Gene detail

Detailed information of PFX31059.1 in Stylophora pistillata

Genomic Location: Spis.scaffold41:667620...689513
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

med24

ATGGTGGTCAACACGGAGATTCTTCTTCAAGCTTGGAGGGAAAGATGGTCTCCATTACGGTGGCTAGTAGAAGTGAAAAAGCTGGCTGGGAAAGATAACGAAGAACTTCAGGACTTGGCAGAATGCCTTGTTCAACAAGCTACATTTGGCAGTACACCAAGCACTTTGATATTATCGTATCTTAACCATGGGATTTCCACTAAGGTCATTTCATGTTCATCAGCTTTGACAGCAGTTCATCAGTTTCAGAATATTATAAAACACAAGTGCTTATCAGCTCTTCTTGATCTCCTGCTTAGTTTCATTCCAACCATAAGTGGTCCAGATAGTGATGAGGAATGTCTGAGGCTAGCAGTTTCTTTCATCAAAATTTTGTATTGGCTTCTTATTGTTTCTACAAGGTTACTCAAGTTATGTATAGAGTCTCTACGTCTGTCTGGAGGTATCAATCTCCCATTTCACTCGGCTAATATTGGAAAATGCCACAGAGCATTTGGACAGCTCATAGGTTCATCATCTTACAGAGCTATGGTTATTGTGGGAAAGATGGAGGATCAAGTCACAGCACTGGAATTAGACAGACAGTTGCAGGCACATCTGAAAGACCTTTTGATGACCCAACCTGATGGAGTAGTTCCTGAGGTACAGCTCTACATCAAAGAACTCATGGTTAATTTTAGCAGATTTCAGAGCTTGAATTCTTCATCAGGGAGTGGTGACATCAGTCCGGGGCATGTTCCTAACATGCCTATCCAGATAATTACTCAGTTCCAGGTCGTAGTGAGTCCTTTTTATACTCCACATCAAGTTGCTGATGTGATGGAAAGCACTATGCATACTCAGAATGTTGCTAGGCATCAGCTATACTTGGAATTTCTGAGATCAGCCTTAGTTGGCCTGCTAGGAGCTCCTGAGAAATCAATGGAAATGATACTGTGGACAGGGTTTTTATTCCTGAAGGTCCCCATGGTGATTCGCCTGTTGGAGTCTAGATCTCAGCCTCCCATTCAACTTCAGCCCAGTCCTGTGGAACACTCTGCTGCACATACTGCCTTTCAACAACTGCTACAGTTTGCTCCCTTGCTGGATGATGCTGACAAGAAGTGCAGATGTAACTGTTACAAAGAATTAATCCTGCAGTACTGCAAAGACCTCAATCAACAGGTGGTTGATAGGATTGGACAGCTCATCTCTCAAAGACTCTTGTCAGATGAAGTACAACACTTGTTAAGTATTCAAGCATCTTATAATCATCCAGCCCAGCAGGTCCAAGATGAAGAAAGCAAAATAATGGAAATAATCATGGCTTTGGAATCTGATCTTAGCAGCAGAGATGAGAAATTCCTTAACCCTCTGTTAAATGTGGAGAAATTTAGATGGATGACGGTTGCTGCAGCAAGTGTGGGAAAACTTCCAAACCTTATAAACGGCCTTGTCAAAGTTACAGAACAAACTCTTCGCCCTGCTACAGAAAAAGAGGACGTTAAAAAAGGAAGCATCAGAGGGGAGCTATTTAACACGTCTTTTTTGTTATTGTGTCATATTGGACAAGTGTATGGCTCGAAGGTTATATCTGAAGTTGCTAAGAATCGATCACCGACTCCGTTTGTGGTTCAGTGGATTTTACGTCACATACCGGACATTGACAAGTGGAGATCGTTTATACCTGATACACAACACACACCCAATCACGCAGCCGTCAACGAGTTGCTGAATCAGTTCTTTAGCAATTCAGCCTTCCCTGCAAGTCAAGCTAATTGGGATGAACATTGTACGAATGTATCCAGTGCCTTGCATCACGTGTTAAACGCGTCGCAGTGGGAATCAAAAGCAGTACCTTCCGATCATCTACAGAAATTGTGCGAACTCCTCAAGTACGAGGCACCCGCATTGGCGGTTTGTGCTTGTTCGTGGAGCTGTGGACACATTTACACCTTAACCGCGGAGGAAAGAAAGCATCCTATGCGGCTAGTTGGACTCCTTGTAAAGCCTGTGAATCCAAGAGGATTTTCCCAGGGATTTGTGGACAGGTGCGCGATGTTGTGTGAAGTTATGAAGACGATGTCATCCAGTATTGAGGGTAAAGACAACACGTGGGACATTGACAATCCGATATGTAAAGGCGAGCCTGTGTCAAAGACCCTTGCATCATTGTTCACAAGCGTTGTCAAAGCACGGCAGCTGAGCAGTAAGACACTTAAACGGTTCAGACATATGTTAATCATGGGAGGAAATGAATGGTTTATTTACTGTATAATCCAGGAGGTGTTAAAGTGCAGCCGACATCGAGACATCCTAATGGCAGCGGACTTGGCGAGTTGTCTTTTAACATTTGACTCCGAGAACCTTGTACCTTGCTTTCTTGAAAAAGTTCTACCACTGGTTATGAATCACGTAGAAGCTGAAACAATGTTAGAAGACCCAAAGGGTTGGGCCATTGCTCGGCTCATGGCACACGCTGTGTGTTTGGGAATGACCATAGAACATACGCGGTCGAAAGGAGATTTAACTGATGGCGAAATCACACGTCCGGCTAAAATACAGAGGCTGGACAGTTTTCCCTCTCTCTACAATTCCACGTCTTCATCGCGCGTTCAACAGACTCTTGTTCACCTTTGTGAGGATTTTATTGCCACCATTAAAACCACCGAGGTTGGACCGGTTCCAGCTCTGTTGGTGTCTTTCCTTCAACAAGCTGTCGCCAGTATTGGAACCATCGTTGGGCCACTATCGGCTTGTCTTCCTGAAGATTTGGTGAAGGAAATATTGGAGTTATCACCCAGTCTGCAAAACACACCTGATGTACTTTTGGGTTTGTGTAACATGAAGACAACAGAAGGTCGACAGTTGTGTGCCAAGGCTTTGTGTAGTAGTATTTGA

Transcript

rna-Spis4138_mrna

aaaatggtggtcAACACGGAGATTCTTCTTCAAGCTTGGAGGGAAAGATGGTCTCCATTACGGTGGCTAGTAGAAGTGAAAAAGCTGGCTGGGAAAGATAACGAAGAACTTCAGGACTTGGCAgAATGCCTTGTTCAACAAGCTACATTTGGCAGTACACCAAGCACTTTGATATTATCGTATCTTAACCATGGGATTTCCACTAAGGTCATTTCATGTTCATCAGCTTTGACAGCAGTTCATCAGTTTCAGAATATTATAAAACACAAGTGCTTATCAGCTCTTCTTGATCTCCTGCTTAGTTTCATTCCAACCATAAGTGGTCCAGATAGTGATGAGGAATGTCTGAGGCTAGCAGtttctttcatcaaaattttgtaTTGGCTTCTTATTGTTTCTACAAGGTTACTCAAGTTATGTATAGAGTCTCTACGTCTGTCTGGAGGTATCAATCTCCCATTTCACTCGGCTAATATTGGAAAATGCCACAGAGCATTTGGACAGCTCATAGGTTCATCATCTTACAGAGCTATGGTTATTGTGGGAAAGATGGAGGATCAAGTCACAGCACTGGAATTAGACAGACAGTTGCAGGCACATCTGAAAGACCTTTTGATGACCCAACCTGATGGAGTAGTTCCTGAGGTACAGCTCTACATCAAAGAACTCATGGTTAATTTTAGCAGATTTCAGAGCTTGAATTCTTCATCAGGGAGTGGTGACATCAGTCCGGGGCATGTTCCTAACATGCCTATCCAGATAATTACTCAGTTCCAGGTCGTAGTGAGTCCTTTTTATACTCCACATCAAGTTGCTGATGTGATGGAAAGCACTATGCATACTCAGaATGTTGCTAGGCATCAGCTATACTTGGAATTTCTGAGATCAGCCTTAGTTGGCCTGCTAGGAGCTCCTGAGAAATCAATGGAAATGATACTGTGGACAGGGTTTTTATTCCTGAAGGTCCCCATGGTGATTCGCCTGTTGGAGTCTAGATCTCAGCCTCCCATTCAACTTCAGCCCAGTCCTGTGGAACACTCTGCTGCACATACTGCCTTTCAACAACTGCTACAGTTTGCTCCCTTGCTGGATGATGCTGACAAGAAGTGCAGATGTAACTGTTACAAAGAATTAATCCTGCAGTACTGCAAAGACCTCAATCAACAGGTGGTTGATAGGATTGGACAGCTCATCTCTCAAAGactCTTGTCAGATGAAGTACAACACTTGTTAAGTATTCAAGCATCTTATAATCATCCAGCCCAGCAGGTCCAAGATGAAGAAAGCAAAATAATGGAAATAATCATGgCTTTGGAATCTGATCTTAGCAGCAGAGATGAGAAATTCCTTAACCCTCTGTTAAATGTGGAGAAATTTAGATGGATGACGGTTGCTGCAGCAAGTGTGGGAAAACTTCCAAACCTTATAAACGGCCTTGTCAAAGTTACAGAACAAACTCTTCGCCCTGCTACAGAAAAAGAGGACGTTAAAAAAGGAAGCATCAGAGGGGAGCTATTTAACACGTCTTTTTTGTTATTGTGTCATATTGGACAAGTGTATGGCTCGAAGGTTATATCTGAAGTTGCTAAGAATCGATCACCGACTCCGTTTGTGGTTCAGTGGATTTTACGTCACATACCGGACATTGACAAGTGGAGATCGTTTATACCTGATACACAACACACACCCAATCACGCAGCCGTCAACGAGTTGCTGAATCAGTTCTTTAGCAATTCAGCCTTCCCTGCAAGTCAAGCTAATTGGGATGAACATTGTACGAATGTATCCAGTGCCTTGCATCACGTGTTAAACGCGTCGCAGTGGGAATCAAAAGCAGTACCTTCCGATCATCTACAGaaaTTGTGCGAACTCCTCAAGTACGAGGCACCCGCATTGGCGGTTTGTGCTTGTTCGTGGAGCTGTGGACACATTTACACCTTAACCGCGGAGGAAAGAAAGCATCCTATGCGGCTAGTTGGACTCCTTGTAAAGCCTGTGAATCCAAGAGGATTTTCCCAGGGATTTGTGGACAGGTGCGCGATGTTGTGTGAAGTTATGAAGACGATGTCATCCAGTATTGAGGGTAAAGACAACACGTGGGACATTGACAATCCGATATGTAAAGGCGAGCCTGTGTCAAAGACCCTTGCATCATTGTTCACAAGCGTTGTCAAAGCACGGCAGCTGAGCAGTAAGACACTTAAACGGTTCAGACATATGTTAATCATGGGAGGAAATGAATGGTTTATTTACTGTATAATCCAGGAGGTGTTAAAGTGCAGCCGACATCGAGACATCCTAATGGCAGCGGACTTGGCGAGTTGTCTTTTAACATTTGACTCCGAGAACCTTGTACCTTGCTTTCTTGAAAAAGTTCTACCACTGGTTATGAATCACGTAGAAGCTGAAACAATGTTAGAAGACCCAAAGGGTTGGGCCATTGCTCGGCTCATGGCACACGCTGTGTGTTTGGGAATGACCATAGAACATACGCGGTCGAAAGGAGATTTAACTGATGGCGAAATCACACGTCCGGCTAAAATACAGAGGCTGGACAGTTTTCCCTCTCTCTACAATTCCACGTCTTCATCGCGCGTTCAACAGACTCTTGTTCACCTTTGTGAGGATTTTATTGCCACCATTAAAACCACCGAGGTTGGACCGGTTCCAGCTCTGTTGGTGTCTTTCCTTCAACAAGCTGTCGCCAGTATTGGAACCATCGTTGGGCCACTATCGGCTTGTCTTCCTGAAGATTTGGTGAAGGAAATATTGGAGTTATCACCCAGTCTGCAAAACACACCTGATGTACTTTTGGGTTTGTGTAACATGAAGACAACAGAAGGTCGACAGTTGTGTGCCAAGGCTTTGTGTAGTagtatttgaagaaaaattcgcCCAAGGGATTGGAGAGAGTCCTGTGGCATTGATGGTGCTAAGGTTTGTTTGCGTAATTGACTTAAACAGAAGTCAAGAGAAGCAGTGGAAATTGTTGACGCGAAAGCTGTCAGCTGATGCGCGTTCCCCCCGGAAACAGAAACTCTGCATGGGATACAACGATTTCAAGGAAACAGATCGAAATTTTGAAGGCAAAAAACAACACatacacaaaaacaacaaccacaacaagaCTGAGCAGCAAAagtgaaagtttatttcaaagaagtAGAGTGTGGGAagagagaaattgaaaacaacacCTCTAGGTACAAGGGTCGGAAGAGAGAGGACTGAAAACGAGACCTCAAACTACCAGGGTCGGAAGTGATAGGACTGAAAACCAGGGCTGGGAAAGGTCTGACAAATAGGCCAACTCTCAGTTACTCCAAAGTGTCCATTTCAGAACGGGATGAGAGGGGAGCCATCGatataaaaatgatttcttatctcatacaaattaaactcatttcgCAAATTAGGTCGTGGTTATTCATCGTGTTAAATAACACTTAAAAGGGAAATGTAATCATTTGTCGCACGATGTGAGACATTTAACTTCTGTCGTGTTTTGGATTTACTATTTATTCTATCGTTTACGTTCATTGCTCGCGTTGCAGAAATCAGGAAAAATGAGAACTAGAGATTGTAAATACATatatacatttttaaatgatatcTTTGTACAAGAGAAGTAAAATATG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11277 all species →	Med24_N	Mediator complex subunit 24 N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021429 all species →	Family	Mediator complex, subunit Med24,	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12898 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 24	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15167	MED24; mediator of RNA polymerase II transcription subunit 24	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.