Gene detail

Detailed information of PFX30575.1 in Stylophora pistillata

Genomic Location: Spis.scaffold48:522962...530000
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis4626_mrna

CGGCCATCTTGAATGAGTGGATGAACTCGGTAGAGACTACCTAAAGAAATTGTAACATGGGAGCAGGCCAATCTGCAGAAATCCCAGGCGGTGGATCTGAAGGATATCATGTACTAAGGGTTCAAGAAAATTCTCCTGGATATAAAGCAGGATTGGAGCCCTTCTTTGATTTTATAATCTCGATAGAAAATACGCGACTGGATCAAGATAATGAAACACTGAAGGAAATCCTTAAATCAAATGCAGAAAAACCTGTTAAGATGCTTGTTTTTAGTAGCAAAACATGCAAAGTTAGAGAAGTTAGTATCACTCCAAGCAGTATGTGGGGTGGCCAGGGTCTCCTAGGAGTTAGTATTCGTTTTTGTTCCTTTGAAGGAGCTAATGAAAACGTTTGGCATGTTTTGGAAGTTCAACCAAACTCACCTGCTGACATAGCTGGGTTGCGCTCAAATACAGATTACATCATAGGAGCTGATTCAGTTCTACATGAgTCTGAAGACCTGTTCCAACTTATAGAATCACATGAAGGGAAACTACTTAAGTTATATGTCTACAATTCTGAAACAGATGGTTGTAGAGAGATAACCATTACACCAAACAGAAATTGGGGTGGCGAGGGAAGTATGGGATGTGGCATAGGATATGGCTATCTTCACAGAATACCAATCAAAGATTCTCCAGATGTGGCTCTACAACCTAAAGCTTCATCTCCTGCTCCTGATGGCTTCTCTGATGTTCCTCTCAGTGGACCCACACCTGTGCCTCTTGTTGCAGTTTCAACATCAACAGTTTCACCAATACAAACAGCAGGTCTGGAGTCAGGAATGACATCCTTGAACCTCAACACAACTGCAACATCACCAGCCATGAACCCATTCAACCCAAGTTTCCCAACCACATCTCCTGTTCCAGCTGCTGTATATCCAGGAGCTGCTCCTTTGGTAGTACCGGGAGGTGCCCCACCTACTGTTCCCTCATTCTTACCTCAAGTTCAGGGTACAACTGCGACAGGGAGCAAACAACCACCACCTTTCTCAGTAGCCCAGATGAATACAGGGGCTGCATCAACAACACCAGCTGGAAGTTCTGCAGTCACTGTGACAGCTACAGCAACACCCCTTATGACTGATATCACTGAGGGAGCAATGCCTGCCCCCTTAATACCCACAACAAGCCCATCATTGCCAAGTGATGACATCTCTGCAGCTTTTCAACCAACGCCACCACCTTCACAACCAATTGCAACATCGTAAAACAGAATAGCCTGAGAGTAATTACAGTCAATAGATACACTAGAAATATATTATCATACAAAAGTGTATTTTGCATGGCTATTAAAATTTTGTACTCTCAGCTgtagttatttttttctgtctctcATCTTATTTGCAAAGGTGGCAGTAAGGGTAACCAAGACAAAAATGTATTGCCTACTGATCAGGTGAAGGTAGTCCAATTCTTTCCTTTGGGGGAGGTTTTAATTCTAGCAGTTCTTCCTGGTAGGGGACATTTTCTTTTCGGTAGTAGTGTCTTGAATTTTTGGGTCAGTCTTGTTTTCCCATTCAAAACAACTTTACTACAGAGCTTATGTGATCACTTTGGACAGCTTCAATCTGAAGTGACTTTGTTCAACACAAAATTGTATTGTGCACCAGTAAGTGTGCTTTGACTGCAGATTTTCCTTGTCTGAGTCACTAATCTGAAAATTGCTATTATGAtatctgtaataataataacaacttgCTAAGAagtacagagaaaaaaaatttaatgctgtGGAAGTTTTTTGTAAATCTTAACTTGGAGTGCAACTGACCTGCAAGAATGTCAGTAATATGCAAGTGAGAGAGCAAATAAGTGAAAAAGTACCTATCTAAATCATTGGAGCTTCTCTGTCAAAACTGTTCATCAGTTTGCAAGAACATAATGTTTTGTACGGATTTGAAGGTCAGTTTTTCGTTCAAAAGAGTGACCTAAATAAATTCATCTTAATAGAAATTGACTTTGAATTAAAAGCTAGCGttaagaagtcacgacgtttcgacccctctgaggtcattttcaagtgaataagttttccaaatcagcataaatatgttgaagcaagttgaagacgataaaatgcGGTGAACgctaaaatttgtgaaaaagtgtaaacagtATACAacggaagagaataaaagaataaaataatcgtaGCCCGAAGGACGTTTAGTGCTACGATTATTTTAATCCTTTATTCTCTTCcgttgtatattgtttacactttttcacatattttagcgttcaccacattttatcgtcttcaaattgcctcaacatatttatgctgatttggaaaacttactcacttgaaaatgacctcagagaggtcgaaacgtcgtgacttcttWgcgctagcttttatttcaaagtcgatttctaagaaactacttattaaTAGAAATTTGATGTGTTTACAAGAGATAGAAGGTGGATATGTACTTACCTTAAGGAAGTGTAATAAATGGCGAGGAGTTACCATGAGTATTCAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04495 all species →	GRASP55_65	GRASP55/65 PDZ-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007583 all species →	Family	GRASP55/65	Interproscan
IPR024958 all species →	Domain	GRASP-type PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12893 all species →	GOLGI REASSEMBLY STACKING PROTEIN GRASP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26797	GORASP, GRASP65_55; golgi reassembly-stacking protein	-	Autophagy - animal	ko04140	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.