Gene detail

Detailed information of PFX29522.1 in Stylophora pistillata

Genomic Location: Spis.scaffold64:762489...794450
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Tbcd

ATGGCGGTGAAGGAGGACGATAATTCGGTGACATACAGCTTGGATCATTTTACCGAGCTCAAAGAAGTAACATCATTGATCGAATCAATAGGAACGATATGTCATGATAATATTTTACTCGAGGCTGCAGAGGAGCGGTTAATTCTTATATTGAATAAGTATCAAGAGCAGCCGCATTTGTTGGATCCGCATTTAGAAAGCCTTGTAAAGAAATTACAACATATCGTCTGTAATGCATCAAATCTAGCTAGAGTGATTCAACAGGCATTCAAATATTTATATTTCATCACCAAGGTCAGGGGACCTAAATATGTGGTACGACTGTTTTCTCATGAAGTTACTGATGTGGAACCACTTCTTAGAATGCTGTCTCAGCAAAATCCTCAAGATCATGAGACCTGGGAGACACGCTATGTTCTTCTACTGTGGTTGTCTATTGTTTGTATGATACCCTTTGACATGGCTCGCTTTGATGGGTTAAGAAAAGCCTCTGATGAAACACAGGAGAGATGCAAGCCTGTGGTGGAGAGAATTCTTGAAACTGCAAAGATGTATCTTTCAGTTCCAGACAAATCAAGAGATGCTGCTGCATTAGTGATTTCAAAGTTTGTTACAAGACCCGATGTGAAGAAAGAAAAGTTGGCAGAATTTCTTGACTGGTGTTTAATAAGGATGGAGAAAGCAAATGGTGAAACAATGGATGGAATGCTGTTGCTGACAGGAATCTTGACAACATTGGCCCTGCTTTTCAAGCATGGAAAGCGAGATGACTTAATACCATATGCTCCTACAGTTTTGAAGCAAATAGGAGCACGTGAGATTTCCAACATTAACAACACACTGCTTAGGAAGCTGAATATTAAACTTACACAGCGCCTTGGTTTAACATTTCTGAAGCCTAGGATAGCGGCCTGGAGATATCAGAGAGGGAGTCGATCTTTGGCTTTCAACCTGGAAAATCCATTCTCTCAAGAAGAGAATGAAAATGGTCACCATACAACAGGATTAAGCAGAGATGAGGAAGAAGATTATGATGTTCCTGAAGAACTAGAAGATATAATTGAGAAACTTTTGACTGGCCTCCGAGACAAGGATACTGTAGTGCGATGGTCAGCGGCTAAAGGGATCGGAAGAATAACTGGGAGACTTCCTCAAGAATTAGCGGACCAGATTGTGGAAAACGTCCTAGAACTGTTCAGTAGCCGGGAATCAGATAGTGGCTGGCATGGAGGTTGTTTAGCTCTTGCTGAACTTGGTCGTAGAGGACTTCTTCTTCCCGATAGGCTCCCTGAAGTTGTCCCTGTTGTACTGAAAGCTTTGTCTTATGATGAAATGAGAGGAACATACAGTGTTGGGAGCCATGTTAGGGATGGTGCTTGCTATGTTTGTTGGTCATTCGCCAGAGCTTACGATCCAAAAGAGATCCAACCCCACGTGCACGGCATATCCAGTTCTCTCATAATTGCCGCTCTGTTTGATCGAGAAGTGAACTGCAGGCGGGCTGCTTCGGCTGCATTTCAAGAAAATGTGGGAAGACAGGGAACTTTTCCTCATGGCATCGATATTCTTACGATGGCCGACTACTTTGCGGTTGGGAACAGAGTTAATACCTACCTGACTGTAAGTGTATCAGTAGCGGCGTTTAAGGAATATACAAAAGCGTTGATTGACCATCTCGCAAATGTTAAGTTACAGCACTGGGACAGAACCATTCGAGAATTGGCATCTCAAGCTTTACACAATCTAACTCCTTCAGATCCAGAATACATGGCTAAGACTGTTTTTCCAAGAATTCTTTCACAAACGAACAATATCGACCTGAACACGCGCCATGGCTGCATCCTGGGTTGCTCTGAAGTAATACACGCTCTGTTTCTTTACACTAAGGGAAACGGAAGATTGCTAACGGACTTGGTTGACAAAGATTGTTTTGAAATCATGAAAGACTTTGTACCTCAGCTTAACTCGGCAAAAAGCTTCAGAGGTCTAGGAGGGGACTACATGCGACAGGCAGTTTGTCATCTAATAATGAAATTGTCACTATCGGAATTACCTTGGCATGGAGATCAGATCATCGGCGTATTTCAAGACACTATCGATGACAACCTCTCACACACAGAACCCATTATACAGGAAGGAGCTGTTCGAGCCCTCGGTGCTTTGTGTGAGCAGTATTACGTCAAAGACGACGGTGTAGCTATCGATGGAATACAAGATAGTATTATCACACATTACGTTGGGCAGTTAAAAAGCCCTTCAGAGTTCTCGAGAGTTGGGTTCGCTCAAGCTTTAGGATTTTTGCCAAAATTCATTCTGTCATCTAGGCTAAAAGTGGTATTTACTGGTTTGATCACAGCCTCACAGCTAGCGGATGATCCGGGAAAATTTGCTGAATCGAGGAGAGAGGCGCTCAAATCTCTTGCAAGAATCGCTTGCACCGTTGGACTGAATAGGACTGGAGACGAAGAAGAAGTTGTGACAGAAGGCAGTGTTCATGTACTTTATGAGGCTTTTTTCGTTGCTATGAATGACTACACGATTGACAGCAGAGGAGATGTCGGCGCTTGGGTGCGTGAAGCTAGCATGAGCGGGTTGGAAACCCTGACTCGATTTGTTGTAGAAAGTGATCATTCTCTTTTTACGCCAGAGATCTGTGAGCGGGTGATGTGCTGTCTTGCGCAGCAGTCTTCCGAGAAAATAGATCGGACAAGAGCTCATGCCGGGGAGATATTCCTCAGGCTTCTGTACATGGACAGTCCTAGGTTGCCGCATATACCGCACCACGAAGAGCTTCTCGACATTTTTCCAAAGGATAAGTGTTTAGAAATGAATTGGAGCGCTTCTGCAGAATGTTTTCCTCGAATAACGAAGCTCCTCGGTTTGGCGTCGTACAGAAAATCGGTTCTTCTGGGCTTAACTGTCAGTGTTGGAGGGCTAACAGAATCACTGGTACGACATTCCCATTCATCGTTGCTAAGATTCTTGAAAGTCATAAGCAAGAGTGAGCCTCAGATGAACGAGATTGCGGAAGCCCTTTTAGATATCTTTCGAAAAAATGAAAAAAATGACAGAATTATAGTTCCGTTATTCAAGATGCTTGATATGCTGTTAGCCAATGGCTGCTTTGAGCTGTTCGCCCAGGATGAAAGCCATCCTTTCCCTGCAGCCGTTTTCAACCTCACAAAGAAGGAAATCTTCAAGATTGGTGACGCTAGAAAGTTACTCACGAGTGTCAGTGTATTTTGCGGCTTGTTACAGTTTCCAGGGGCAACAAGAACGAGAGCATTCCAACAGCTCTCCATTTTTCTCTGTCATCGATACCCTCAGGTACGTAAATCTACCGCTGATCACCTGTACTCGGCAGTGCTGACGTATGATGACATCATACCGGCAGAAAATTTTGATGAAGTTTTAGCGATACTGACCGAAACTTCATGGGATGTAAAGATTGAAGAACTTCGTGTCATAAGGAACAGACTTTGTGACATTATAGGCATCCCTCATCCGGTTTTAAAGTCTTCCACGGCGCCAAACACCGTCAAGAAAAAGAAAGATGAATTAGACAGCTACAAAGACTTGGTCAGTCGTGGTTATTAG

Transcript

rna-Spis5741_mrna

ATGGCGGTGAAGGAGGACGATAATTCGGTGACATACAGCTTGGATCATTTTACCGAGCTCAAAGAAGTAACATCATTGATCGAATCAATAGGAACGATATGTCATGATAATATTTTACTCGAGGCTGCAGAGGAGCGGTTAATTCTTATATTGAATAAGTATCAAGAGCAGCCGCATTTGTTGGATCCGCATTTAGAAAGCCTTGTAAAGAAATTACAACATATCGTCTGTAATGCATCAAATCTAGCTAGAGTGATTCAACAGGCATtcaaatatttatatttcatcacCAAGGTCAGGGGACCTAAATATGTGGTACGACTGTTTTCTCATGAAGTTACTGATGTGGAACCACTTCTTAGAATGCTGTCTCAGCAAAATCCTCAAGATCATGAGACCTGGGAGACACGCTATGTTCTTCTACTGTGGTTGTCTATTGTTTGTATGATACCCTTTGACATGGCTCGCTTTGATGGGTTAAGAAAAGCCTCTGATGAAACACAGGAGAGATGCAAGCCTGTGGTGGAGAGAATTCTTGAAACTGCAAAGATGTATCTTTCAGTTCCAGACAAATCAAGAGATGCTGCTGCATTAGTGATTTCAAAgtttgttaCAAGACCCGAtgtgaagaaagaaaagttggCAGAATTTCTTGACTGGTGTTTAATAAGGATGGAGAAAGCAAATGGTGAAACAATGGATGGAATGCTGTTGCTGACAGGAATCTTGACAACATTGGCCCTGCTTTTCAAGCATGGAAAGCGAGATGACTTAATACCATATGCTCCTACAGTTTTGAAGCAAATAGGAGCACGTGAGATTTCCAACATTAACAACACACTGCTTAGGAAGCTGAATATTAAACTTACACAGCGCCTTGGTTTAACATTTCTGAAGCCTAGGATAGCGGCCTGGAGATATCAGAGAGGGAGTCGATCTTTGGCTTTCAACCTGGAAAATCCATTCTCTCAAGAAGAGaATGAAAATGGTCACCATACAACAGGATTAAGCAGAGATGAGGAAGAAGATTATGATGTTCCTGAAGAACTAGAAGATATAATTGAGAAACTTTTGACTGGCCTCCGAGACAAGGATACTGTAGTGCGATGGTCAGCGGCTAAAGGGATCGGAAGAATAACTGGGAGACTTCCTCAAGAATTAGCGGACCAGATTGTGGAAAACGTCCTAGAACTGTTCAGtagCCGGGAATCAGATAGTGGCTGGCATGGAGGTTGTTTAGCTCTTGCTGAACTTGGTCGTAGAGGACTTCTTCTTCCCGATAGGCTCCCTGAAGTTGTCCCTGTTGTACTGAAAGCTTTGTCTTATGATGAAATGAGAGGAACATACAGTGTTGGGAGCCATGTTAGGGATGGTGCTTGCTATGTTTGTTGGTCATTCGCCAGAGCTTACGATCCAAAAGAGATCCAACCCCACGTGCACGGCATATCCAGTTCTCTCATAATTGCCGCTCTGTTTGATCGAGAAGTGAACTGCAGGCGGGCTGCTTCGgCTGCATTTCAAGAAAATGTGGGAAGACAGGGAACTTTTCCTCATGGCATCGATATTCTTACGATGGCCGACTACTTTGCGGTTGGGAACAGAGTTAATACCTACCTGACTGTAAGtgtatcaGTAGCGGCGTTTAAGGAATATACAAAAGCGTTGATTGACCATCTCGCAAATGTTAAGTTACAGCACTGGGACAGAACCATTCGAGAATTGGCATCTCAAGCTTTACACAATCTAACTCCTTCAGATCCAGAATACATGGCTAAGACTGTTTTTCCAAGAATTCtttcacaaacgaacaataTCGACCTGAACACGCGCCATGGCTGCATCCTGGGTTGCTCTGAAGTAATACACGCTCTGTTTCTTTACACTAAGGGAAACGGAAGaTTGCTAACGGACTTGGTTGACaaagattgttttgaaatcatgAAAGACTTTGTACCTCAGCTTAACTCGGCAAAAAGCTTCAGaggtCTAGGAGGGGACTACATGCGACAGGCAGTTTGTCATCTAATAATGAAATTGTCACTATCGGAATTACCTTGGCATGGAGATCAGATCATCGgCGTATTTCAAGACACTATCGATGACAACCTCTCACACACAGAACCCATTATACAGGAAGGAGCTGTTCGAGCCCTCGGTGCTTTGTGTGAGCAGTATTACGTCAAAGACGACGGTGTAGCTATCGATGGAATACAagATAGTATTATCACACATTACGTTGGGCAGTTAAAAAGCCCTTCAGAGTTCTCGAGagTTGGGTTCGCTCAAGCTTTAGGATTTTTGCCAAAATTCATTCTGTCATCTAGGCTAAAAGTGGTATTTACTGGTTTGATCACAGCCTCACAGCTAGCGGATGATCCGGGAAAATTTGCTGAATCGAGGAGAGAGGCGCTCAAATCTCTTGCAagAATCGCTTGCACCGTTGGACTGAATAGGACTGGAGACGAAGAAGAAGTTGTGACAGAAGGCAGTGTTCATGTACTTTATGAGGCTTTTTTCGTTGCTATGAATGACTACACGATTGACAGCAGAGGAGATGTCGGCGCTTGGGTGCGTGAAGCTAGCATGAGCGGGTTGGAAACCCTGACTCGATTTGTTGTAGAAAGTGATCATTCTCTTTTTACGCCAGAGATCTGTGAGCGGGTGATGTGCTGTCTTGCGCAGCAGTCTTCCGAGAAAATAGATCGGACAAGAGCTCATGCCGGGGAGATATTCCTCAGGCTTCTGTACATGGACAGTCCTAGGTTGCCGCATATACCGCACCACGAAGAGCTTCTCGACATTTTTCCAAAGGATAAGTGTTTAGAAATGAATTGGAGCGCTTCTGCAGAATGTTTTCCTCGAATAACGAAGCTCCTCGGTTTGGCGTCGTACAGAAAATCGGTTCTTCTGGGCTTAACTGTCAGTGTTGGAGGGCTAACAGAATCACTGGTACGACATTCCCATTCATCGTTGCTAAGATTCTTGAAAGTCATAAGCAAGAGTGAGCCTCAGATGAACGAGATTGCGGAAGCCCTTTTAGATATCTTtcgaaaaaatgaaaaaaatgacagAATTATAGTTCCGTTATTCAAGATGCTTGATATGCTGTTAGCCAATGGCTGCTTTGAGCTGTTCGCCCAGGATGAAAGCCATCCTTTCCCTGCAGCCGTTTTCAACCTCACAAAGAAGGAAATCTTCAAGATTGGTGACGCTAGAAAGTTACTCACGAGTGTCAGTGTattttgCGGCTTGTTACAGTTTCCAGGGGCAACAAGAACGAGAGCATTCCAACAGCTCTCCATTTTTCTCTGTCATCGATACCCTCAGGTACGTAAATCTACCGCTGATCACCTGTACTCGGCAGTGCTGACGTATGATGACATCATACCGgcagaaaattttgatgaagTTTTAGCGATACTGACCGAAACTTCATGGGATGTAAAGATTGAAGAACTTCGTGTCATAAGGAACAGACTTTGTGACATTATAGGCATCCCTCATCCGGTTTTAAAGTCTTCCACGGCGCCAAACACcgtcaagaaaaagaaagatgaatTAGACAGCTACAAAGactTGGTCAGTCGTGGTTATTAGAACTTTTCCTCTAATAACATCCCTTGGAACTGTAGAGGTGACTACATATGATTGAAAACGAGGTACAGGTTATCGGTTCCTCTCCCCTCCCCGCTGGAGGGCGATTTCGGCCAGTAAAAAGACATGAAAACGGGTAGCATACGGTAACTTGATGGCCTCTTGCTAATTACGGAGCTTTCACTTTCGAAAGATAATTCGAATAAATGTACTGAAGATGGGCAACCCACTGCTTTTGTGTAAAGTCGTTGCGAAAACAGGCACGATCAACAGACTAGTTATCTTTACCAATTATGCCACGGAGGACAGTGCAACCATTTCAACACCCACTTTCGTTTAAGATGTTGTTGACTTCGAACAGTTAGCgttcaaaaaatcaaaaatgctAACAGGCCGCTCTgatttatgtaaatttttcacatgaaaacatttatttatgactgaaaaatattgtattatatttacgaatttattttaagaaatgaaGCCAACATTGCAACCTTGCTTAAGTGTGGCATTGcttcaaatatttcaatttttcttcgtAGTGCTTGTATATTCATTGCATgcgttgaaaataaaaaatccaaattttgaaaacaaaagactactagtctctgcggagttctaatgttatcgctattgttttcatttaacgaagactgaatgcatatttaatgttggggttatatGGCACTCTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12612 all species →	TFCD_C	Tubulin folding cofactor D C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033162 all species →	Family	Tubulin-folding cofactor D	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR022577 all species →	Domain	Tubulin-specific chaperone D, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12658 all species →	BETA-TUBULIN COFACTOR D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0007021 all species →	Biological Process	tubulin complex assembly	Interproscan
GO:0007023 all species →	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0016328 all species →	Cellular Component	lateral plasma membrane	Interproscan
GO:0034333 all species →	Biological Process	adherens junction assembly	Interproscan
GO:0048487 all species →	Molecular Function	beta-tubulin binding	Interproscan
GO:0070830 all species →	Biological Process	bicellular tight junction assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21767	TBCD; tubulin-specific chaperone D	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.