Gene detail

Detailed information of PFX29997.1 in Stylophora pistillata

Genomic Location: Spis.scaffold57:348155...360666
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis5211_mrna

AAATGTCGTTGTTCGGTGCTGTCAGTCAACCCTCCACAGGTGTGGGGTTTTCTTTTGGAACTCCTTCTAGCACAGCTATAGGGTTTAGTACCTTTGGATCGAGTCAACAGGGAAATACGGCAAATAAGCCATTATTTGGCACAACGAACTTTGGTACCAATACTGCTGCCAGCTTTGGTGCAGTACCTACAACGACAGGTTCAGTGTTTAGTTTCGGTGCAAAGACTACCGCCTCTTCTACTATAGGTTTTGGATCAGCAGTCACTTCATCTGCTCCATCTTTAGGAGGGACTCTTACAACTGGTTTTGGAACAACACAAGGACTTGGCTCTACAGCCTTTGGTCAACCTGCAACAGGGTTATTTTCACAGCAGAGTAACCAGCCAGTACCTAACCAACAAGTGGCACCCTTAGCCCAGCTGGCTGTTGCTTTATCTCAGCCTCAGATATATGGTGACGAAAGAGATGGCATTATTGCCAAGTTGAACCAGTTACAAGCATATTGGGGAACTGGAAAGGGGTTTTACAACCAACAAAGTGCAGTTGACTTCACACCACAAAATCCATTTTGTCACTTTAAGGTTGTAGGCTACAGTCGTCTCCCTATGGCCTGTAATGAGGATGGCCATTTatctcttgaaataaagaagaaagaaagtgatGTTCGTGCTATACAGCAAGGGATTGTAGATGGACTTCACAAGTGTCTTGGAAGTAAACCTACCATTATGGTTTGTATTGATGGCATAAAACCTCTGCCAGATGACAGGTCTGAAGTGGTGATGTATGTTGTCGAGAGACATCCAAATGGTTCCTCTAGAACTATACCAGCCACAGATGTCTTTTCACATCTCAATCAGGCCACCATTAAGGCTCAGCTGAATAGCCTTGGAGTTGTCAATGTGTTATTGAAAACAAGCCTGTCCCCATCTCAACTGCAACAATACCTGGACAACCCTCCTGTTGGAATAGACTCCTTGCTGTGGGAGCAAGCGAAAAAGGACAATCCAGATCCTGAAAGGTTGATTCCGATGGCAATCACAGGATTTAGTGAACTGAAAAAACGCCAAAAGCTTCAAGAACAGGAAACGTTACAGCATCACAAGCGTCTCTCTcttATACGCGAAGAGATTGCAGAGTTACAACATAATCACGGCACAACCATGGCTAAACTGgcacaatttaaaagaaaacatctagAATTAAGTCACCGCATACTGGAGgTTATGATAAAACAGGAATGTCTTCGGAAGAGTGGCTACTCAGTACAGGCAGACGAGGAACAGCTCAGAGTACAACTTGAATACCTGCAGGCGGAGTTGAATGCACCTTCTCAATTCAAGGCTCGTTTAAATGAGATGATGTCACAGATCCGCTTACGGCAGAGCCAAGTTGGAGAAAGACTGGCGCGAGCGGACGGCAGATATGTTGTGGAAGGCGCTGTTCAGGACCAACTTAAACAACATCTTGAGCGTCAACAGTTAGGCCTGATGCACCTTATAACCATCATAAAAGATGATCTTCAGGACTTGGCCACCACTGAACGAGGACTCAGCGAGCTCCCTTCAACAAGGACATGATCAACACTTACCTAAGTTAACTAAAACATAACTTTTTGACCTTCGGGACTCGTATGCCCGCAACCTTCCTTCAACAAGGACATAATAATTAGTGTTAACTGCTCTTGTTTACGAGTGCACTATCACAGAGAATTTCACATTCCCATACATGTCTTGTCTTCTTTGACGTTAGTCACTACAGTTATTTGTACTGTTAGGCTATACGCGTCGTTATGTTAATAGTGTGGCTAAATGCAATTAGCAGGTATATTGTATTAAGCTACCAATATCTCTAATTCCTTAGGCTTTACCAATTGTCAGTGAGTTTATGCTCATATTGTGACATCTTTTATAGTACAAAAACCTTACTTCTAAGACTTTAAGTTTCGTGCCCGTATCTTCCAAGTTAATCTGGTGTTGCCGATACCATTAAGTAGTGCCCCCAGGCTTGAATGCTCACAAGTGTTCTCGTATTTGACAGTAGAGTGTTGAGGAAAATGCTTCTCTTACAATCACGCTTCTcacttttcttcaattttcttgagACAGTAGTAGCGTAACTTTGTTGCTGCAGGCGCCTGTCGTCTAGTCTGTTCTTGACCCTTTTGACATCGTCCAAATAAAGCGATCAACTGCGTGAATATGTTTGCTACCAAGAGTAACTTCAAGGTCCACTGGCACCACAAGGCACTAACCTCAAGTactggtttttattttcattagtgCTTTTGAGTTACTATGGCGCATATCTTGTTGATAAATACTCACTTCTCTGTCAATCCAGGGGAAATTGttctatttaaacaaagttattTTAACGTAACTTTTCAAAATGCTAAAGTTCTTCCTTCAATAGTCTGAGTTTGAAATTCATCTTATCTTTAGTTTGGATATTCCTTACAGATTGGATAAATTACAACTCAACTAGTCGCTCTTTTGCGATTGCAGTGACTTGAATCCATTCTTCCtttgattcaaatttttcttctgaaGTGAAAGATAAGTATGCATGCCAATTTTTATATCAAGGTCCCCCAAACAACATTTGGGTTTAAGTTGTTGAATATAAAATCAGCACTAATGAGAAGAGCACATCTTTCTTTGGAAACAATTGAGTTAGCTGGGCTATGCGTGCAGCCATGCATGGTTAGTGCAAGAAGAAAAGGCTTTTGTGTTGTCGATTGACAATGCTCAAGGCAAGGCCATCTATTTTTACTAACACACAACAGCTACTATTTGTTTAATAATTCTTATAGTAAACTGAAGAGAAAATACCATATACTGGAATTATTTCGAGAATGAAAGTTCAATAAACAGTGACAAGTATGTTTATGCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18437 all species →	Nup54_C	Nup54 C-terminal interacting domain	Domain	Interproscan
PF13874 all species →	Nup54	Nucleoporin complex subunit 54	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024864 all species →	Family	Nucleoporin Nup54/Nup57/Nup44	Interproscan
IPR040985 all species →	Domain	Nup54, C-terminal interacting domain	Interproscan
IPR025712 all species →	Domain	Nucleoporin Nup54, alpha-helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13000 all species →	NUCLEOPORIN P54	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006607 all species →	Biological Process	NLS-bearing protein import into nucleus	Interproscan
GO:0006999 all species →	Biological Process	nuclear pore organization	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0036228 all species →	Biological Process	protein localization to nuclear inner membrane	Interproscan
GO:0044613 all species →	Cellular Component	nuclear pore central transport channel	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14308	NUP54, NUP57; nuclear pore complex protein Nup54	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.