Gene detail

Detailed information of PFX29959.1 in Stylophora pistillata

Genomic Location: Spis.scaffold58:547460...561538
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XPC

ATGGCGAGATTGAGGTCAGATTCTGCGAAAACAAAGAAAGAAACTACTAGAAAAACTTCCACGGCCTCAAGAGTTTGTAAAAATGATAAATCGAGTGCGACAGTGGCGAAGAACCCTATATCTTCTAAAGCAAGAGTCCAATCAGTCAAGCGCGAAATAGAACCGCCAGCCGATTCTTTGCAGAAATCAACCAAGAGCAGTGGTAAAGCGACGGATGAAGCTCTTAAAAACGGGCCCCCTCGACATGGCAAGAGGAGAAAGTTCTCATCCCAGGAGCTTAGTGAATCTCCCTCCAAAAAACCCAAAGTGAATTTAGCTGAAGACCAAATGCCAGAGAATGTAAAAAATGCAGACGAAGAGAAAAGTTGTTCAAAGGCAGAGAAACAAAAATCATTATCAAGTTTGAAACAATCATCTAAGAAGAATGAGGTGAAACCAAAGGCCACATCCATTGTGTTGAAACGGGCACACGTACCTCTTGCAAATATTAAAGGGAAGCTCAAGAAAGAAAGTCCAGTGAAACAGAAGCATCTACCTGTACCTACTCCAGAAGATGAACAGAGATCACCTAGAAAACATGGAGTTGTGAGCAAAAGGCTGAAACCAGATTTGAAAGCAATTGTCAAAGAAGAGAATGTTGTTGATGAAATTAAAGCAGATGAATGTGAGGCAGATGATTCAAGTGATGATGAGGAAGTGCAGTGGGAAGATGTTGACGAGGCGGATGTTGTTGATCATCGGCCAGAAGATCAGGAAGCTTCTACCTCACAGGAACATCAGCCAGCTAACAAAAGCAGTGTTGAGATCAGCATTACAGTACCTGGAACAAAAAAGAGAAAAAAAGGATGGAGTCATGAAGATGTTGTGAAATATATTAAAAGAGCTATTAACAGATTTAGGAAAGATGTTTACACCAGTGCTCATAAGGTTCACATTTTGACCCTTATTGCAAATGGATTTTTTAGAAACAACATTTGTAATGAACCACTGCTACAGGCTGTTCTGCTATCTCATGTAGCAAGTGACTTTATATCTCTGAACAAGAGGAAGTGGGATGTGGTGCAACTCACTAACTTCTTGAAATGGTTTCAAAGTGAGTTCTCCAGCACTGATGATGTAAGAACTGGAAACAAAGAGGCAGACAAACAGATTGCCAGATTTCAAAACTTATCCGAGGTGTTTGCGACAATCCTCAGAGCACTTGGATTTCTTACAAGGCTTGTGTATTCTCTTCAGCCCATGTCAGCTAAAGGTGACACAGATGTTAAAACAAGTTCAAAAACTTCAAAGAAAAATACTCACAAAGGGAACAAAGTCTCTCCTCATAATTCTTCGAAAGCCATTTTAAAGAAATTATCAGTGCCAAATAAACAGGAGGAAGCTGCTATGAATTCAAGGAATACCAAATCAGAAAATAAATCCAAGACAACTTTATCTAAATCACTGGCACTCATTTCTGAAAACAGAAGTGAGATCAGCAGTGAGAAATTAAAAAAGGAGAAGGTAGCTAAAAGTTGTAAAAAGGAGGGAGGTGAATCAAGTTATGGTGGAAAGAGAACTCCTAAGACTTCTGATGAAACTAGTAAAGTCCATAAGAATATGAAAAAGGGCAAGGGTAACATCAGTGATAAGCCTGTGAAAAAACTTGTGAAGAAGAGACCTCTACGCAAGAGAGCCAAGATAGATTACTCCCTAAGTGACCATGAGATAGAAAGCAGTGGCGACAAAGAATGGAATGTTCCTTCTAGTGATAGTGAAGAGGAGGAGGAGGAAGACAGAAACTGCATGGAAAAATCCTCCACAAAGAAAAACAAGACTCCTTTGGTCAGGAAAAAAGTGTCCTCTTCAGATAGTTGTAATGACACACCAACAGAGAACAGTAGTGTGTCTTTTGTTGATCTTTTGGATGATGATAGTGATTTTGAAGTTTCTAGCAAACCATTAGTTAAAAGAAAATTGGCTGCTGGCTCATCAGATAAAAAGAAGAAGGCTTTAAAGATTATCAGTTCTGATGATTCTGATGATGAGGGTGTCAACTGGTGGACTGAGGTGTTTCTGCCTTCTGACAAGAAATGGATTTGCGTTCATCTTGAATCTTCAAGTGTCAATCATCCTGAAATGTGTGAGCAGCAGGCAGCCCAACCTATGGTTTATGTTGTGTCATTTGATAATGACAATGCTGTCAAAGACGTCACTAATAGGTATGCATCTTCCTTCATGTCAAAGACCAGGAAGCTTCGCATTGATTCTGATTGGTGGGAAGATACTCTTCTCCCATACAAATCAAAAAACAAGAAAATGGATAAAATGGAAGATTCTCATCTTGAAGATCAACTTCTCGACAAACCTCTGCCTACCAGCATAACGGAGTACAAAAACCATCCTCTTTATGTACTGAAGAGACATCTCCTTAAGTTTGAAGGCTTATACCCAGAAACTGCAGCCATTTTGGGATACTGCCGCGGTGAAGCAGTCTACTCGAGAGAGTGTGTCCATTTGCTCCACACAAGAGAGAAGTGGTTGAATGAGGCTTTGGTTGTGAAGCAAGGGGAAAAACCATACAAGATAGTAAAAGGACGGCCTAAAAGGAACCAACCAATCCATGAGCGAGATTCGGTCACAATTGACTTGTTTGGCAGATGGCAAACAGAGAAATATAAACCGCCGCCAGCGAAAGATGGAAAAGTACCAAGGAATGAGTATGGTAATGTAGAGTTATTCCAGCCTTGTATGCTGCCACCCGGAACGAAGCACATTCAAATTAACGGTATCCAACGGGTGGCGAAGAAACTCGGCATTGATTGTGCTCAGGCTGTGATTGGATTTGATTTTCACTGTGGTTTTAGCCATCCTGTTATTGACGGTGTTGTGGTGTGTGAGGAATATGAGCAAACGTTGCTGGATGCGTGGCATGAAGAAGAACAACAAGCAGAGAAGAAAAAAGCAGAGAAGCGCGAGAAACGTATGCTGGCCAACTGGAAACTTTTGACGAGGTCGTTGTTAATCCGTGAGAGACTCAAGAAAAGATACGACACAGAGGACACTAGCAAAATTGAAACACCAAGCACGAGCCAAGGGGATGAGGTTGTCACAGACGCTTCAGTTTCATGGCCTCTAAACAGACAAGAGGGCAAAACGAGTGTTGCTGGTGAGGGACATTGCCATGTATTTCCTGAAAGCGGACACTCGCAGGATCCTGTCACAGGGGAATGGAGGAGATCATGTTCGTGTGGATTAACTCTTCCGTTTGAAAAAATGTAG

Transcript

rna-Spis5282_mrna

CCCTGTGAAACTGTTATTGTTTGAGCAAATCGGTCGTCTAAAATAACCGAGTTATGGCGAGATTGAGGTCAGATTCtgcgaaaacaaagaaagaaactacTAGAAAAACTTCCACGGCCTCAAGAGTttgtaaaaatgataaatcGAGTGCGACAGTGGCGAAGAACCCTATATCTTCTAAAGCAAGAGTCCAATCAGTCAAGCGCGAAATAGAACCGCCAGCCGATTCTTTGCAGAAATCAACCAAGAGCAGTGGTAAAGCGACGGATGAAGCTCTTAAAAACGggCCCCCTCGACATGGCAAGAGGAGAAAGTTCTCATCCCAGGAGCTTAGTGAATCTCCCTCCAAAAAACCCAAAGTGAATTTAGCTGAAGACCAAATGCCAGAGAATGTAAAAAATGCAGACGAAGAGAAAAGTTGTTCAAAGGcagagaaacaaaaatcattATCAAGTTTGAAACAATCATCTAAGAAGAATGAGGTGAAACCAAAGGCCACATCCATTGTGTTGAAACGGGCACACGTACCTCTTGCAAATATTAAAGGGAAGCTCAAGAAAGAAAGTCCAGTGAAACAGAAGCATCTACCTGTACCTACTCCAGAAGATGAACAGAGATCACCTAGAAAACATGGAGTTGTGAGCAAAAGGCTGAAACCAGATTTGAAAGCAATTGTCAAAGAAGAGAATGTTGTTGATGAAATTAAAGCAGATGAATGTGAGGCAGATGATTCAAGTGATGATGAGGAAGTGCAGTGGGAAGATGTTGACGAGGCGGATGTTGTTGATCATCGGCCAGAAGATCAGGAAGCTTCTACCTCACAGGAACATCAGCCAGCTAACAAAAGCAGTGTTGAGATCAGCATTACAGTACCTggaacaaaaaagagaaaaaaaggatgGAGTCATGAAGATGTTGtgaaatatattaaaagagcTATTAACAGATTTAGGAAAGATGTTTACACCAGTGCTCATAAGGTTCACATTTTGACCCTTATTGCAAATGGATTTTTTAGAAACAACATTTGTAATGAACCACTGCTACAGGCTGTTCTGCTATCTCATGTAGCAAGTGACTTTATATCTCTGAACAAGAGGAAGTGGGATGTGGTGCAACTCACTAACTTCTTGAAATGGTTTCAAAGTGAGTTCTCCAGCACTGATGATGTAAGAACTGGAAACAAAGAGGCAGACAAACAGATTGCCAGATTTCAAAACTTATCCGAGGTGTTTGCGACAATCCTCAGAGCACTTGGATTTCTTACAAGGCTTGTGTATTCTCTTCagCCCATGTCAGCTAAAGGTGACACAGATGTTAAAACAAGTTCAAAAacttcaaagaaaaatactCACAAAGGGAACAAAGTCTCTCCTCATAATTCTTCgaaagccattttaaagaaattatcagtGCCAAATAAACAGGAGGAAGCTGCTATGAATTCAAGGAATACCAAATCAGAAAATAAATCCAAGACAACTTTATCTAAATCACTGGCACTCATTTCTGAAAACAGAAGTGAGATCAGCagtgagaaattaaaaaaggagaaggTAGCTAAAAGTTGTAAAAAGGAGGGAGGTGAATCAAGTTATGGTGGAAAGAGAACTCCTAAGACTTCTGATGAAACTAGTAAAGTCCATAAGAATATGAAAAAGGGCAAGGGTAACATCAGTGATAAGCCTGTGAAAAAACTTGTGAAGAAGAGACCTCTACGCAAGAGAGCCAAGATAGATTACTCCCTAAGTGACCATGAGATAGAAAGCAGTGGCGACAAAGAATGGAATGTTCCTTCTAGTGATAgtgaagaggaggaggaggaagacaGAAACTGCATGGAAAAATCCTccacaaagaaaaacaagactcCTTTGGTCAGGAAAAAAGTGTCCTCTTCAGATAGTTGTAATGACACACCAACAGAGAACAGTAGTGTGTCTTTTGTTGATCTTTTGGATGATGATAGTGATTTTGAAGTTTCTAGCAAACCattagttaaaagaaaattggcTGCTGGCTCATCAGATAAAAAGAAGAAGGCTTTAAAGATTATCAGTTCTGATGATTCTGATGATGAGGGTGTCAACTGGTGGACTGAGGTGTTTCTGCCTTCTGACAAGAAATGGATTTGCGTTCATCTTGAATCTTCAAGTGTCAATCATCCTGAAATGTGTGAGCAGCAGGCAGCCCAACCTATGGTTTATGTTGTGTCATTTGATAATGACAATGCTGTCAAAGACGTCACTAATAGGTATGCATCTTCCTTCATGTCAAAGACCAGGAAGCTTCGCATTGATTCTGATTGGTGGGAAGATACTCTTCTCCCATACAAATCAAAAAACAAGAAAATGGATAAAATGGAAGATTCTCATCTTGAAGATCAACTTCTCGACAAACCTCTGCCTACCAGCATAACGGAGTACAAAAACCATCCTCTtTATGTACTGAAGAGACATCTCCTTAAGTTTGAAGGCTTATACCCAGAAACTGCAGCCATTTTGGGATACTGCCGCGGTGAAGCAGTCTACTCGAGAGAGTGTGTCCATTTGCTCCACACAAGAGAGAAGTGGTTGAATGAGGCTTTGGTTGTGAAGCAAGGGGAAAAACCATACAAGATAGTAAAAGGACGGCCTAAAAGGAACCAACCAATCCATGAGCGAGATTCGGTCACAATTGACTTGTTTGGCAGATGGCAAACAGAGAAATATAAACCGCCGCCAGCGAAAGATGGAAAAGTACCAAGGAATGAGTATGGTAATGTAGAGTTATTCCAGCCTTGTATGCTGCCACCCGGAACGAAGCACATTCAAATTAACGGTATCCAACGGGTGGCGAAGAAACTCGGCATTGATTGTGCTCAGGCTGTGATTGGATTTGATTTTCACTGTGGTTTTAGCCATCCTGTTATTGACGGTGTTGTGGTGTGTGAGGAATATGAGCAAACGTTGCTGGATGCGTGGCATGAAGAAGAACAACAAGCAGAGAAGAAAAAAGCAGAGAAGCGCGAGAAACGTATGCTGGCCAACTGGAAACTTTTGACGAGGTCGTTGTTAATCCGTGAGAGACTCAAGAAAAGATACGACACAGAGGACACTAGCAAAATTGAAACACCAAGCACGAGCCAAGGGGATGAGGTTGTCACAGACGCTTCAGTTTCATGGCCTCTAAACAGACAAGAGGGCAAAACGAGTGTTGCTGGTGAGGGACATTGCCATGTATTTCCTGAAAGCGGACACTCGCAGGATCCTGTCACAGGGGAATGGAGGAGATCATGTTCGTGTGGATTAACTCTTCCGTTTGAAAAAATGTAGACAGTAAAAGCTAACtgcgtc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10405 all species →	BHD_3	Rad4 beta-hairpin domain 3	Domain	Interproscan
PF10403 all species →	BHD_1	Rad4 beta-hairpin domain 1	Domain	Interproscan
PF10404 all species →	BHD_2	Rad4 beta-hairpin domain 2	Domain	Interproscan
PF03835 all species →	Rad4	Rad4 transglutaminase-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018328 all species →	Domain	Rad4 beta-hairpin domain 3	Interproscan
IPR042488 all species →	Homologous_superfamily	Rad4, beta-hairpin domain 3 superfamily	Interproscan
IPR018326 all species →	Domain	Rad4 beta-hairpin domain 1	Interproscan
IPR018026 all species →	Family	DNA repair protein Rad4-like	Interproscan
IPR018327 all species →	Domain	Rad4 beta-hairpin domain 2	Interproscan
IPR018325 all species →	Domain	Rad4/PNGase transglutaminase-like fold	Interproscan
IPR036985 all species →	Homologous_superfamily	Transglutaminase-like superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR004583 all species →	Family	DNA repair protein Rad4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12135 all species →	DNA REPAIR PROTEIN XP-C / RAD4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000111 all species →	Cellular Component	nucleotide-excision repair factor 2 complex	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0071942 all species →	Cellular Component	XPC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10838	XPC; xeroderma pigmentosum group C-complementing protein	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.