Gene detail

Detailed information of PFX30588.1 in Stylophora pistillata

Genomic Location: Spis.scaffold48:170866...183120
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ZW10

ATGGCGGACGAAGAAGAAAAGGAAAATGTTACAGCTAGCGCGACTCACAAAAAGCCGAAGCATTGTGCAAGTCTTGTCACGGATGTGCTTTTGAAGTCTGGTCGTCTAGAAAAGGAAGACATAAACTCATGTGTAAAGAAAACATTGCAGAAAGCAGAGGAAGTGAAGGCAGAGGTCCTGCAGGCAATCTACAAGGAATACACATTTGATGAATTTTTAGATTTCAGTAATTCAACCTTTGAAATGAACTGGAATGTAAACAACCTTCTTACTGAAATTCAAAATGTTTCTGGTAGATTGAAGAGTACTGTGGAAGGTTCTCTTGATGCTGCCGCTCGGGAACATGGTGACCTTGTGAAACATCTGAGAGAGACTGAAGCCATTGCAGAGCTCCTCAAAAGACTCCATAAGATCCATGAAGCATTGGATGCCTTCCCTGGGGAGCTTAGTAAGGCTGCATATTATAATGCAGCTAAGCTTGTGCAATCTGTGAAAGAGCTCCTGTCTGATTTGCCTAAAGCTGGCCAGGAAGGACGGATTTTCATTGCCCTTAGAGAGGAATGGGAAAGACAGAAAGCTCAACTGACAGCAACACTGGAGAGGGTGTGGACCAAAAGTATTGCATGGACAACACCTACTACAGCATCACTAGACAACAGGCAGGGACATCTGAAAACACAACTCAAGCTAGACCCAACTGGCTGTTCAATGAGTACTGTCCTTCAAGCAATGGAAGTACTTGGTATTTTGGAAAAAAGATTGAGAGCATTTGGAAAGAGGCTGGTTCAGTTTATATTTCGTCCCATAATACTGTTTCCCAGCTTAAAGCCTCAAGTTGATAAAACAAAACAAGAAACTACAACTGTGTCATTTGCAAAGGAAAGTGGAAAAAAGATCATTGATCCTACCTTGCTGTATTCAAAGTTCTCAGAAATCCTGGTTGTTTTGAGAAACTTCTTTGATGGAAGTAGGAAAGAAGATGAGGAAAAGTCAAAGGAACTCAATGTGTCAAGTTCTTTACTTTTTGCTAAACTGGCACGCCGTTCCTCGTATAGTATGGCTTTCAAGATAAAAGTTATCGCGGAAGCTGAAGCGGTAGAAAACAACTCGGAAATCGCTCGAGAATATGGACTAAGCGAGTCCATGGTACGACGCTGGAGAAGAGACCAGGCGACTATTCTTTCCGGAGAGCTGAAGATGTCTGCAAAACGTGCGACGATGGGCCGTTTCACTCCGAAATATCCCGAACTAGACCAGCAAGTGATGGAGTGGTTTTCACAGCAAAGAGAACAAGGTATTGCGGTGAGTGGATTGATCCTTCGCCTTAAAGCTAAAGAGCTCTCCGATGATCCTGCTTTCAAAGCTTCCCGTGGATGGTACGAGAAATGGAAACGACGCCACTCGGTCAGCATGCGAACCAAAACAACTCTGGCCCAGCGATTGCCCGCCGATCTCGAAGAGAACATTGTGTGCTTTCATCGCTTCGTCATTGCAGCAAGAAGACGCGCCGACTACCCTTTATCCCGCATCTACAACATGGATGAGACACCCATGCGTTTTGAGCTGCCATCGAACCGAACACTGGAATTCAGTGGAAGCCGAACAGTGCCAGTAAAATCTTGCGGAGCGGAAAAGCGGAGCTTCACCGTCGTTCTTGCTGTTGCTGCCGATGGAGCAAAGGTGCCACCGAAAGTCATCTTCAAAGGCGTCCGTGAATATGTATGGCCTGATCTGTCAGAAACTATTATTGCAGAGTGTCTCAAGAAATCAGTTCCTACCACAAGTGCACAGTTGGAAAAGTACCAAGATGTCATTAAAACCACTGAGGAATTTGAGATAAATCTTGTGTCTTTAGGTTTAGTCCCTAAAGGAACAAACAATCTCACATCATATGCAAAGGATGTTGGTATTCACTTTGGGAACAAAAAGTGCCAAGATCTTCTTGTCAGGGCACGTGATCTGATGAAAGATGACATTCACAACACTGTGTTGGTGGACAGCAACAAAGACAAGGGGGTTCTATTAAGTTTGGGTGATATACAGAAAGCATTATCAGATAACAAGAAAGGAGTCAAGCATGAACCATTGCAGAGAGATCCAACCAACACCCTAAGCAAGTTTACATTCTGCCTTCCATCCTGCCGAATCAGTGAGAGTACAGAGAAACTGATGAATCTGGCTTACAAAACTTTGATAGAAGCAACACAGTCCACCCCACAATGTGCTATTCAGCTCTTCTACAGCGTTCGGAACATGTTTGAGTTATACTGTAACGTTGTACCTACCTATCATCAAAAGCACTTGATTTTACATATCTTGACAAATCTTGGAAAAGTATGGAATGGTATTTTACCAGTTGATATTTACTGTCAGTCCTTGGGAGCCTTATTTGATGACGTCCTTAAAAACATAGCATGGGAAGTTATCCAGCTTGAGGATATTTCAACAGAAGAGGCACACCAGCTTCACTCATTACTCTCCATACTTGTTGAGCGAGGGTCTGAAATATTCCAAAATACAGAGGAAGAAGCCTCAGAAGCAGTAGAAAACAGCTGGAACTTATGCACAGTTGTACCTCACTGGATTCGTTACAAAGAGCTGATAGCGATATTGGAAGCCAGTTTACAAGACATTGTGGATAGATGGGCAGATGGAAAGGGTCCCTTGGCACATGAGTTTACAGCTCAAGAAGTGAAAGGCTTGATAAGGGCCCTCTTCCAGAACACCGACCGAAGAGCAGCTGCGTTGGACAAGATAAAGCCAGTACAAGCATAG

Transcript

rna-Spis4613_mrna

atggcggacgaagaagaaaaggaaaatgttacaGCTAGCGCGACTCACAAAAAGCCGAAGCATTGTGCAAGTCTTGTCACGGATGTGCTTTTGAAGTCTGGTCGTCTAGAAAAGGAAGACATAAACTCATGtgtaaagaaaacattgcagAAAGCAGAGGAAGTGAAGGCAGAGGTCCTGCAGGCAATCTACAAGGAATACACATTTGATGAATTTTTAGATTTCAGTAATTCAACCTTTGAAATGAACTGGAATGTAAACAACCTTCTTactgaaattcaaaatgtttctggTAGATTGAAGAGTACTGTGGAAGGTTCTCTTGATGCTGCCGCTCGGGAACATGGTGACCTTGTGAAACATCTGAGAGAGACTGAAGCCATTGCAGAGCTCCTCAAAAGACTCCATAAGATCCATGAAGCATTGGATGCCTTCCCTGGGGAGCTTAGTAAGGCTGCATATTATAATGCAGCTAAGCTTGTGCAATCTGTGaAAGAGCTCCTGTCTGATTTGCCTAAAGCTGGCCAGGAAGGACGGATTTTCATTGCCCTTAGAGAGGAATGGGAAAGACAGAAAGCTCAACTGACAGCAACACTGGAGAGGGTGTGGACCAAAAGTATTGCATGGACAACACCTACTACAGCATCACTAGACAACAGGCAGGGACATCTGAAAACACAACTCAAGCTAGACCCAACTGGCTGTTCAATGAGTACTGTCCTTCAAGCAATGGAAGTACTTggtattttggaaaaaagattGAGAGCATTTGGAAAGAGGCTGGTTCAGTTTATATTTCGTCCCATAATACTGTTTCCCAGcTTAAAGCCTcaagttgataaaacaaaacaagaaactaCAACTGTGTCATTTGCAAAGGAAAGTGGAAAAAAGATCATTGATCCTAccTTGCTGTATTCAAAGTTCTCAGAAATCCTGGTTGTTTTGAGAAACTTCTTTGATGGAAGTAGGAAAGAAGATGAGGAAAAGTCAAAGGAACTCAATGTGTCAAGTTCTTTACTTTTTGCTAAACTGGCACGCCGTTCCTCGTATAGTATGGctttcaagataaaagttaTCGCGGAAGCTGAAGCGGTAGAAAACAACTCGGAAATCGCTCGAGAATATGGACTAAGCGAGTCCATGGTACGACGCTGGAGAAGAGACCAGGCGACTATTCTTTCCGGAGAGCTGAAGATGTCTGCAAAACGTGCGACGATGGGCCGTTTCACTCCGAAATATCCCGAACTAGACCAGCAAGTGATGGAGTGGTTTTCACAGCAAAGAGAACAAGgTATTGCGGTGAGTGGATTGATCCTTCGCCTTAAAGCTAAAGAGCTCTCCGATGATCCTGCTTTCAAAGCTTCCCGTGGATGGTACGAGAAATGGAAACGACGCCACTCGGTCAGCATGCGAACCAAAACAACTCTGGCCCAGCGATTGCCCGCCGATCTCGAAGAGAACATTGTGTGCTTTCATCGCTTCGTCATTGCAGCAAGAAGACGCGCCGACTACCCTTTATCCCGCATCTACAACATGGATGAGACACCCATGCGTTTTGAGCTGCCATCGAACCGAACACTGGAATTCAGTGGAAGCCGAACAGTGCCAGTAAAATCTTGCGGAGCGGAAAAGCGGAGCTTCACCGTCGTTCTTGCTGTTGCTGCCGATGGAGCAAAGGTGCCACCGAAAGTCATCTTCAAAGGCGTCCGTGAATATGTATGGCCTGATCTGTCAGAAACTATTATTGCAGAGTGTCTCAAGAAATCAGTTCCTACCACAAGTGCACAGttggaaAAGTACCAAGATGTCATTAAAACCACTGAGGAATTTGAGATAAATCTTGTGTCTTTAGGTTTAGTCCCTAAAGGAACAAACAATCTCACATCATATGCAAAGGATGTTGGTATTCACTTTGGGAACAAAAAGTGCCAAGATCTTCTTGTCAGGGCACGTGATCTGATGAAAGATGACATTCACAACACTGTGTTGGTGGACAGCAACAAAGACAAGGGGGTTCTATTAAGTTTGGGTGATATACAGAAAGCATTATCAGATAACAAGAAAGGAGTCAAGCATGAACCATTGCAGAGAGATCCAACCAACACCCTAAGCAAGTTTACATTCTGCCTTCCATCCTGCCGAATCAGTGAGAGTACAGAGAAACTGATGAATCTGGCTTACAAAACTTTGATAGAAGCAACACAGTCCACCCCACAATGtgCTATTCAGCTCTTCTACAGCGTTCGGAACATGTTTGAGTTATACTGTAACGTTGTACCTACCTATCATCAAAAGCACTTGATTTTACATATCTTGACAAATCTTGGAAAAGTATGGAATGGTATTTTACCAGTTGATATTTACTGTCAGTCCTTGGGAGCCTTATTTGATGACGTCCTTAAAAACATAGCATGGGAAGTTATCCAGCTTGAGGATATTTCAACAGAAGAGGCACACCAGCTTCACTCATTACTCTCCATACTTGTTGAGCGAGGGTCTGAAATATTCCAAAATACAGAGGAAGAAGCCTCAGAAGCAGTAGAAAACAGCTGGAACTTATGCACAGTTGTACCTCACTGGATTCGTTACAAAGAGCTGATAGCGATATTGGAAGCCAGTTTACAAGACATTGTGGATAGATGGGCAGATGGAAAGGGTCCCTTGGCACATGAGTTTACAGCTCAAGAAGTGAAAGGCTTGATAAGGGCCCTCTTCCAGAACACCGACCGAAGAGCAGCTGCGTTGGACAAGATAAAGCCAGTACAAGCATAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01527 all species →	HTH_Tnp_1	Transposase	Family	Interproscan
PF06248 all species →	Zw10_N	Centromere/kinetochore Zw10 N-terminal	Repeat	Interproscan
PF20666 all species →	ZW10_C	Centromere/kinetochore protein zw10, C-terminal	Repeat	Interproscan
PF20665 all species →	Zw10_middle	Centromere/kinetochore protein zw10, middle domain	Repeat	Interproscan
PF03221 all species →	HTH_Tnp_Tc5	Tc5 transposase DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002514 all species →	Family	Transposase IS3/IS911family	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR006600 all species →	Domain	HTH CenpB-type DNA-binding domain	Interproscan
IPR009361 all species →	Domain	Centromere/kinetochore protein zw10, N-terminal	Interproscan
IPR048343 all species →	Domain	Centromere/kinetochore protein zw10, C-terminal domain	Interproscan
IPR048344 all species →	Domain	Centromere/kinetochore protein zw10, middle domain	Interproscan
IPR046362 all species →	Homologous_superfamily	Zw10/DSL1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12205 all species →	CENTROMERE/KINETOCHORE PROTEIN ZW10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004803 all species →	Molecular Function	transposase activity	Interproscan
GO:0006313 all species →	Biological Process	DNA transposition	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000775 all species →	Cellular Component	chromosome, centromeric region	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0007094 all species →	Biological Process	mitotic spindle assembly checkpoint signaling	Interproscan
GO:1990423 all species →	Cellular Component	RZZ complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX30588.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.