Gene detail

Detailed information of PFX30041.1 in Stylophora pistillata

Genomic Location: Spis.scaffold56:516741...544933
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis5153_mrna

AGCTGCTCGAAACTTACTGAAGGGTGTTGATCGTCTTCTAtggatttttaattttcttattataGGTTGTATACAGAGATTGTATATCTCCCTTTTCCGCCGAATGAATTGTTGAGCTGATACAGTGAATGAGTGGTAAAAGCCATTTTCGTCAGAGTGGGGGAAAGTATTGACCTTGTGGTCAACTCCCTTGATATCCGTTTGGCTGTGGTGGTAGAGGAACAGGAAAACACAAGCTGTGAGCCATTCAGCTGATtaatttgtctgatttttatACGTACACGTTTCGAAGAATTCTCCCCATTTCTTCTCTGAATTTGGCGAGACTACGCGTCTTGAAGAAAGCAATGGCTACAGGGGCCTTAGAACTTTCCCATGTGAATCGGGAAAATATTACAGTAGCACATCCAGATTTTCCAAGGCTGCAATCAGAAGAAAGTGCTGGTATTAGAAGACCTCCTGGTATAAAGAAATCTATATCATGGGGAAACCGATCTGATTATACTCGGTCATTGTCTCCACAATCCTTAACTGTAGCTGTATTTCTAGTGGAGAAGTCAGGCCGTCTGTTAAACTTGGAGGAGGGAAGAAACACTGAGGCAGGGACAATTAATACCATCATGTCAGAAAATCTTTCTCTTCCCCCTAGTGCCTCTCAGGTGTTTTGTGTGTGGCTTATTTCTCCTCTTTTACAACTTCAGTTGAAATCTCATCACAGGCCATTCCGTCTACGTCAGGTATGGCCAGAATTACTCAAGAAATTTACAAACACACCTGATGAAGTTTGCGAGAAAGatgAACCAATTCTGTGTTATCAAAGGAGTTCATTTTTTCCTCTTAAAGAGGAACGGAGAATTAAAGATGACAGAGTTCTTAGAAGATTATTTGAAGAGGCCAAACACAATGTTCTTTGTGGTAATTACCCTATCAGTTCCAAAGATGCCCTCACATTGGGAGGAATGCTAGCTTATATAGACAATGGCAAATATGATAAAGAAGAACATGCTCCTGGCTGTTTCAAGAACAAGCTGACAGACTATTTACCTGCATTTGTCTGCAAATCCAGTTGGCCATTCCTTGGTCGATCACCTAATTCAACTATTGAGCAAAAACTCCTCCAGGAATATCAAAATGTCTCTCAGCAAGTTAAAGATGTCAAAGCCTGCCACAAAATGTTCTTGGAGTACTGctggaatttttcattttatggGAGTGTGTTCTTCCGTGGCCAAATTGAACGACCCACATCCTCACTTCTGTCAAACATCCTAGGGAATTCTGACCTTCCCGTTAGAGTTGCTATCAACAGAGAAGGTGTCCATGTGATTGATGACAATAAAAATGATATACTTCTGAGCTTAGCATTTGAGGAGTTATCTTGGGACTACACGCCTGCCCCTGCACATGAGCCTGGGTGTTTGGACACCTTTTGGTTAGAGTTTGATGCTCCTGATGGAAGCAGTGATCCAGAAGAAGCAGTGCAAAGGTTACAGATCTTCTCCAGACAGGCAGAAATGATGGATGCCATGGTAGAGTCTTGTGTTCTTTGTGATGAACCTGGGCCACATGGAACACTGGCTGGTAAAGTAAGATGTAGAGTGGACCGGCTCAGTCTCTCGACTCTTGaagGGACCTTGGACAGAAAGAAGGGGTCTAACAAGTCTTTCACTATGTCCAACCCCTTCAGGAAAAGGCATTCAACAGGTCATTAAACAGACGGAGTGTATATCTTAGTTATGATGATCATCCCTCCAGTTGATAAAATGACGATATGGAGGCTGTCGTCAAAACAGTAGGATATAAGGACATGAAAGTTTTGTATAGAAGTCTATAATCATAACAAGTTTAAGTCAAAGGTGTAAATAGTTTCTTCTGTATGGATGCTACAAGACTAAGATTTAATGTTTTTCTGTGTCACTATGGTGACTCTAATATTTGGTTAGTGGCTTGCGAAGTAGGGGCTGGATAACCTTCAGTGATCTTATTTCGAGAAGTTGATCTTGCACCATATCATAGTCAACTCaagtttcaattattttgttttgccgtaCTCATCTGTCGCTATAAACTTTTGTGACTTTATGGGAAAACagcagtttgtttttttaaggccATATTGAAGCGACTCTCGCTGCCGGTGAATTTTGCTATGTTCTCTCGGTAGATTGTCCTCACCTGTCCAAGAAAACTTTAGTGAGAGTAACATTGATCTGAAACCCTTAACAGTTAGAAGTTAACGTGTTGTAGCTTTTAGATCATACCTGTCCTGTTCCTCTGGGGTAAAAATTTGTAGAAGGAAGCGCTTATATCCAGGTCGTTGAAGTCGCGTGCAAGTCAGTTCCGCTTGAAATACTCAAGAACCTTTTTCAGTCACTCTTGTAACTTAGTTTTACCTTATAAATAACTGGTCAATGAGATTTCCATGAAGCATAtttaaaagatttattttttaatcaaacgttGGTAAAGGTTCAGGATTGGTAGTAGGTTAGTAAAGGTAGTTCACAAAACGTTttaaactaagataaagaaaaagaagaagtgttgaaaaataaagaaataaaatacggTTATGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR051594 all species →	Family	FERM domain-containing	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13283 all species →	KREV INTERACTION TRAPPED 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0090090 all species →	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23972	FRMD8; FERM domain-containing protein 8	-	TNF signaling pathway	ko04668	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.