Gene detail

Detailed information of PFX30167.1 in Stylophora pistillata

Genomic Location: Spis.scaffold54:215402...233419
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

fcho2

ATGAAACGTAGAGATTCAATAGCCTCCTTGTTCACTGGCCGTGGTACGAAAATACTCACTGGTGAAGATGAAGAGCTCCTGTCGGATAGCGAAGATGTTGAAGAAAGACTCTCACCATCGGAAGAGTCAAACCAAGCTGCACTCGTTGACGATTCTTCAAATATCTGCGGCATTATTCTGTCACATGAAAACTTAAGAAATGAGTCAAATAATACCGATTTGATCAAGAAAGTCAACAGAAAGAGAGGAAGCCCAGAAATACTAAATTCATTAACATCGCTGAGTAATCTTTTAGCCCGCGCTGGGAGGTCGCCTAAGAGTTTAACAAGAGAAACGGAATGTGCTATTAAACAACGGAGAAAACTATCATCTACTGCAGTCCAGGGGGAGAAAAATGCCGGATTCGACGTGCTCTATCATAACATGAAATATGGAAACAATGCAAGCTGTAAGCTTGTTGAATTTGTACGCGAAAGATCTGCCGTGGAGGAAGTCTATGCTAAATCACTCTTGAAATTAGCGAAATCTGCAACTCAAGTGACACAGCTAGGCACCTTTGAGCCTCTCTGGGGAGTGCTACGGGTTGCAACCGAGAAGCTTGCAAATGCACATTTGCAAGTTGTGACAAGATTTCAAGATCTTATCAAAGAGTTGAAGGATTATGGTGACAAGCAAAAGGAAAGACACAAACAGGCTAAGGAAGAGTTTAGTAGCACAGCAGAGATTGTACAGATCATACAAACAATGACAGCCAATCTGGTCAAGGCCAAGGAGGCTTACTATGCCAGGTGTCAAGAAGTTGAAAAATCAAGAAAAGATGGATCTGGTCCCAAGGATGTTGAAAAGGCTGAAGCAAAAATGAAGAAAGCTGCTGAAGATTATAAATCTATTGTTGAAAAGCGAGAAATAATTAGAAATGACTTTCATGACAGAATGGTGGATGCTTCCAAGAAATTCCAGAAGATTGATGAAGAACACTTGAAGGTAATAATTACTTACCTTGAACAGTACATTGACTCTCAGAAGTCAGGACAAGTTCTTATTGAACAAGTTTACAAGGAGTTCTTAGGGCAAGTGAAGGCATTAACAATACATCATTTGTTGGATCAGTTTGTGAGGAGCAAGGGTACTGGCAAAGCCATTCCAGATGTTATAACATTTGAGGAGTACAGCGGGCAAGTAGAAGGTGCCATGACAAACAATCACTCACCCAGCTTGAGTGCACCCAAACACCATCATCCATCAGGGTTTCCAATAACATTGAAGAGAATAGAAAAGAAGAAAAAGAAAAAGAAGGCAAAGAAGGAGAAATCACAAAATGGTTCAGTTGACTCACCTTCAAGTGAAGGAGGGGATGTGTCCTCATCATTTGAAGTAGATGAAGAAGGATACAGAATAAGACCTCCTGATTCAGAAAGTACCAAATCAGGGGGGAATAGTTCATCTTCTGATTCAGATTCAGATGATGATGAGCCTAGGAAACTGCAAGTTGTTATAAATCCAGTGGAAGCTGATAAGAATCCACCAACAGCTTCAGTTGATGAAATAAAGAAAATTACAGGAACGCTTAGTCTCTCTTCGCCTTCATCAATGCGTAAAGGTTTAAGTTCTTCAACTGGTGAAGTCATGAAAAACAGATCCAGGTCTTCAAGCCATATGTCAAATATAAAATTGTCACGTTCAAGTGATGACTTGTTAGACATAGATTTTAGCCAAACAAGTTTTGCCAGTACTGATTCTATGACATCTGGATCACAAAGAAATTCGCTTCAACTCTCCCAAAATGGTGCTTCGAGTGTAACTGATTCTGAACCCAACACACAAAGTTCTGGAGACTTGAAATCAATGGCAGCAGCTTTGCCTTCTTCCACAAGTTTAGATTCCAGTGAAAATGTGGAAGCCGAATATTGTGATATTCCACCCTTGCTGCCTGCTAAAAAGGGAAGCATAGTGCAGGAAGAATCTTCAGAACCTCCTCCCCCCTTGCCAATCAAGAAGGGCACAGCTATTGCTAACAAAGTAGCAGAAAATGACTCAGCAGTAGCTGGAGTGTCAGAGACAAGTTCAGGTGATACTGGAATCATGTTTCAAACTGGATCTGCTTCGGCAAGTGACAGCAGTAATTCTTTGCTTCTCCTCAAGCCACCTCCAGGAACCGAGCTACCCCGTTCTGCATCTGTAGGTAGTGCAGTGCCGAGGCCAAGACCACAGCCATGGTCTTCTAGTTCATTGTTGTTTCCTACTGGTCAGTCAAGCAAGCCACCTTCAACAACATCATCATCAACAACATCATATTCAGCCGAACTGTTCAGCTGCCTGGCTGACTTTACACCAGTGACTTCCAGCAGTACAGAACCTTCTGAATCACAAAATAGTTCTCTCGCTGGTGAACATGGAAATCCAAATAGTCCCTCTAAACAACCTGTAGTAAGTTACATGGGTTCAACAACAAGTACTGGCCAACAAGCACTCAACAGAGCCACAACAGTATCCTCTCTTGGAAGCTCGCAAGAAAATGTACCTGCCCTAGTACGGTCCAAAACAGTAGGGGGACTCCCCACTATGTCAAGTGTAGTGTTTGCCAAAGGGGCAGCTGGTACTGTCTTGGGTAAAAAGGACGATAGTCTTCCTATTGCAGTGGCATTTATTGAGTCTGTGAATGCATTCTTTAGAGGAAGTGATCAGAGCAAGTGTATGGTTAAGGTCACAGGTGATATAACTGTATCATTTCCAGCCAGTGTACTTCCACTCATTTATGATGTAGAACATGCCCCAATGCTTAGCTTCCTCATTCGTGGAACATCATGTCTGGAGCAGATCTTACCAAACAAGGCTTTGATTAATAGCAAAGGCCAGTTGAGTGGTGGTGATGGCGTCACTTATGATTTTAATATGGCATCTCTGGCTGATCACCTTAAAAAACAATCTGAGCAAGGAGCAAGTACCTATTATAATATTGACATTATCAAATATGAGGTAAAAACAAATGGCTTTTCAACAACTCCACTTCAGCTCTGTAGTTACTGGAAATGTGAAGAGGAAGCAACAGATCTTAGGGTTGATTATCGTTATAATCCATCCTGTATGTCAGCTCCATGTTCGATTAGCAACTTATCTGTGCTGGTACCCATGAATGGTGGTGTTACCATCATGCAATCAAAACCATCAGCTACTTGGTCTGCTGAACACCAGAGAGCATTATGGAAACTTCAAGAAGTCTCCAATACATCAGAAACTCAAGGTACCCTGAGAGCAAGGTTTGATTTAACACAAGGCCCAAGTACACCTTCACGAATTGCTGTTCAGTTTACATGCAATGGTGCCACAATTTCCAAGTTGAATTTTGAGTTGAAAAGTCAAGAATACAAACTATCTCTTGTTAAAAAGAGGTTTACCACTGGTAAATACATAGCAGAGAGCTAG

Transcript

rna-Spis5002_mrna

ATGAAACGTAGAGATTCAATAGCCTCCTTGTTCACTGGCCGTGGTACGAAAATACTCACTGGTGAAGATGAAGAGCTCCTGTCGGATAGCGAAGATGTTGAAGAAAGACTCTCACCATCGGAAGAGTCAAACCAAGCTGCACTCGTTGACGATTCTTCAAATATCTGCGGCATTATTCTGTCACATGAAAACTTAAGAAATGAGTCAAATAATACCGATTTGATCAAGAAAGTCAACAGAAAGAGAGGAAGCCCAGAAATACTAAATTCATTAACATCGCTGAGTAATCTTTTAGCCCGCGCTGGGAGGTCGCCTAAGAGTTTAACAAGAGAAACGGAATGTGCTATTAAACAACGGAGAAAACTATCATCTACTGCAGTCCAGGGGGAGAAAAATGCCGGATTCGACGTGCTCTATCATAACATGAAATATGGAAACAATGCAAGCTGTAAGCTTGTTGAATTTGTACGCGAAAGATCTGCCGTGGAGGAAGTCTATGCTAAATCACTCTTGAAATTAGCGAAATCTGCAACTCAAGTGACACAGCTAGGCACCTTTGAGCCTCTCTGGGGAGTGCTACGGGTTGCAACCGAGAAGCTTGCAAATGCACATTTGCAAGTTGTGACAAGATTTCAAGATCTTATCAAAGAGTTGAAGGATTATGGTGACAAGCAAAAGGAAAGACACAAAcaggCTAAGGAAGAGTTTAGTAGCACAGCAGAGATTGTACAGATCATACAAACAATGACAGCCAATCTGGTCAAGGCCAAGGAGGCTTACTATGCCAGGTGTCAAGAAGttgaaaaatcaagaaaagatGGATCTGGTCCCAAGGATGTTGAAAAGGCTGAagcaaaaatgaagaaagctgCTGAAGATTATAAATCTATTGTTGAAAAGCGAGAAATAATTAGAAATGACTTTCATGACAGAATGGTGGATGCTTCCAAGAAATTCCAGAAGATTGATGAAGAACACTTGAAGGTAATAATTACTTACCTTGAACAGTACATTGACTCTCAGAAGTCAGGACAAGTTCTTATTGAACAAGTTTACAAGGAGTTCTTAGGGCAAGTGAAGGCATTAACAATACATCATTTGTTGGATCAGTTTGTGAGGAGCAAGGGTACTGGCAAAGCCATTCCAGATGTTATAACATTTGAGGAGTACAGCGGGCAAGTAGAAGGTGCCATGACAAACAATCACTCACCCAGCTTGAGTGCACCCAAACACCATCATCCATCAGGGTTTCCAATAACATTGAAGAGaatagaaaagaagaaaaagaaaaagaaggcaaagaagGAGAAATCACAAAATGGTTCAGTTGACTCACCTTCAAGTGAAGGAGGGGATGTGTCCTCATCATTTGAAGTAGATGAAGAAGGATACAGAATAAGACCTCCTGATTCAGAAAGTACCAAATCAGGGGGGAATAGTTCATCTTCTGATTCAGATTCAGATGATGatgaGCCTAGGAAACTGCAAGTTGTTATAAATCCAGTGGAAGCTGATAAGAATCCACCAACAGCTTCAGttgatgaaataaagaaaattacaggAACGCTTAGTCTCTCTTCGCCTTCATCAATGCGTAAAGGTTTAAGTTCTTCAACTGGTGAAGTCATGAAAAACAGATCCAGGTCTTCAAGCCATATGTCAAATATAAAATTGTCACGTTCAAGTGATGACTTGTTAGACATAGATTTTAGCCAAACAAGTTTTGCCAGTACTGATTCTATGACATCTGGATCACAAAGAAATTCGCTTCAACTCTCCCAAAATGGTGCTTCGAGTGTAACTGATTCTGAACCCAACACACAAAGTTCTGGAGACTTGAAATCAATGGCAGCAGCTTTGCCTTCTTCCACAAGTTTAGATTCCAGTGAAAATGTGGAAGCCGAATATTGTGATATTCCACCCTTGCTGCCTGCTAAAAAGGGAAGCATAGTGCAGGAAGAATCTTCAGAACCTCCTCCCCCCTTGCCAATCAAGAAGGGCACAGCTATTGCTAACAAAGTAGCAGAAAATGACTCAGCAGTAGCTGGAGTGTCAGAGACAAGTTCAGGTGATACTGGAATCATGTTTCAAACTGGATCTGCTTCGGCAAGTGACAGCAGTAATTCTTTGCTTCTCCTCAAGCCACCTCCAGGAACCGAGCTACCCCGTTCTGCATCTGTAGGTAGTGCAGTGCCGAGGCCAAGACCACAGccaTGGTCTTCTAGTTCATTGTTGTTTCCTACTGGTCAGTCAAGCAAGCCACCTTCAacaacatcatcatcaacaaCATCATATTCAGCCGAACTGTTCAGCTGCCTGGCTGACTTTACACCAGTGACTTCCAGCAGTACAGAACCTTCTGAATCACAAAATAGTTCTCTCGCTGGTGAACATGGAAATCCAAATAGTCCCTCTAAACAACCTGTAGTAAGTTACATGGGTTCAACAACAAGTACTGGCCAACAAGCACTCAACAGAGCCACAACAGTATCCTCTCTTGGAAGCTCGCAAGAAAATGTACCTGCCCTAGTACGGTCCAAAACAGTAGGGGGACTCCCCACTATGTCAAGTGTAGTGTTTGCCAAAGGGGCAGCTGGTACTGTCTTGGGTAAAAAGGACGATAGTCTTCCTATTGCAGTGGCATTTATTGAGTCTGTGAATGCATTCTTTAGAGGAAGTGATCAGAGCAAGTGTATGGTTAAGGTCACAGGTGATATAACTGTATCATTTCCAGCCAGTGTACTTCCACTCATTTATGATGTAGAACATGCCCCAATGCTTAGCTTCCTCATTCGTGGAACATCATGTCTGGAGCAGATCTTACCAAACAAGGCTTTGATTAATAGCAAAGGCCAGTTGAGTGGTGGTGATGGCGTCACTTATGATTTTAATATGGCATCTCTGGCTGATCACCTTAAAAAACAATCTGAGCAAGGAGCAAGTACCTATTATAATATTGACATTATCAAATATGAGGTAAAAACAAATGGCTTTTCAACAACTCCACTTCAGCTCTGTAGTTACTGGAAATGTGAAGAGGAAGCAACAGATCTTAGGGTTGATTATCGTTATAATCCATCCTGTATGTCAGCTCCATGTTCGATTAGCAACTTATCTGTGCTGGTACCCATGAATGGTGGTGTTACCATCATGCAATCAAAACCATCAGCTACTTGgtCTGCTGAACACCAGAGAGCATTATGGAAACTTCAAGAAGTCTCCAATACATCAGAAACTCAAGGTACCCTGAGAGCAAGGTTTGATTTAACACAAGGCCCAAGTACACCTTCACGAATTGCTGTTCAGTTTACATGCAATGGTGCCACAATTTCCAAGTTGAATTTTGAGTTGAAAAGTCAAGAATACAAACTATCTCTTGTTAAAAAGAGGTTTACCACTGGTAAATACATAGCAGAGAGCTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10291 all species →	muHD	Muniscin C-terminal mu homology domain	Domain	Interproscan
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR018808 all species →	Domain	Muniscin, C-terminal	Interproscan
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR028565 all species →	Domain	Mu homology domain	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR031160 all species →	Domain	F-BAR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23065 all species →	PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20042	FCHO; F-BAR domain only protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.