Gene detail

Detailed information of PFX30248.1 in Stylophora pistillata

Genomic Location: Spis.scaffold53:74452...92844
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TBC1D9

ATGTGGATAAAACCCGAAGAAGTTCTTCTGGCAAATGCTCTTTGGGTAACTGAGAGAGACAACCCTTACTTTGTGCTTCAACGACGAAAAGGCCACGGTGGAGGTGGTTTGACTTCGCTTCTGATCGGAACTTTAGATAATGTTCTCGACACAAAGCCTGCACCATTTCGCATACTTTTACAACTGCCAAGTTCCGACATTAGTTATGTGATTGCTAGTGCAGCATCATTCCAAGAGATTGAGGAGGACTGGAACTGGTTAACAAAACATTTGCTAGGGACATTAGAAACTATTGAAAGTGAAGAGGACATCAGAGAGTTTGTGAAGGCAAAGATTGAAAGTCTTGTGGCGAATGCAACTGTAGATCAAGATGTTGCGGCAGAAACAGAAACCAACAGATTTAAGTCAGCCACATCTCTAGAGAGAAGTAGTAGTGTCCTATTTACTGATGGAGTCAAAGTCTCAACAAGGGAAGGAGAGTTTTGCTTCTCATTGTTGCTTCATATAACAGAAACATTTGGTCTCATGGAGCAGCTTGCTAATCTGGCCATGCGACAGTTGCTGTCAGAAGAAGGTTACGAGGAGGACAAGACATTACCTTTACTCACAAAAAATAGAGGAAAACAAGTGAAAAAAGTACCTTCTCTGAAGAGAGATTTGGATGCCAGAGCACAGAGTGAATTTTACAGAAACTTGTTTCGGCTGCCTGTAGAGGAGAAGCTTGATGGTCATTGTGAATGCACATTGTGGAGTCCTCATGAAAAGGCTCACGAATGGGGAACACTGTACTGCTCTCCAAACTACCTCTGCTTTAGCAGCAAGGTAAGACAGTTACTTTCGGTGGTGATTCCAATGAGAGAAATTGCACTGGTTGAAAAAGTGGAAACCTCAGCTATAATACCAAATGCAGTACACATCACAACCAAATCAAAGGCTAACTTTTTGTTTGCTTCTCTGCAAGACCGAGACTATCTGACGAGACTAATTTCTGACTTCTTAGCAAAGACTCCAGAGTCGAAATACATGAATCTTGTGCTTCTGTTTGAAAAAAGATCCATTGATAAAGGAGACTGGGACTTAAAGGGCACCGTGAATACCAAGGCGACGTTTCAGCCACCTCTAACCACGGTGTTCTCTAACACACCCGCTGACCATGTGAATGCCAAGGAGACTATCAAAGAACATTTGTGGCGACTGCATTTCTCAGACTATGGAAGAGGTGTTTGTATGTATCGCACGGTCAAGACCCAGGATTTGATACTCAAAGGAGTTCCTGATAGTCTGAGGGCTGAAGTATGGTTAATATTCTCTGGTGCTATCAATCAGATTCAAACTCATCCTGGTTACTATGCCACACTGGTGGACGAGTGCGAAGGAAAAATCACTTTGGCAACTGAGGAGATTGAAAGAGACCTACACAGGTCACTTCCTGAACATCCTGCATTTCAATCTGAAGTTGGAATTGCAGCTTTGCGAAGAGTTCTGACAGCTTACGCCTGGAGAAACCCAAGCATAGGGTATTGTCAAGCCATGAACATTGTAGCATCAGTGCTGCTGCTATACTGTACAGAAGAAGAAGCTTTCTGGTTATTAGTAGCTAACACTTGTTTTCTGGATGCTTTCAGTGTCATGCCATTTACCAGTGCTGTTAGCATCATAGATTGCTTTTTCTATGACGGTACCAAGGTTTCCTTGGCTACACTTGACGCAAACAGAAACAAGCTTTTAGCTGTGCAAGACGATGGTGAGGCAATGACCGTATTAGGGAATTACCTGGAGCACGTGACCAACAGAGACGCGGCCACGATGACCAATGGCCAAGGAGCTTACAACAGAAACAATGGATCGCCTTCCTCGGGGTACCACAGCACAGTAGATGTAGCCAACCTTATTTTGGAATCATATCAGAAGTTTGGTTTCATCACAGCAGAGACCATCGACTCCATGAGAAATGCGCAGAGACTTAAAGTTGTTCAGGCAGGACATATTCTGACACGTAACCATGGCAACCTAGAGATTAAGGATACTCCACCCCAGTTTCCGCTCATACAGAATCAGTGTATTGACTGCGAGAGATTCGCGCCTCTTTTTAAGTGCCTTACGAACTGGGGGACTGGGGAGATTGGTCCTACCTTGACTCAGAGGGCGTTCAAGGTGATTGATCAAGATGAAGACGGACTGATTAGTTTCCGTGAGTTTGCGCAAGGCTTGGGTATCATCTGTAAGGGTCAACTCCAAGATCGTATGCAGTTCATGTACCGCATGCACGTCCCTCCTGCCCTGAGTGACGACGACACCGCGCAAGTCAGTGATGAAGAGTCAGTTGACAGCTGTGATGAGCTGACTGAAGGTGAAAGTGTCGAGGACATGAAGACGCAGTCATGTGATCAGCTACCGCCTCGTGATGAGTGCGTCTCGAGGGTTCGAACTAAAGAAGAGTCGCCCGTGAGTGTTTTGTTGAAAACAGCCGCACGAAGTCATAGAACGATGACGGATGAAAACAGTGATAAGAAAGTCAATGAAATTCCACGAATGAGTCAGGGAAATTTTATTTTGTTGTGGAAAACTATGTACTCGCTGTTCCGCGAGCTGCCAAATGAACAACAGATGTATCAAGCCATTGCTTCAGTCGGCAATATACTGCTTAAGCTGGGGGAATTTGGAGGAAAGTTGGACACTAGTGGAGACAAAACTACTGATCAGCGGTCAAAGAGCGATGATCTAGACAGGTTCATGGACCCACTTCACGTAGCAGACTTTGAAACATCGACATCGAACGCCGAAGATGCGTTAAACACACCTGGCGAAATAACTGTAACGTCAGAACTTGAATCGTCGACTTTAGTAAAGGAAGAACTGATTGATGCCGCCAGGAGTAGTGAATCTTCGCTCAGTAGTCCGGTGAGAAGCGCGGCAGGAGATGATTTTATTCTCGTGGGCAGCGACGAGGGGTTCAGCACACCTGAGGCAGTGACCTGCGAAGAGAATGACACTCAAGACACCTTAGACGAAGTGTATAACAAACTAAGTCATGGTGATCCCCTTTCCACGGGTGAAAACTCCAATCAAATAAGAAATTCTAATGAAAAGGACTTCAAAGGATTACTTGTTGTCACACAAGGCCAATACTCCTCCGAAAGTACTTTTGATGAACGTAAAGGCCTATCAAACGTTAGCTCTTCATCCGGGACTTCAATTGGAAACCAGTCACACCATAGACATGCATCCGGGACATTTGATATGGACGAATCAAGTGACAGACCGTTGTCAGGTGTGTTAGATACTGACCAATCAAACGAAAGGCTTTCGCCCGGTGCTGTCGACCTTGATTGGTCGATTTGTTTTGAACAATTTCTGGCTTCTATGTCCACCGAGCCGTATCTTGTCCATTATTTTGACGAGACTGTTGACGTCATTCAACGCCTTAAAAAAATGAAAACGGAGGGAATCGGGAGCTTCATAAACGCTTCTAGGACGAACTTGAATTCAGCAGAGTAG

Transcript

rna-Spis4929_mrna

ATGTGGATAAAACCCGAAGAAGTTCTTCTGGCAAATGCTCTTTGGGTAACTGAGAGAGACAACCCTTACTTTGTGCTTCAACGACGAAAAGGCCACGGTGGAGGTGGTTTGACTTCGCTTCTGATCGGAACTTTAGATAATGTTCTCGACACAAAGCCTGCACCATTTCGCATACTTTTACAACTGCCAAGTTCCGACATTAGTTATGTGATTGCTAGTGCAGCATCATTCCAAGAGATTGAGGAGGACTGGAACTGGTTAACAAAACATTTGCTAGGGACATTAGAAACTATTGAAAGTGAAGAGGACATCAGAGAGTTTGTGAAGGCAAAGATTGAAAGTCTTGTGGCGAATGCAACTGTAGATCAAGATGTTGCGGCAGAAACAGAAACCAACAGATTTAAGTCAGCCACAtCTCTAGAGAGAAGTAGTAGTGTCCTATTTACTGATGGAGTCAAAGTCTCAACAAGGGAaggagagttttgctTCTCATTGTTGCTTCATATAACAGAAACATTTGGTCTCATGGAGCAGCTTGCTAATCTGGCCATGCGACAGTTGCTGTCAGAAGAAGGTTACGAGGAGGACAAGACATTACCTTTACTCACAAAAAATAGAggaaaacaagtgaaaaaagTACCTTCTCTGAAGAGAGATTTGGATGCCAGAGCACAGAGTGAATTTTACAGAAACTTGTTTCGGCTGCCTGTAGAGGAGAAGCTTGATGGTCATTGTGAATGCACATTGTGGAGTCCTCATGAAAAGGCTCACGAATGGGGAACACTGTACTGCTCTCCAAACTACCTCTGCTTTAGCAGCAAGGTAAGACAGTTACTTTCGGTGGTGATTCCAATGAGAGAAATTGCACTGGTTGAAAAAGTGGAAACCTCAGCTATAATACCAAATGCAGTACACATCACAACCAAATCAAAGGCTAACTTTTTGTTTGCTTCTCTGCAAGACCGAGACTATCTGACGAGACTAATTTCTGACTTCTTAGCAAAGACTCCAGAGTCGAAATACATGAATCTTGTGCTTCTGTTTGAAAAAAGATCCATTGATAAAGGAGACTGGGACTTAAAGGGCACCGTGAATACCAAGGCGACGTTTCAGCCACCTCTAACCACGGTGTTCTCTAACACACCCGCTGACCATGTGAATGCCAAGGAGACTATCAAAGAACATTTGTGGCGACTGCATTTCTCAGACTATGGAAGaGGTGTTTGTATGTATCGCACGGTCAAGACCCAGGATTTGATACTCAAAGGAGTTCCTGATAGTCTGAGGGCTGAAGTATGGTTAATATTCTCTGGTGCTATCAATCAGATTCAAACTCATCCTGGTTACTATGCCACACTGGTGGACGAGTGCGAAGGAAAAATCACTTTGGCAACTGAGGAGATTGAAAGAGACCTACACAGGTCACTTCCTGAACATCCTGCATTTCAATCTGAAGTTGGAATTGCAGCTTTGCGAAGAGTTCTGACAGCTTACGCCTGGAGAAACCCAAGCATAGGGTATTGTCAAGCCATGAACATTGTAGCATCAGTGCTGCTGCTATACTGTACAGAAGAAGAAGCTTTCTGGTTATTAGTAGCTAACACTTGTTTTCTGGATGCTTTCAGTGTCATGCCATTTACCAGTGCTGTTAGCATCATAGATTGCTTTTTCTATGACGGTACCAAGGTTTCCTTGGCTACACTTGACGCAAACAGAAACAAGCTTTTAGCTGTGCAAGACGATGGTGAGGCAATGACCGTATTAGGGAATTACCTGGAGCACGTGACCAACAGAGACGCGGCCACGATGACCAATGGCCAAGGAGCTTACAACAGAAACAATGGATCGCCTTCCTCGGGGtaCCACAGCACAGTAGATGTAGCCAACCTTATTTTGGAATCATATCAGAAGTTTGGTTTCATCACAGCAGAGACCATCGACTCCATGAGAAATGCGCAGAGACTTAAAGTTGTTCAGGCAGGACATATTCTGACACGTAACCATGGCAACCTAGAGATTAAGGATACTCCACCCCAGTTTCCGCTCATACAGAATCAGTGTATTGACTGCGAGAGATTCGCGCCTCTTTTTAAGTGCCTTACGAACTGGGGGACTGGGGAGATTGGTCCTACCTTGACTCAGAGGGCGTTCAAGGTGATTGATCAAGATGAAGACGGACTGATTAGTTTCCGTGAGTTTGCGCAAGGCTTGGGTATCATCTGTAAGGGTCAACTCCAAGATCGTATGCAGTTCATGTACCGCATGCACGTCCCTCCTGCCCTGAGTGACGACGACACCGCGCAAGTCAGTGATGAAGAGTCAGTTGACAGCTGTGATGAGCTGACTGAAGGTGAAAGTGTCGAGGACATGAAGACGCAGTCATGTGATCAGCTACCGCCTCGTGATGAGTGCGTCTCGAGGGTTCGAACTAAAGAAGAGTCGCCCGTGAGTGTTTTGTTGAAAACAGCCGCACGAAGTCATAGAACGATGACGGATGAAAACAGTGATAAGAAAGTCAATGAAATTCCACGAATGAGTCAGggaaattttattttgttgtggaAAACTATGTACTCGCTGTTCCGCGAGCTGCCAAATGAACAACAGATGTATCAAGCCATTGCTTCAGTCGGCAATATACTGCTTAAGCTGGGGGAATTTGGAGGAAAGTTGGACACTAGTGGAGACAAAACTACTGATCAGCGGTCAAAGAGCGATGATCTAGACAGGTTCATGGACCCACTTCACGTAGCAGACTTTGAAACATCGACATCGAACGCCGAAGATGCGTTAAACACACCTGGCGAAATAACTGTAACGTCAGAACTTGAATCGTCGACTTTAGTAAAGGAAGAACTGATTGATGCCGCCAGGAGTAGTGAATCTTCGCTCAGTAGTCCGGTGAGAAGCGCGGCAGGAGATGATTTTATTCTCGTGGGCAGCGACGAGGGGTTCAGCACACCTGAGGCAGTGACCTGCGAAGAGAATGACACTCAAGACACCTTAGACGAAGTGTATAACAAACTAAGTCATGGTGATCCCCTTTCCACGGGTGAAAACTCCAATCAAATAAGAAATTCTAATGAAAAGGACTTCAAAGGATTACTTGTTGTCACACAAGGCCAATACTCCTCCGAAAGTACTTTTGATGAACGTAAAGGCCTATCAAACGTTAGCTCTTCATCCGGGACTTCAATTGGAAACCAGTCACACCATAGACATGCATCCGGGACATTTGATATGGACGAATCAAGTGACAGACCGTTGTCAGGTGTGTTAGATACTGACCAATCAAACGAAAGGCTTTCGCCCGGTGCTGTCGACCTTGATTGGTCGATTTGTTTTGAACAATTTCTGGCTTCTATGTCCACCGAGCCGTATCTTGTCCATTATTTTGACGAGACTGTTGACGTCATTCAACgccttaaaaaaatgaaaacggaGGGAATCGGGAGCTTCATAAACGCTTCTAGGACGAACTTGAATTCAGCAGAGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02893 all species →	GRAM	GRAM domain	Domain	Interproscan
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR004182 all species →	Domain	GRAM domain	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR036017 all species →	Domain	TCB1D9/TCB1D9B, PH-GRAM domain 2	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47666 all species →	PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19951	TBC1D8_9; TBC1 domain family member 8/9	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.