Gene detail

Detailed information of PFX29795.1 in Stylophora pistillata

Genomic Location: Spis.scaffold60:273224...300683
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

NOP14

ATGGTGAAATCAAAGAAAGCCGCTTTAAAGTTAGCGAGAACATCCGGTCGCAAAAAAACCAGAGAAGTCGCAAACAATCCTTTTGAAATACATACAAATAAACGAAAGCATGATATCCTGGGAAGGAAGCTTAAACACGACAAGGGATTACCCGGGATTTCAAGGTCAAAAGCTATAAAGAAGAGGCAAAAAACACTCCTGGTGGAGCACAAACAGAAAAACAAGGCTAACATGTTTATTGATCGTCGTTTTGGTGAATATGATGAAAAAATGTCACTGGAAGAAAAGATGTTGAAGAGATTTACCATGGAAAAAAAGCATCATCATGAACGCCATGGAAAATACAGATTGGAGGATGAAGAGCTCACTCACTTAGGGCAGTCACTTGGTGAAATTGACAAGTTTGAAGATGTGCAACTGAGTGATGATGAGGATGATGTTATGGACAAGACAGAGGAAGCTGATGATGTTAGAGAGTTGCATTTTGGTGGTTTTCTCACAAAGAAAAGAACAGATGATGAGCAGATTTCAGGAAAACACAAAAGCAAGAAAGAGATCATGGAGGAAGTGGTCGCCAAAGCAAAGATCAAAAAGCATGAGCGGCAAATGGCCAAAGAAGAGACAGTCACCTTAACAGACAAGCTGGATCAGGATTGGAAGAACAAGAGGAATCTGATTTCACTAAAGGCACCAAACACTGAAGAGGCTGTTTCCAAAGTAGATGATTATGACATTGCTGTCAGACAGTTGGCTTTTGAAATTAAAGGGAAAGCCACTGACAGACTGAAGTCTGAACAAGAGATTGCCAAAGAAGAGCAGAAACGACTGGAAAAATTAGAGCTTGAGCGTCAACGAAGAATGAGAGGTTTACCTGCTGTGGCCGAGAAACCAAAGCATATATCAGCTGATGACCTTGGTGACAGTTTCACACCTGCTCTCAATGAAAGGGTTATGCTTAGTTATCAAGATGGACCAGTGAGTGATATGGAAGATCATGAAGAGGAGGATCAGATAAGAAGTGATGCTGAAAACAGTGATGAAGAATCTGAGGTAGATGGAGGGGAAGAGGAAGAAGAGGAAGGGGACAATTCTGCTGCTGGTGATGATAATAATGATGATGATGAGGAGGAGGCAGAGGATCAAGATAGTGAAAGCTGTCAAGAAGACAATGGTTCTGACCTTGAATCAGATGTGAGCAATGATGCTATGGAAGATGAGGCTGACTCAGAAATACTAGGAAATCAGCAGCAACAACAGGAAAAAGTGCAGAAAGAAAAGACTGAGGCAGAGGTTGTTGAGCTAACAAAAGAAGAACTACCATTTACTTTTAAAGCACCAAAATCTTTTCCAGAATTCAAAGAACTCATTAAAGGCTGGTCATTTAAACAACAGTTGACAATAATTGACAGAATCAAGGCATGCCACAATCCCAAGATTACTCCTGCAAATAAACCAAAAATGGAGGTATTGTTTACCACTTTGTTGGATTATGTCGGTGAACTCATCCAGATGGGCTCTGAAGGGCTCAAGATGATCGATGAGCTGTCAAGACATCTCTTTGATGTAGCTCAGTACTCTCCGGTCCACTCCGCCAAGTGCATGCAACAGATTGTACAGGATATACACAAGAAATTCTCACAGAACTGCGATAGACAAGGTGGAAAAGGGATGTTCCTGGGTCTTTCTGAGTTACTTTATCTCCGCGTTGTATCAATGTTGTTTTCCACGTCAGACTTCAGACACGCTGTTTGTACACCAACTATGGTTCTGCTTTCCCAGGTTCTTTGCCAGTGTCCTGTACGGTGCATAAGAGATGTACTCAGGGGTCTTTTTGTCTGCGACTTGTTTCATGAGTTCGTATCTCTATCAAAGCGATTCGTTCCTGAGGTTGTCAACTTCCTCTGTGGAATTCTCTTTATGGCTTCCAAGAAGGAAGGCCCTACCCCTCAGCTTGTTCTCCCATTCAAACACTGTAGCAAATGGCGCGACCTTCTCAAACTACAGTCAGATTCAAGTTTTTTGACCGTCAAACCCTTACCGCTGACCACTCTCGGAGAAAGTACTGCAGATGAAAAGACGACGGACGAAACAAGGGTTAACTCAGTACACCATTGCTTGTCCGTTTTGCAAAAATTTGTGGATTTGTATCAGGACTTACCCGCAAGTTTTGAGATTTTTGCTCCGGTGAAAGAACATTTACAAAGAATACCTTTAGATCTTTATCCTGCTTCTGTTCAGGAAATTCACAGCGTTCTTCTAACGAGATTAAATGGACTCTACGCCAAGAGCCTGAATCGTAAACATCTCACATTACAAGCGCGTAAACCGGAACCTATTAAGACATACGAACCAAAGTTTGAGGAGCATTATGAGGTTCGATCAAGGAGAGGTACTGGGAACAAGGCAACGAACGAAAAACAGAAGCTACGATACAAATACAAGAGAGAATTTAAGGGCGCTATACGAGAAATAAGAAAGGATAACCAGTTCCTTGCGAAACAAAAGCTGAAAGAACAGTTAGAGAGGGACACAGAACGTTTGCGTAAAGTCAAGGAAATAGAACATATGCTGTCCAACCAGCAAGCAGAAACCAACGCTATGAACCGTAAGAAAAGAAAACGGGGAAAGTAA

Transcript

rna-Spis5404_mrna

ATGGTGAAATCAAAGAAAGCCGCTTTAAAGTTAGCGAGAACATCCGGTCGCAAAAAAACCAGAGAAGTCGCAAACAATCCTTTTGAAATACATACAAATAAACGAAAGCATGATATCCTGGGAAGGAAGCTTAAACACGACAAGGGATTACCCGGGATTTCAAGGTCAAAAGCTATAAAGAAGAGGCAAAAAACACTCCTGGTGGAgcacaaacagaaaaacaagGCTAACATGTTTATTGATCGTCGTTTTGGTGAATATGATGAAAAAATGTCACTGGAAGAAAAGATGTTGAAGAGATTTACCATGGAAAAAAAGCATCATCATGAACGCCATGGAAAATACAGATTGGAGGATGAAGAGCTCACTCACTTAGGGCAGTCACTTGGTGAAATTGACAAGTTTGAAGATGTGCAACTGagtgatgatgaggatgatgttATGGACAAGACAGAGGAAGCTGATGATGTTAGAGAGTTGCATTTTGGTGGTTTTCTcacaaagaaaagaacagaTGATGAGCAGATTTCAGGAAAACACAAAAGCAAGAAAGAGATCATGGAGGAAGTGGTCGCCAAAGCAAAGATCAAAAAGcaTGAGCGGCAAATGGCCAAAGAAGAGACAGTCACCTTAACAGACAAGCTGGATCAGGATTGGAAGAACAAGAGGAATCTGATTTCACTAAAGGCACCAAACACTGAAGAGGCTGTTTCCAAAGTAGATGATTATGACATTGCTGTCAGACAGTTGGCTTTTgaaattaaagggaaagCCACTGACAGACTGAAGTCTGAACAAGAGATTGCCAAAGAAGAGCAGAAACGACTGGAAAAATTAGAGCTTGAGCGTCAACGAAGAATGAGAGGTTTACCTGCTGTGGCCGAGAAACCAAAGCATATATCAGCTGATGACCTTGGTGACAGTTTCACACCTGCTCTCAATGAAAGGGTTATGCTTAGTTATCAAGATGGACCAGTGAGTGATATGGAAGATCATGAAGAGGAGGATCAGATAAGAAGTGATGCTGAAAACAGTGATGAAGAATCTGAGGTAGATGGAggggaagaggaagaagaggaagggGACAATTCTGCTGCtggtgatgataataatgatgatgatgaggaggagGCAGAGGATCAAGATAGTGAAAGCTGTCAAGAAGACAATGGTTCTGACCTTGAATCAGATGTGAGCAATGATGCTATGGAAGATGAGGCTGACTCAGAAATACTAGGAAATCAGCAGCAACAACAGGAAAAAGTGcagaAAGAAAAGACTGAGGCAGAGGTTGTTGAGCTAACAAAAGAAGAACTACCATttacttttaaagCACCAAAATCTTTTCCAGAATTCAAAGAACTCATTAAAGGCTGGTCATTTAAACAACAGTTGACAATAATTGACAGAATCAAGGCATGCCACAATCCCAAGATTACTCCTGCAAATAAACCAAAAATGGAGgtattgtTTACCACTTTGTTGGATTATGTCGGTGAACTCATCCAGATGGGCTCTGAAGGGCTCAAGATGATCGATGAGCTGTCAAGACATCTCTTTGATGTAGCTCAGTACTCTCCGGTCCACTCCGCCAAGTGCATGCAACAGATTGTACAGGATATACACAAGAAATTCTCACAGAACTGCGATAGACAAGGTGGAAAAGGGATGTTCCTGGGTCTTTCTGAGttactttATCTCCGCGTTGTATCAATGTTGTTTTCCACGTCAGACTTCAGACACGCTGTTTGTACACCAACTATGGTTCTGCTTTCCCAGGTTCTTTGCCAGtGTCCTGTACGGTGCATAAGAGATGTACTCAGGGGTCTTTTTGTCTGCGACTTGTTTCATGAGTTCGTATCTCTATCAAAGCGATTCGTTCCTGAGGTTGTCAACTTCCTCTGTGGAATTCTCTTTATGGCTTCCAAGAAGGAAGGCCCTACCCCTCAGCTTGTTCTCCCATTCAAACACTGTAGCAAATGGCGCGACCTTCTCAAACTACAGTCAGATTCAAGTTTTTTGACCGTCAAACCCTTACCGCTGACCACTCTCGGAGAAAGTACTGCAGATGAAAAGACGACGGACGAAACAAGgGTTAACTCAGTACACCATTGCTTGTCCGTTTTGCAAAAATTTGTGGATTTGTATCAGGACTTACCCGcaagttttgagatttttgcTCCGGTGAAAGAACATTTACAAAGaATACCTTTAGATCTTTATCCTGCTTCTGTTCAGGAAATTCACAGCGTTCTTCTAACGAGATTAAATGGACTCTACGCCAAGAGCCTGAATCGTAAACATCTCACATTACAAGCGCGTAAACCGGAACCTATTAAGACATACGAACCAAAGTTTGAGGAGCATTATGAGGTTCGATCAAGGAGAGGTACTGGGAACAAGGCAACGAACGAAAAACAGAAGCTACGATACAAATACAAGAGAGAATTTAAGGGCGCTATACGAGAAATAAGAAAGGATAACCAGTTCCTTGCGAAACAAAAGCTGAAAGAACAGTTAGAGAGGGACACAGAACGTTTGCGTAAAGTCAAGGAAATAGAACATATGCTGTCCAACCAGCAAGCAGAAACCAACGCTATGAAccgtaagaaaagaaaacggggaaAGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04147 all species →	Nop14	Nop14-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007276 all species →	Family	Nucleolar protein 14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23183 all species →	NOP14	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0030692 all species →	Cellular Component	Noc4p-Nop14p complex	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14766	NOP14, UTP2; nucleolar protein 14	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.