Gene detail

Detailed information of PFX29983.1 in Stylophora pistillata

Genomic Location: Spis.scaffold57:430087...445590
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

CCDC66

ATGCTAAAAGTCAACACTAACAAGGGCAAGCTCGATATAGTTCTGAATGAAGAGAACTTCTTTAAAACAGGACTAAAGGAAAGAGGTGCTAAGGGGAGACAAAGCTCAAAAGGTTTTTCAGGAAGAACATCTCAAGCTCGCACTCTCCCTCTGAAGACAAACAGCTCTAAAGAAGATGGCAAAACCAAATCCTCATTCAAGCCACAGAAAAATGCTGTTAGAGAAGCCAAACTAACAAAAAGTGAAAGTATAAGAAAAGAAGAACCTTCTGCAGTTGCTAGCTATTTGACAAAGGACCAGTTGTCACGAATTCTGTCATCTCTGAAATCTTCAGACACTCAACATGTGCCTGTTGCAGATCTCGAGAATGTATACACAGGGTCAGGGGAAATTGCTGTTGAACAAATTGCAGTTCATCAGGCATTGATGAGGGACTCTGAAAAAAGGAGAGTAGAACAGAAACCAGAATCCAAAATCAAAGACGATATTTCTGAAAACCAGGGACAGGTCAATACCCTCAGCAAAAATTATCTGTGGAAGAAGGAGTTAGATGAGCAAGTAGCCCTTAAGCAGGATTTAAAAGCTAGAAGAAAGTTACTGGATAAGGATGATGAATTTAAAGAATATAATCCATGGGGCAGACCAGGAGGAGGTGCTCCAGTAAGAACTCAATCTGGAAATATTGTGGCTGACTACAAGAAAATGCATCAGGACTTGACCTCCAAGAATGAAGACAATGTTGTATTAGCTTCATTGCTTGACAGTGGCATGAAGACAAAGACGCCAGCAGACAGCTATAATGCGCATGACCTTATCACCACAGCTACTCCTGTGGCCATGAGGAGTTCATTTGCCATTGGTGCTCCCGGAGTTGTACAGTATGAAGAATATCAGTCTAAAATTGATGGAAAGAAAAAGTGGCTCCAAGATCTTGAACAACAGATCAAAGAAAAGAAAGAGAGACAGGCTCAGGAAAAGCAGCAGCAAATGCAGAAGGAAGTCAGGGAAGAAAGGTGGAAACATACAGCAGTGTTATCAAATGAGTCCCCTCCGGCAGCTACTGCTTTTGAAGTAAATAATACTACAACTGCCACAACACGGCAATCGCATGTTGATATTGAAGCAGCTTCTGCTACTGCACAAGACAGTAGTTTCAGGGCTGGCAATCCTCATGGCCGTGGTCAAGGATTGCAGAGTTTAGTTGAGGTGAACCACGATGAAATGGAGAGAAAGAGGCTGAAAACACTTGAGCATCAGCGTGCAATAAAAGAACAAGTAGAAGAAAAAAGGCGCCTTAAACAGCAAGAAAAAGAAAGGAGACTGAAAGACGAGGCTGAGAAAGAAAGGACGCTGATGATGGAGCGAGAAAGAATGAAAAAACAGTATGAAGAGGAGCTAAAACAGCGAGAGGAAAAAGAGAATGAAGCAAAGCGTCGAGCAGAGGCGTTACAATTAAGTATTTTACAAGCATACGAGACAGCTCAACAGGAAAAAGCTACCAAAAGAATCCAACAATTGGAAATGCGCGGTCACGATGTGTCTGGATTGAAAACTCCTGGCTTGGCCTTGAGGCAACAACACTCTTCTACAGATACTTCTTATCTTGATACCGCATCTGTTTCACCTAGACCAGAACACAGCCAGTTAAGCCCGCAACACAAAGAATTACCTGCAAAGACGAATGACATAGTCATTGCTTCGACAGATCAGAAAAATGCTTCATTTGAATCGGAGTTTAGACAATTGAGTTTAAACGCCTCATTAGAATCAGAATGGATCAGTTCATCTCCTGTTACGTTTGTACCGAACAATCCTCAGGCAAAGACTCAAACGAAAAAAACGTCTCCGTCACGTGCTAAAGGAGCGGCTCACGTCACTACGCGGTCACAATCAGAAAGAGGACAGAGGAAAAAACAGACACTTAAGCCACGGAACAAGCGACAGGGTTCAGTAGAAACTATAGCAGGTGGACAGGAGGATGGTGCAGCAGCAGTAGAGCTAGCTAGTCCTATGGAGGATGCCTTTATGATACCTTACACCCGCACTGCCAGTGCTACATTCCATCCAGTTCCATACACTCCACCCTCGGCACAGGCTGATCATGTTAGTTCTCTTAAAGATCAAAACTCTATGAACAGAAATCAACAAACAGACAAGAAAGCTCAACCTGCCGTGACTTCTCGAACAACAACGAACCAAGCTGTCCTGGGTCGGCAGACTGTTAAAAATGAAAAGATCGGAAAAAAATCGTCAGTTGCCCCTAGAAGTAGACATGAAATGGTTCAACAACATTCTATAGAAGCCGGAAAGCGTGATGTCAAAGGACACCAAACAAAAATACAAAACGAAAATGCCGGCATTGATCCAATTCAGGCCTCTCCAGACCGTGTACCGACAGCGCGTCAAGAGATGATTCTACAGCAGCTTGCAACTCTGCGGCAGGGTTTAATGATGAAAGAAAGAGAGCTCCATCACAGTGCAATTTGA

Transcript

rna-Spis5218_mrna

CTGATATGATGGCGCCTTCGCGACTCCGCGACCACAAGACACTGTACGAAgcgaaaccaaaacaaacactCTGATCATTTTGGAATATCAAACTGGATTGAGAGATGCTAAAAGTCAACACTAACAAGGGCAAGCTCGATATAGTTCTGAATGAAGAGAACTTCTTTAAAACAGGACTAAAGGAAAGAGGTGCTAAGgggaGACAAAGCTCAAAAGGTTTTTCAGGAAGAACATCTCAAGCTCGCACTCTCCCTCTGAAGACAAACAGCTCTAAAGAAGATGGCAAAACCAAATCCTCATTCAAGCCACAGAAAAATGCTGTTAGAGAAGCCAAACTAACAAAAAGTGAAAGTATAAGAAAAGAAGAACCTTCTGCAGTTGCTAGCTATTTGACAAAGGACCAGTTGTCACGAATTCTGTCATCTCTGAAATCTTCAGACACTCAACATGTGCCTGTTGCAGATCTCGAGAATGTATACACAGGGTCAGGGGAAATTGCTGTTGAACAAATTGCAGTTCATCAGGCATTGATGAGGGACTCTGAAAAAAGGAGAGTAGAACAGAAACCAGAATCCAAAATCAAAGACGATATTTCTGAAAACCAGGGACAGGTCAATACCCTCAGCAAAAATTATCTGTGGAAGAAGGAGTTAGATGAGCAAGTAGCCCTTAAGCAGGATTTAAAAGCTAGAAGAAAGTTACTGGATAAGGATGAtgaatttaaagaatataatcCATGGGGCAGACCAGGAGGAGGTGCTCCAGTAAGAACTCAATCTGGAAATATTGTGGCTGACTACAAGAAAATGCATCAGGACTTGACCTCCAAGAATGAAGACAATGTTGTATTAGCTTCATTGCTTGACAGTGGCATGAAGACAAAGACGCCAGCAGACAGCTATAATGCGCATGACCTTATCACCACAGCTACTCCTGTGGCCATGAGGAGTTCATTTGCCATTGGTGCTCCCGGAGTTgtacagtatgaagaatatcaGTCTAAAATTGATGGAAAGAAAAAGTGGCTCCAAGATCTTGAACAAcagatcaaagaaaagaaagagagacagGCTCAGGAAAAGCAGCAGCAAATGCAGAAGGAAGTCAGGGAAGAAAGGTGGAAACATACAGCAGTGTTATCAAATGAGTCCCCTCCGGCAGCTACTGCTTTTGAAGTAAATAATACTACAACTGCCACAACACGGCAATCGCATGTTGATATTGAAGCAGCTTCTGCTACTGCACAAGACAGTAGTTTCAGGGCTGGCAATCCTCATGGCCGTGGTCAAGGATTGCAGAGTTTAGTTGAGGTGAACCACGATGAAATGGAGAGAAAGAGGCTGAAAACACTTGAGCATCAGCGTGCAATAAAAGAACAAGTAGAAGAAAAAAGGCGCCTTAaacagcaagaaaaagaaaggagactGAAAGACGAGGCTGAGAAAGAAAGGACGCTGATGATGGAGcgagaaagaatgaaaaaacagTATGAAGAGGAGCTAAAACAGCGAGAGGAAAAAGAGAATGAAGCAAAGCGTCGAGCAGAGGCGTTACAATTAAGTATTTTACAAGCATACGAGACAGCTCAACAGGAAAAAGCTACCAAAAGAATCCAACAATTGGAAATGCGCGGTCACGATGTGTCTGGATTGAAAACTCCTGGCTTGGCCTTGAGGCAACAACACTCTTCTACAGATACTTCTTATCTTGATACCGCATCTGTTTCACCTAGACCAGAACACAGCCAGTTAAGCCCGCAACACAAAGAATTACCTGCAAAGACGAATGACATAGTCATTGCTTCGACAGATCAGAAAAATGCTTCATTTGAATCGGAGTTTAGACAATTGAGTTTAAACGCCTCATTAGAATCAGAATGGATCAGTTCATCTCCTGTTACGTTTGTACCGAACAATCCTCAGGCAAAGACTCAAACGAAAAAAACGTCTCCGTCACGTGCTAAAGGAGCGGCTCACGTCACTACGCGGTCACAATCAGAAAGAGGACAGAGGAAAAAACAGACACTTAAGCCACGGAACAAGCGACAGGGTTCAGTAGAAACTATAGCAGGTGGACAGGAGGATGGTGCAGCAGCAGTAGAGCTAGCTAGTCCTATGGAGGATGCCTTTATGATACCTTACACCCGCACTGCCAGTGCTACATTCCATCCAGTTCCATACACTCCACCCTCGGCACAGGCTGATCATGTTAGTTCTCTTAAAGATCAAAACTCTATGAACAGAAATCAACAAACAGACAAGAAAGCTCAACCTGCCGTGACTTCTCGAACAACAACGAACCAAGCTGTCCTGGGTCGGCAGactgttaaaaatgaaaagatcgGAAAAAAATCGTCAGTTGCCCCTAGAAGTAGACATGAAATGGTTCAACAACATTCTATAGAAGCCGGAAAGCGTGATGTCAAAGGAcaccaaacaaaaatacaaaacgaaAATGCCGGCATTGATCCAATTCAGGCCTCTCCAGACCGTGTACCGACAGCGCGTCAAGAGATGATTCTACAGCAGCTTGCAACTCTGCGGCAGGGTTTAATGATGAAAGAAAGAGAGCTCCATCACAGTGCAATTTGATGGGCAGCCTAATCAAGAAAAGCAAATTCAACCAGTCTGTGTTTCGCATACAGAGCCCGGAGTCAAGGTCATTCTCTCTCATAGAGGATTAGAACTGAGAATTAATGATAACAGTGCAGGCCGGATTGTTCTAGTCCCTTAAAACCGAAGCAGGCATCAGAGAAAGCGCGTAGTCCTTGTTATAAATAAAATGGTTGTTTTTAACTTAAAGTGGTATATAATTCGATATTTAAAAGTTGTATATAGTATGTCACCTGTATACAAAAAGTGCAGAGAACTGTAATAAAAGATAAACCTGTCCGCCTCAGATGAAAATTGGAACTTTCTCTACTGAAGTCAATGGTGGCCCATTCGGCGATGAGGCCTACTGACGCTGCTCCGGCGGTGATTATAAACATGTTGTTGTGAAGGTTTACTATAGGTTATCCATCTTAGGAACAGAGTCCTGTTTTAATACACCAACGTTGATCTGAGCTACTGAAACACAATTTTCTAGATATTGAAATTTAACACATCCTCTTCCGAAACAGACACTATGGAAAGCTTACCGCGAGAGATGATTATTCCTCacgtaaagaaaaattttcctaaGCTCGATCGGCTGTCCGCGAGAAAGCAGAACGAAGCACCGCATATTTTCAAAAACTACTTTCCTTTCACCCCGTTTCTTATAACGTTTTCAGTGAGTAGATGGTGCATTAAGTTACTTCCCTTTTCAACTGGATGGTCTGGTGGCTATAAGGTGAGCGTATTAGTGGCTCAGAACAGGTTGAGAACACGTTAATCAAAGATGCGTCAGAGGACCTTAAATCTTTATCGCTGAATATGGAAAAATCGTTCAGAGAAAAGTGTTGGAGGGACTAAGAACCACCTTGAAGTTCAAACAAACGAATATCAAGAAATTTGTACAAGAACGAGGACAGTCAAGGTTTAGTTTATATTAACTTTAGTTCCAATTCACGCCTTGTCATCTGTAAATTGATCGACTCTGGCATCTCTTTATCGTCACTCTCACCAAATGTGAAGGTGATCACAGGCCACCAAAAACGTAACTTTATTCTAATTATACtcttacatttaatttaattcatatGACAGACAAGGTAATCAGTggttaggaaaataaaaatcgaaaaatg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15236 all species →	CCDC66	Coiled-coil domain-containing protein 66	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039183 all species →	Family	Coiled-coil domain-containing protein 66	Interproscan
IPR040467 all species →	Domain	CCDC66 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22736 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25397	CCDC66; coiled-coil domain-containing protein 66	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.