Gene detail

Detailed information of PFX30508.1 in Stylophora pistillata

Genomic Location: Spis.scaffold49:256024...260003
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Adarb1

ATGGCGGAAACGGCAGTTGATTTCGAAGCAGAAGTGAGTGCAACAAAAAGCGAACAAGTCGCGGTCATTCCTGGATTGGGAGACTTACCAGTCTCTAATAATCAAGTGTTAAAAGGTAAAAATCAGTCAGGAGACGAAAATAGTCACACACTGCCGTGTGAAGACAGTGATGACCCCATGCGAGCTGGAGACAAACCGGACGCTTGTTTGCCGCCGCCAGCGAAGAAGAGAAGGCGATCGACAAAGCGGAAAAGCGACTCTCTTGGGGCAAGTGAGGCGAAAAATCCTTTGATGCAACTGAACGAAATACGACCTGGTCTTACGTATGATATCACTGTTAAAGACGGTCAGACACATTGCCCTGTGTTCTTCGTTTCTGTGAATGTTGATGGAAATACCTTCGAGGGACAAGGCTCAAGTAAACAGAAAGCGAAGCACAATGCAGCCGAGAACGTGTTAAAGTCTTTTATTACTCAGATCCGTTCACCCGCTCATCAGTTGGTCACGGGAACTCGCGACGTTACCACAGACTTTACTTCCGATAATACTGGATCACTTCTGAACATATTTGGTAATGGCGATCAGCCGATGGAGGATGAAGTTGTAAGTGAGAATCCAGGTGAATTTGGAGTTCCTCCAAAGGGTGTCACGAAAACTCCAAAGGTGCAAACTGAAGCCGGAAAGCATCCAGTTTCGCTTTTAAATGAGTTTCACCCGGGGCTTAGTTATGAATTTCTCGGTGAAGAAGGAGAACAAAATGCGAAGCAATTCAAATTTAAAGTCACAATCAACGGCCAAGATTTCCTAGGACACGGTAGCAGTAAAAAGAAAGGCAAGGCCAATGTTGCATCTAAGGCACTTTTTGCATTGTACAACATCCGCACCTTTTATGCATTTGGCCAATCAGAAGCAAGGCTGCAACCTGTGTACTTAGAACCTCCACCATCAGCTCAACTGGAGCAGGTTGCCGCAGATCTGATTGCTGATGCTGTTCTGGCCAAATTTCAGAGTCTGCAGCCAACAGCAGGGGAACCAATTAGACGCAAAGTTTTGGCTAGCATCGTTATGACAAGTCGAGGTGAAAGTGAACAAAAATTCGAGGTCATTAGCATGGGAACTGGAACCAAGTTTATAAGTGGAGAGTACATCAGTGACCAGGGACTTGCAGTGAATGATTGCCATGGGGAAATAATTGCTAGAAGATCCTTCGTGCGATTTTTGTACTCACAGCTTGAGTTGTGTGCAGAGGGATATGAAGACGAGTCCATATTTGAGAAGAAAAAGAGTGGATTCTTTGGTGTGAGAGAGAATGTGGAGTTCCACTTGTACATCAATACATCGCCATGTGGTGACGCTCGTGTTTTTTCTCCACATGAGCCGATCATGGGTGAATCTGATAAGCATCCTGGAAGAAAAAAAAGAGGACTTTTAAGAGTAAAGCTTGAAAATGGAGAAGGCACTATTCCTGCAATGAAAGCTGACACAACCATCCAAACTTGGGATGGTGTCCTTCAAGGCGAGAGGCTTCGCACCATGTCATGTTCGGACAAAGTCTGTCGTTGGAATGTACTTGGGGTGCAAGGGGCACTACTCAGTCACTTTCTCGAACCAATATATCTACAGTCAGTTGTTCTCGGTAGCTTGTACCATTACGAGCACATGTCAAGAGCCATGTATCATCGTCTTGGTGATCTAGAAGGGTTGCCTCCTCTCTTCAAACAGAATCGTCCACTCATGAATGGAACAAGTACCCCAGAGCCGCGCATGACAGTGAAGTCGCCAAACATTAGTGTCAATTGGAGTGAAGGAGACCAGGGATTTGAAATTGTAAATGCTACAAAAGGAGTGATTGGAGATGGACAGGCGGTGTCAAGGCTTTGTAAACAAAGTTTGTTCAAACGTTTCATTGTGTTGTGGAAGAAACTAAGACCAGGAATTACAGGGCCATTGTCATACCATGGTGCCAAAGCAGCAGCTGGTCCGTATCAAGCAGCTAAAATGATTGTGATGAAAGGATTTGAAAGCCAGGGTCTTGGTACATGGATAAGGAAGCCTGTGGAACAAGATATGTTTGAACTGTCTGACGAGGATCTCTAA

Transcript

rna-Spis4674_mrna

CTAAAATGGCGGAAACGGCAGTTGATTTCGAAGCAGAAGTGAGTGCAACAAAAAGCGAACAAGTCGCGGTCATTCCTGGATTGGGAGACTTACCAGTCTCTAATAATCAAGTGTTAAAAGGTAAAAATCAGTCAGGAGACGAAAATAGTCACACACTGCCGTGTGAAGACAGTGATGACCCCATGCGAGCTGGAGACAAACCGGACGCTTGTTTGCCGCCGCCAGCGAAGAAGAGAAGGCGATCGACAAAGCGGAAAAGCGACTCTCTTGGGGCAAGTGAGGCGAAAAATCCTTTGATGCAACTGAACGAAATACGACCTGGTCTTACGTATGATATCACTGTTAAAGACGGTCAGACACATTGCCCTGTGTTCTTCGTTTCTGTGAATGTTGATGGAAATACCTTCGAGGGACAAGGCTCAAGTAAACAGAAAGCGAAGCACAATGCAGCCGAGAACGTGTTAAAGTCTTTTATTACTCAGATCCGTTCACCCGCTCATCAGTTGGTCACGGGAACTCGCGACGTTACCACAGACTTTACTTCCGATAATACTGGATCACTTCTGAACATATTTGGTAATGGCGATCAGCCGATGGAGGATGAAGTTGTAAGTGAGAATCCAGGTGAATTTGGAGTTCCTCCAaagggtgtcacgaaaactccAAAGGTGCAAACTGAAGCCGGAAAGCATCCAGTTTCGCTTTTAAATGAGTTTCACCCGGGGCTTAGTTATGAATTTCTCGGTGAAGAAGGAGAACAAAATGCGAAgcaattcaaatttaaagtcaCAATCAACGGCCAAGATTTCCTAGGACACGGTAGcagtaaaaagaaaggcaaGGCCAATGTTGCATCTAAGGCACTTTTTGCATTGTACAACATCCGCACCTTTTATGCAtttggccaatcagaagcaagGCTGCAACCTGTGTACTTAGAACCTCCACCATCAGCTCAACTGGAGCAGGTTGCCGCAGATCTGATTGCTGATGCTGTTCTGGCCAAATTTCAGAGTCTGCAGCCAACAGCAGGGGAACCAATTAGACGCAAAGTTTTGGCTAGCATCGTTATGACAAGTCGAGGTGAAAGTGAACAAAAATTCGAGGTCATTAGCATGGGAACTGGAACCAAGTTTATAAGTGGAGAGTACATCAGTGACCAGGGACTTGCAGTGAATGATTGCCATGGGGAAATAATTGCTAGAAGATCCTTCGTGCGATTTTTGTACTCACAGCTTGAGTTGTGTGCAGAGGGATATGAAGACGAGTCCAtatttgagaagaaaaagagtGGATTCTTTGGTGTGAGAGAGAATGTGGAGTTCCACTTGTACATCAATACATCGCCATGTGGTGACGCTCGTGTTTTTTCTCCACATGAGCCGATCATGGGTGAATCTGATAAGCatcctggaagaaaaaaaagaggactTTTAAGAGTAAAGCTTGAAAATGGAGAAGGCACTATTCCTGCAATGAAAGCTGACACAACCATCCAAACTTGGGATGGTGTCCTTCAAGGCGAGAGGCTTCGCACCATGTCATGTTCGGACAAAGTCTGTCGTTGGAATGTACTTGGGGTGCAAGGGGCACTACTCAGTCACTTTCTCGAACCAATATATCTACAGTCAGTTGTTCTCGGTAGCTTGTACCATTACGAGCACATGTCAAGAGCCATGTATCATCGTCTTGGTGATCTAGAAGGGTTGCCTCCTCTCTTCAAACAGAATCGTCCACTCATGAATGGAACAAGTACCCCAGAGCCGCGCATGACAGTGAAGTCGCCAAACATTAGTGTCAATTGGAGTGAAGGAGACCAGggatttgaaattgtaaatgcTACAAAAGGAGTGATTGGAGATGGACAGGCGGTGTCAAGGCTTTGTAAACAAAGTTTGTTCAAACGTTTCATTGTGTTGTGGAAGAAACTAAGACCAGGAATTACAGGGCCATTGTCATACCATGGTGCCAAAGCAGCAGCTGGTCCGTATCAAGCAGCTAAAATGATTGTGATGAAAGGATTTGAAAGCCAGGGTCTTGGTACATGGATAAGGAAGCCTGTGGAACAAGATATGTTTGAACTGTCTGACGAGGATCTCTAAACTGAGAAGGTGGAGATCAAGTTGTTGGAAGTGTTTCAGAAAGGAAATATGTGTCTAGTAAAAGTAGGTACTTTTGGTGCAGAACATGGTATTTCTTGCCTaacattttcaagtttcttcCCACAAGAAATTACTTTAACTTCAAAATGATTGTAGTTTGCACCCTACTGAGTCAGGTTTTACAGGGATTATGAACACagcagaaaagaaagtttttagtGAGATCCCTTTTTAGATGTACTTATATGGAGCATTTGGTAAAGATCTCAGTCAAGGGACGTTATAGATATTATCAAGACTGtgaagtttcattttcatctctgTTTCATTAGAATGCCTTTTAATATTCCACATAAAGATCATACAACTTTTTGCAGGTGTAAATTTTGTCATCCTTCTTGAAAAGAAGTTGCATATAGGCAGTCCTTTGTATAGTCATTTAAGATTCTAAGAAAATTCCCAGTAAATTAAGTATGTTCACACAGCTTATAGTGATCTAAGCATTTTGTTTCTAAATATCTTTTTCAATGTCTTTCATGTTTGTAGACAATGTAAACTAAGAAACTTGGTCCAAAGGGTCCAATAAAGTTTAGCTATGTATAAAACAAGGAAGAACTGGACGTTTACTTAGTTGGATGGCAAACTGTTGtctcctgttttttgtttgtttgtttttttaaatttacttacctttctcaaaatatttttcactggCATTAATTTGAGGTTGTTGATTACTTATGGACCAGCTATTAAATGGTTGAGATGCACAGAAActtattaaat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02137 all species →	A_deamin	Adenosine-deaminase (editase) domain	Family	Interproscan
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR002466 all species →	Domain	Adenosine deaminase/editase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10910 all species →	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003726 all species →	Molecular Function	double-stranded RNA adenosine deaminase activity	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006382 all species →	Biological Process	adenosine to inosine editing	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008251 all species →	Molecular Function	tRNA-specific adenosine deaminase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004000 all species →	Molecular Function	adenosine deaminase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13194	ADARB; double stranded RNA-specific editase B	EC:3.5.-.-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.