAGCCCTGTGGACATGTGATGCAGACGACAAAGATGAACTGGCATTCCGGCGAGGTGACCTGATTTATATTTACGAAAAGCCGCATAACGATTGGTGGATCGGGTCTTTGTTCAAACCTCAGGGATATAGTGTAGGTCTGGTGCCGAAAAAGTACGTCATGGAGGCGTACGAAATGACCGCCTAA

Transcript

rna-Spis5736_mrna

GTGCAGAAAGCGATTGTTTATTGGTGTAGAAGGCAAtgtatttttcattaatttggtAGTTTAGTTTTCGTTTTAAGCGAACTATCGATGGATCCAGTCGGCAAGGATATTAAAGAGGCCATTTGTGAGgctgaaaagtttttttcaattacactggctaaagaaaaactttctcCAGCAGCAGAAATAGAGCGTACCTTGCTAGCAGATAAGTTCAGAAAGTTAAAAACCCAACTAGGATTGCAAAATGAATTACCTAGTGGTGGCAAAGCACCTCCACGTCCACCGAAGGGTGCAGTTCCAATGCCAGCACCAGTACCTGTTGCCAATGATGACCAGGGTGGAGATGAACTCTATGATGATGTGGCTGCTGTAATAGCACAGGATGATCAATACTATGAAATGAGCCAAGATGCCGAGGGAAAAGAGGTACCATCTTCAACAGCTACAGATACAGGTGGTGAGAATTATGAGGTGATGTCAGCTGAGCAGGAAAGTAAGGCACAAGGTGGTGAAACTGCTGGTGAAGACTACATGGCTATGGAGGATGATCTACACCAAGAAGATTATGTAGAACCTCAAGCAGAGAACACTGCAGATGAGGATTATGAAGTTCCAGAACAAAGTGTCAAGCCTCCAGCTCCAGCTGAGCAAGAAGAGAACTATGAGATCCCAGGTGCTGATGAAAACTACGAAGACACAGACCCTTCTGGTCCAAAAGACACAGATGTTGAGATGTATGAAGGTATTGAACCACCAGAAAGTGTAGATGGAACTGTCAACTGGAATCAACTAAAACAGAGCACAAGTCCTGAGAACATTCAAGGTGTCATTATAGGAGGTATTTTGAACAAACGTCGCAAGGAAGGAAAGGTGTATTTGGGGAGTAAGTTTCAGAAGAGGTACTGTGTGGTGCGTAATCACGCGATGTACTACTTTAAGGACAAGAAGGCCAACAAACAACAAGGACATATCTTGCTGCCAGGTTATAAAGTACAGCTAGACAGCAAGAAAGGACGAGAGTTTCATCTCACACATTCGGGTGGCCAGAGGACTTACCAGTTTGAGGCAAACAATAAAGAAGAAGCAGAAAAGTGGATGAAAGCCATTCAGAGGGCTTGTGATGCTCCGCTGTCTGATCATCAAAGGGCTGAATTAGAAGAACTCCGTAACAGGCAAACCTCAGGAGATAATGACAGCCTTCACTATGTCCCAGTTGAAGCGGGACAAACGAAGAACGAAAGTgtggaagaagaagaggaactGTATGATGACACTCAAGAAGATTTATACGAGGCAGTAGAGACCGTTCAATCATCTGTGTCAAACCAGCCTTCTCCAGGACCCACACAAGAACTGGTTGACTACGAAGTTTCTCCCTCGGCTGTCCCTTCAAAACAAGCTCCGCTTCCTCCTTCTCCGGGCGAAGTCAAAACAGTCGAACCCATACAAGAAGAGGAATACGAACTACCTGAGACATCTGCACCTCCACCACGACCCATCAAGACAGAACCCATGCCACCCATCCCCAGCGGAGACAATCCACCAGAGGTACCCCCCCCTCGACCTTCCAAAGGACAGCTACCCATCCCTCCTGTCTCTCCTGCCCCACCTGCCCCTCCCGCACCGCAGCAAGATGACATGTATGAAGTTGCTGGACCGGACGCCCCTAACGACACCTCAGACTTACcgcctcccccaccccctgtGTTAGAGGAAGAAAATTACGAAGTTCCCGATAATGAAGCTCCTGCTCCACCCCCGATGCGTCCTCCCAAAAGACCTCAACCCCAGACTCCTAAACCGCAAGCCATTCCTCTAGTGGAGTCACCAGCAGAAAAAGTTCCCGAGCGACCCTCAAAGCCGGTTGCTAAGCAACCACCTCCTGCACCTAAACGGAAAGTTGAACCACCCGCGAGTCCTGCAGAAGTTCAAACGATCGAAATCAACTATGCTAACATCTACCAAGCCCTGTGGACATGTGATGCAGACGACAAAGATGAACTGGCATTCCGGCGAGGTGACCTGATTTATATTTACGAAAAGCCGCATAACGATTGGTGGATCGGGTCTTTGTTCAAACCTCAGGGATATAGTGTAGGTCTGGTGCCGAAAAAGTACGTCATGGAGGCGTACGAAATGACCGCCTAAAGTTAGCttgtaaaacaattttctacGCCTTCTTCTTCAACTGAGCGTCTCTTGTTAGTGCAAGTTTGTTGCGAAACCCAGTTCAACCAATGAGCGAAATCggaatatttttctgtatttttttttttttt

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR037781 all species →	Family	SKAP family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15129 all species →	SRC-ASSOCIATED ADAPTOR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23471	SKAP2; src kinase-associated phosphoprotein 2	-	Yersinia infection	ko05135	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.