Gene detail

Detailed information of PFX31010.1 in Stylophora pistillata

Genomic Location: Spis.scaffold42:117105...130325
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis4166_mrna

tttatataaaaagcctcaaaaattaaaaatggcgaccagttttaaaaagaaaagtggtcGCGGACGCGCTGTTTATCCCCCAGGAACAAGGCCATCTCTCCATAATAATCAACTTTTAGTATCTTCTGGAGTTCCATCTATGGACAACGTTATAGgaGGTGGAATAGCTGTAGGCACCGTTTTTATGGTTGaaGAAGACACTTATGGTTCTTATGCACGACAACTTTCAAAGTATTTTCTGGCTGAAGGAGTGATATCAGGTCACTCAATCTTCTTGGCATCTGCTGAACCAGAACCCAATAATATTTTGATGGATCTACCACAGCAAGTTGACAATAAAGAAAGCAAATCATCTGCTCATAGTGCACATGAACCAGGGGAAGGTTCTTCACCAAATCAGTCCATGAAGATTGCTTGGAGATATCAGAATCAACCAAAGTTTGAGTCATCCCCATCATCTGGTACATTTGGACACTACTATGATTTGACCAGAGTTATGGACAAAACCAAGCTAAGCTCTGTTCCTATTCAAACCTTCATTGTGACCAGTGAGATTGCAAAGTGTCTCAATTGCACAGAGGAGAGAAAAACTGGTGAGAGTAATGTGTACAGAACGCTTATCGCTAGAATAAATTCTGCAATCAAGGAAGGAGGATTCACAACCGCTGACAAAGGGCTTGAGAACAGAACAATTCTCAGAATAGTTCTTCACGGTCTTGGCTCTCCACTCTGGGGAGAGGAGGAACACACTGGCAATGAAATAAACCCCACTCTGACAAGGTTTCTCTTCCAGTTACGGGCTACACTCCGTTCTTCTTTTGCAGTCTGCTTTGTTACGGTCCCCACCCATCTGTTTCagGACCCAGCCCTCACTCGGCGTGTAGAGAGATTCTGTGACACGGTAGTCAAACTGGAATCATTCACCGGCTCTGAGAATGAAACGAACCCAGTTTACAAAGACTATCATGGTCTCTTTCACATTGTTCGCTTGCCTCGTTTGAACTCCTTGGTGTGTCATATGCCAGATTCTTTCGACCTCGCTTTCAAATTGAGGCGAAAGAAGATGACTATTGAGAAGCTTCACCTTCCTCCAGAACTTTCAGAAACAGCGAATAGGACGCAGGAAGATTCAGTCCGAGGGAAGCCTGGATCCCTCTCGTGCCAGTCCATGGTCACCAAGAACCGTCTGGATTTTTGACCCGCGCGGTAGCTGAGGACATGCGCACCATCGGCGGAGAATGACACCAGCCAAGGGAACAGTCAAGGTAGCAGTCAGTGGTTGTTTTGGAGTATATACTGTGGATTGCTCACGTTTGAAGTAAATACGGCGAGTGTCATCTTTATTGTACATCTACTGtgcattaaagaaaaaaaggaaatagtcaAGGACTTTCAGGTTGTCTCTTAAAATATTCCGACTCGGGTGTAAAAGGCGCCTCGTACTGAAACGAAGCATACATCGCTCAAATATTCAACGTCTTGATTACGAGATGACTCTGTGAGGCATTCAATTCCTGCACCATTTATTGAAATATAAAAGAGTAGCGATTTATGGCGCGCAAGAGATATTTGAGTCTTTTTCGTGATGTTGGTCTGTGCCTCCTTTTCAAGGCTTCAAAAGAAGTCACAGCTGTCGAGAGGCGCTCGAAGCCTGCAATGTACTTTGCatttgttttggtaatttttggCAAATGGCATGCTAAAATGGAATCGTTTAATGACCAATGAACTCCACTCTTCCTCGTTTGAAGGGTAAATAATTTCTAGTGACCTTGGTACATCATCAGCCAAGTTCGCCTACTGCCAGATTTTAAgtgcttttaattttgtaaaaccATTACAACTTTTATTATTGTTGTGTTTCAGCCCGATGACTAACCACTTCCTTTTTTACTGTGTAAAAATTGTGTTTGAAAAGCCATCAGCCGCTAAGTGCTGCCATTTTGTTAAATTGCGAATACTGAATAATTCTCGATAGAATGTGTTCGTTTTCCGCTCGAAGGCTTCGCTTTTATTAGTTGTGAATTGGGAACACGAAAAGGCGTGCCTTTGACTCGAAAAGCCCGTCTTAATGGCAATTTAACGTAAGTATCAGcaagctaaaaactgaaaaaacgtAAGAGGTTGCTCACCTTGTTCCTTTGCGGCAGCCATTGTGGGTGGTATCGTCGGAACTTTCAGCGAAATTTCTATTCTTTTAGACACATTGTCGTGCTCCTTTATGAAAGAGGTCAAGGTTTATTATGATAAAcagaaaagcaataaaaagtcgt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05625 all species →	PAXNEB	PAXNEB protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008728 all species →	Family	Elongator complex protein 4	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12896 all species →	PAX6 NEIGHBOR PROTEIN PAXNEB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008023 all species →	Cellular Component	transcription elongation factor complex	Interproscan
GO:0033588 all species →	Cellular Component	elongator holoenzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11375	ELP4; elongator complex protein 4	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.