Gene detail

Detailed information of PFX29969.1 in Stylophora pistillata

Genomic Location: Spis.scaffold57:311138...320969
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis5208_mrna

GGCGGACTGATTGTCATGTCTCAGGTACCTTCGAAGTCAAGGGGTGACGGAAGCGATTTAGAAAACCAGATTATTTTACGTGTTCCTCAGGCATATGCCTCTCCATTGCGCCTGGCAATTCAAAACGGTTCACTGAAGGATAGACTTTCAATCGAACTTCAAGCTGACTTCAGACATGCAACAGTCAGATTTGATGGAGCAGCCCTATCAGCTAAATTAGTGGATCTGCCATGTATTATAGAATCTCACAAGACAGTGGACAATAGGAGCCTTTACAAGACAGCAGACATCTGTCAGATGTTAGTTTGTTGTGAGGATGATAACCAAACAGATGATGAAGACATTTCTCCCAAGAAGGAGTCTAAGAGATTTATTTGGAATCACGGAATTACTGGTCCACTGAAGAATGTTCGCAAACGAAGATTTCgaaaaactgcaaagaaaaagattgtgGAGTCACCAGAAGTTGAAAAGGAGGTCAAGCGTTTGTTAAGGACTGATTTGAGTGCCTCTCATGTGAGTTTTGAGGTGTTACAAGACGAAGAGAAACAAGATGAGAGTTTTGTATCAGATGCTGATTTACTGAACACCTCAATGCCTTCACCTCTATCTTTAACACAAACTGAGGAGCAAGATGGAGGTAGTGAAGATGAGGACAGAAATGAACTGTTTGCCATTCTCCAGGAAGCCAGTAGTGATGAGGAGCCAGAAGGTGATGAGGATGCTGTTGATACACAGGAAGATGACGCAGATGATTTAAATGTTAATGTAGACATTGAAGATGATACAACTGAATTAAATGTTGGTGAAAACAATTCTAAGTCCAAGATACAATCTGCAAGAGAGAAGCTTATTGAGATCAGGGCAACTATAACAGAGCAGGAAACCAGGGTGAAAGAAGCTTCCAACTTATTCCTCAAGCAACGATTTGAGAAAGTTCTCGAAGAACTAAAATCTAAGGAGAAGGATCAAGAGCAGGAGCTTCAAAGATTGGAGAgccaagtttaaaattttatggtCAGGCTATAAAGGAGTAAGATTTCCGCATCATTTTTGTGAAGTGTACCGTATTTAGTCCATAACAACAGTGACCACTGGCCTTTATGAATCCAAAGGACCTCTAACTTAAGTGGATATTTGTCATGGAAAAGGACTGAATTATGTACAGTAACTTGGAAAAGGATACAGGAACAGTTAGACCAAGCAATGTTGGCCAAAACACTCTCTTTGATTCCAGTAAAAGCCTGCATTACTCAAATGATACAttagagaaattaaatgttCTATAAAGACACCAGTCATAAATTGCATCATTGTTATATCACAGTGACTGTGGGATTCAGGATGTAATTTTCAAGAGAGAAATAAAGTTAAGGTGGCAATTTCAGtaaataatgatgatagtaaCCACTTGAGCAAGATAATGTGATCACTCTATTGCCTATTAGATACATTTGCATAACACTCTCTTTCCATTagttattttacttatttattcaaCCTGGTTACGCTTTTTAGTTCCCATTTCCCCATGTAATCAATGGTTTTGTCTTGCAAGTCTTCTGTGCCTGTTTGGCAGGTTCTTTGTGAGATGTACaagaaaaacagcattttttaaGACCATCAGGTGtgattaatgaaataaatgaatgacaATTGCATTGCCTgctttctgaatatttttgaaagttttgcttcctcttttgatcaaaatttaactttttggaGCTCAAACTGAAAATGGAATATGCTAATGAATGACAGGCCCTAAATGAATGGCTATTGTTCTCAATATATTTGCTAAGGTGCTGGCTGGGAAAATAagcttaacaatcaagagctgttGTAGTTTTTGATCATTTCCATCATCCTGGTGATTCAGGGGGTCATACTGTACAGAGAAATgagtcactcttagggtttaaagAGTTTATGCTGATACACTTGTCAAGTATTGTGTTCCAAGGATTTCATATGAATTCAAAATAGagttctcagtgttgtgaaatACATCTTGACCTCTTTTGTCTTGAAAGTAAACCACAGTGCCAACTGGCCCAATCTTGTCTATATTTTATACTGAATTTTCCTATATACTTGTAGTAGTATTTCCCTTACCCTCCATTTTCAACTACCTTGATTCTATTCTAATTAATCCATGCACTGTCTCAAAAGACCTTTTTACTTTCATTACTACTAAGAATGACACTTTCCTGAACACATTGCTTTATTTTGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04658 all species →	TAFII55_N	TAFII55 protein conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006751 all species →	Domain	TAFII55 protein, conserved region	Interproscan
IPR037817 all species →	Family	Transcription initiation factor TFIID subunit 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12228 all species →	TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0051123 all species →	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03132	TAF7; transcription initiation factor TFIID subunit 7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.