Gene detail

Detailed information of PFX31067.1 in Stylophora pistillata

Genomic Location: Spis.scaffold41:596879...623774
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

dctn1

ATGTCGGGGCCCAATGCAAAGACTGGAATGAGAGTGGAAGTTGTTGGGAAAGGCCTTGTGGGAACCGTGGCTTATGTTGGAGCTACCATGTTTGCCTCTGGAAAGTGGATCGGAGTTATTTTAGATGAACCAAAAGGCAAAAACGACGGTTCAGTGCAGGGAAAAGAGTATTTCAAATGTGCTGAGAACCATGGAATCTTTGTGCGTCAGTCTCAAATAGCTGTTCTTCAGGATGCACCAACCTCCCCATCACCTCAGCGTGGATCGTCCACTCGCAGCAGCATTGGTGGAGGAACTTCCATTCCTTTACCATCATCAATGAGGAAAGAGAAGTCTTTTGGGTCAAGGGGTTCCTTAGAGAATGTTGGTAGCAGACCATCGCCACCTTCCTCTAGGTTAGCAACACCAAAAACCAGCACAACTACTGCTCCTGAGCTATCATCAAACAGTTCCCTGAGCAAGATTCCAGCAGCTGCTTCAACTCCTTTGCCATCAGGCCCAAGAAAGATGTCTTCAGGACCAGCAATATCAGCTGATGAGTATATGGCTCTTCAAAAGAAGGTTTTAGAAAAAGAAAAGGTTGTGGTTGATTTAGAGGAGAAACTGGAGACATTGAAGAGTAAAAGACAAGAGGACAAGACCAAAATGAAAGAACTGGAGAAAGCAAGGATGCAATTGGAGCAGATGCAAGAATATAAGACAAAATGGCAAGAAGCACAGAGAGATTTACAAGCTCAACTGAATGTGGCAAAAAAGGAGCTCAAAGAGATCACTGAGAATCGCCAAGAACACAGTGAAGAATTGACAGAGCTTCAAGAAGCTGTGGAAATGGCAACTCTGGATAAGGAGATGGCTGAAGAAAGGTTGGAATCCCTTCAGCAAGAAAATGAGCAGTTGAAGGACAAGTTGGAAGAAGTTACTCTTGACTTAGAAATTTTGAAGAATGAAGTTAGTGAAGGAGGAATTGAAGGAGCTGCGGCAAATGCCCAGGTCAAACAACTTGAGCAACAAAATAGTAGGCTGAAGGAAGCAATCATGAGACTCAAAGAGGTCCAGGCAAGTGATAAAGCAGAGATGCAGTCCTTGCAGAAACAAGTCAAAGATCTGCAGAGTGGAAACACCACCCTTCAGAATGAAAGGGATAGGCTCTCTGAAGCTTTTCAGGAAGCTGAAACGGCTTTGGCTGAACTCAAAGAACAGGTTGATACTGCATTGGGAGCTGAGGAAATGGTGGAAACTCTCACTGATAAGAACTTGAGCTTGGAAGAAGAAATTGTCACTCTAAGGGAGAATGTGGCTGACTTGGAAGCTCTCAGAGATTTGAATGAAGAACTTGAGGAAAATCACCTTCAAACGGAACATGACCTACGAGAAGAACTGGAAATGAACAACAACAAAGTTCGTGAGATGGAGCGTAAACTAGAGGCAGCTCAGGAAAGTATTGGAGATCATCAGCAAACGATTGTTAAGTTCAGAGACCTGGTGGCTAAACTTCAGGAAAATAACCGAGCTATGCAGGTTCAGCAAGAAGACTCAGAGAAACAAAAAGTCATCGACATTCCTTCACCTGAAATGATTGACTTTAAAGTTAAGGCAGCTGAGTTGAAGACCTATACCAAGACCGTGGAGAATGAATTAAGAAAGTTTGATCTGCAGCAGGCAAATGAAAAGATAAAAATGCTTCACTCATTCCTGCCTGAGTCATTCTTAAGGAGAGGGGGTGACAATGAAAGTGTCTTATTGCTGCTACTCATTCCACGTCTGAGTTTCAAGACTGAATTGTTGCATTCTCAGTTAAGACAAAAGTACGAGATTGCAGAGTGTCTGGAGGATCCTGCCAAGATTCAAAGTGAAGCTGGTGAAGGACTAAGTTTTGCTTCAGGACTGATTTACCGGCTGGCAGTTCTCCAAGCAGTTGTGAAGAATATGAAGAGAGCTCTTGACAAGTGTGATGCTGGTTTGTTCAACAAATTGGTTGGTATATACCCTGAACTAGCAGCGCACGAGAGGGCTGTGGATGGACTTATTGACTTGTTCAAGAAAGACCAGTTAGATGATACAGTTGCCATGGAACCCTTGGAGAAGGCAATTCATTACTATACTACCATGGTTCGATTCCACTTGGCTGGTAACCCTGTGTCACATTCTGAGTTCTTGTCAGACGAATTGAAGATCTTCACTGCTGGAACAGAAGGTGCCACCATAGAGATCGAGAGGCTGAAGCAATATAGTAAGGATTGTGATGAAGGAAGTGCCTATGGCGAACTTGTTCAAGAAATGGAACTGAGAAACGTGGAAATTCAGCAGCTTTGCAGAAAGATCAAAAGAAGAATGCCAGAAGATCAAACAAGTACCCTGTCGTTTTCTGATAAGATTCAAGAGTCACTTATTGAATGCGCCAGGCAACAGAACTCGGAACTGAAATTCTGCCAGGAACTTACTGCAGCCGTAACACAGAAAGCTTCTGGTCTAGGTGACAATGAAAACTTGCTGAGTGGTCAGCTTGACGAGTTAGCAAGTGATGTGGCAGTGCTGGTGTTTGAGACAGATGAAGTACCATGTAAAGATATAGTCAGTCAAACTTTCCATGAAGTCATTTCCTTCCTGTACTCGTTTGTGAGCAAAATGCAGGAAGGTGATTACGATGCTGAACCTAAAGAAGAGTCCAAGGCGGATCCTCCCTATCTTCAGCGCGCAAAGACCTTCAAGTCAGAATTATTTGATTCGGCCGGCGTGGAAGAGAAACTCCTTCAGAAGGAAAATGAGTTCATGGACCTCAAGAAAAATATGAAACTGAAGAACGAGGAACTGAGTCAGGCTAACATAAGGATTGGATTATTGGAGAAGCGTCTTGAAAACATCAACAAAGAGGCTGATGCACGAGTCGAAGCTGCAAATCGAAAAATGGAGCAATCTACTGAGGACTTTGCAAGAAAGAAAAAGGAGTTCGAAGAAACTATGGATGCTCTCCAAAACGACATCGACACCTTGGAGAAGGAGAAGGTCGACATGAAGAAACGTTTAGATGCTTACTCAAAGAAGTCCCTTCTGGCTGATCTTGCACGCCATGCCTCATCATCCTCTAGCATCGCCGCTGTTGTAGCAGGTGCGGCTGCTGCTAAAAGCGGCGGAAATTCTCCTTTACGGGGTGGCTCTGGGGCGGGTCAACAGCCCGTACAAGTTGTAATAAAGGACTCACCCATAGTACTTGCTCAGGTTGACTCGCTTAAAATTGCCTTGAAACATCTAAGAAACGAAAATATCCGCCTTAAGAGTCAGCAGATGAAGGAGCAACTCGATGGGTTGCCAAAAATATACATACCACCGAGAATTCAGCCTCGCACTGAGCCTTCAGAGAAACAGAGCGACGAGTCAGCGGATAAAGAACTAAAGGAAAAGGAATCGGCACCAAGCCTCAACACTGTCACAAGAGAAACAAACAAATTACTTGAGAACTTGCAAAAGATGAGTGCCTTTCCAAAAGTGGTTGACATTTCTCACAGGAAACCAGGGTCAGTTCCCGCGTTAAGCAAAATGACTCCAGCTAACCATTTGGTAGAGCGAGCAGCTATTTTGCGGGATCTCAAGCGACAAAAAGAAGAGCTCCAAGGGAAAATTCAGAAGTTAATAGCAGCAGAATATCCAGGAGGAACATCACAAAGCTCTTTTTCGTCGTTTTTATCTCCAACGTTTTCCAAGGTACTGCAAGAGAAAGCTCAGGCTCCTCAGCTTGGGAGAGTCACCATTCCTGTGCCATCGAGCACCAAGTCCAATAAATATTGCGTCACTCTGAAACCACAGGAATTCAGAACACTTCATACTGTATTTGTCAGTTAA

Transcript

rna-Spis4134_mrna

GGAAGGGAGTGCTTGAAAGACAGAAATGTAGAATTTGttcttcaatttatttcttttgtgcATTAGAAAATCCGCTAATTTTTGTGGAAAATAGTACTGGCCATCAGAAGATTAATTTAGATCGAGATGTCGGGGCCCAATGCAAAGACTGGAATGAGAGTGGAAGTTGTTGGGAAAGGCCTTGTGGGAACCGTGGCTTATGTTGGAGCTACCATGTTTGCCTCTGGAAAGTGGATCGGAGTTATTTTAGATGAACCAAAAGGCAAAAACGACGGTTCAGTGCAGGGAAAAGAGTATTTCAAATGTGCTGAGAACCATGGAATCTTTGTGCGTCAGTCTCAAATAGCTGTTCTTCAGGATGCACCAACCTCCCCATCACCTCAGCGTGGATCGTCCACTCGCAGCAGCATTGGTGGAGGAACTTCCATTCCTTTACCATCATCAATGAGGAAAGAGAAGTCTTTTGGGTCAAGGGGTTCCTTAGAGAATGTTGGTAGCAGACCATCGCCACCTTCCTCTAGGTTAGCAACACCAAAAACCAGCACAACTACTGCTCCTGAGCTATCATCAAACAGTTCCCTGAGCAAGATTCCAGCAGCTGCTTCAACTCCTTTGCCATCAGGCCCAAGAAAGATGTCTTCAGGACCAGCAATATCAGCTGATGAGTATATGGCTCTTCAAAAGAAGgttttagaaaaagaaaaggttgtGGTTGATTTAGAGGAGAAACTGGAGACATTGAAGAGTAAAAGACAAGAGGACAAGACCAAAATGAAAGAACTGGAGAAAGCAAGGATGCAATTGGAGCAGATGCAAGAATATAAGACAAAATGGCAAGAAGCACAGAGAGATTTACAAGCTCAACTGAATGTGGCAAAAAAGGAGCTCAAAGAGATCACTGAGAATCGCCAAGAACACAGTGAAGAATTGACAGAGCTTCAAGAAGCTGTGGAAATGGCAACTCTGGATAAGGAGATGGCTGAAGAAAGGTTGGAATCCCTTCAGCAAGAAAATGAGCAGTTGAAGGACAAGTTGGAAGAAGTTACTCTTGACTTAGAAATTTTGAAGAATGAAGTTAGTGAAGGAGGAATTGAAGGAGCTGCGGCAAATGCCCAGGTCAAACAACTTGAGCAACAAAATAGTAGGCTGAAGGAAGCAATCATGAGACTCAAAGAGGTCCAGGCAAGTGATAAAGCAGAGATGCAGTCCTTGCAGAAACAAGTCAAAGATCTGCAGAGTGGAAACACCACCCTTCAGAATGAAAGGGATAGGCTCTCTGAAGCTTTTCAGGAAGCTGAAACGGCTTTGGCTGAACTCAAAGAACAGGTTGATACTGCATTGGGAGCTGAGGAAATGGTGGAAACTCTCACTGATAAGAACTTGAGCTTGGAAGAAGAAATTGTCACTCTAAGGGAGAATGTGGCTGACTTGGAAGCTCTCAGAGATTTGAATGAAGAACTTGAGGAAAATCACCTTCAAACGGAACATGACCTACGAGAAGAACtggaaatgaacaacaacaaagttCGTGAGATGGAGCGTAAACTAGAGGCAGCTCAGGAAAGTATTGGAGATCATCAGCAAACGATTGTTAAGTTCAGAGACCTGGTGGCTAAACTTCAGGAAAATAACCGAGCTATGCAGGTTCAGCAAGAAGActcagagaaacaaaaagtCATCGACATTCCTTCACCTGAAATGATTGACTTTAAAGTTAAGGCAGCTGAGTTGAAGACCTATACCAAGACCGTGGAGAATGAATTAAGAAAGTTTGATCTGCAGCAGGcaaatgaaaagataaaaatgcttCACTCATTCCTGCCTGAGTCATTCTTAAGGAGAGGGGGTGACAATGAAAGTGTCTTATTGCTGCTACTCATTCCACGTCTGAGTTTCAAGACTGAATTGTTGCATTCTCAGTTAAGACAAAAGTACGAGATTGCAGAGTGTCTGGAGGATCCTGCCAAGATTCAAAGTGAAGCTGGTGAAGGACTAAGTTTTGCTTCAGGACTGATTTACCGGCTGGCAGTTCTCCAAGCAGTTGTGAAGAATATGAAGAGAGCTCTTGACAAGTGTGATGCTGGTTTGTTCAACAAATTGGTTGGTATATACCCTGAACTAGCAGCGCACGAGAGGGCTGTGGATGGACTTATTGACTTGTTCAAGAAAGACCAGTTAGATGATACAGTTGCCATGGAACCCTTGGAGAAGGCAATTCATTACTATACTACCATGGTTCGATTCCACTTGGCTGGTAACCCTGTGTCACATTCTGAGTTCTTGTCAGACGAATTGAAGATCTTCACTGCTGGAACAGAAGGTGCCACCATAGAGATCGAGAGGCTGAAGCAATATAGTAAGGATTGTGATGAAGGAAGTGCCTATGGCGAACTTGTTCAAGAAATGGAACTGAGAAACGTGGAAATTCAGCAGCTTTGcagaaagATCAAAAGAAGAATGCCAGAAGATCAAACAAGTACCCTGTCGTTTTCTGATAAGattcAAGAGTCACTTATTGAATGCGCCAGGCAACAGAACTCGGAACTGAAATTCTGCCAGGAACTTACTGCAGCCGTAACACAGAAAGCTTCTGGTCTAGGTGACAATGAAAACTTGCTGAGTGGTCAGCTTGACGAGTTAGCAAGTGATGTGGCAGTGCTGGTGTTTGAGACAGATGAAGTACCATGTAAAGATATAGTCAGTCAAACTTTCCATGAAGTCATTTCCTTCCTGTACTCGTTTGTGAGCAAAATGCAGGAAGGTGATTACGATGCTGAACCTAAAGAAGAGTCCAAGGCGGATCCTCCCTATCTTCAGCGCGCAAAGACCTTCAAGTCAGAATTATTTGATTCGGCCGGCGTGGAAGAGAAACTCCTTCAGAAGGAAAATGAGTTCATGGACctcaagaaaaatatgaaactgAAGAACGAGGAACTGAGTCAGGCTAACATAAGGATTGGATTATTGGAGAAGCGTCTTGAAAACATCAACAAAGAGGCTGATGCACGAGTCGAAGCTGCAAATCGAAAAATGGAGCAATCTACTGAGGACtttgcaagaaagaaaaaGGAGTTCGAAGAAACTATGGATGCTCTCCAAAACGACATCGACACCTTGGAGAAGGAGAAGGTCGACATGAAGAAACGTTTAGATGCTTACTCAAAGAAGTCCCTTCTGGCTGATCTTGCACGCCATGCCTCATCATCCTCTAGCATCGCCGCTGTTGTAGCAGGTGCGGCTGCTGCTAAAAGCGGCGGAAATTCTCCTTTACGGGGTGGCTCTGGGGCGGGTCAACAGCCCGTACAAGTTGTAATAAAGGACTCACCCATAGTACTTGCTCAGgttGACTCGCTTAAAATTGCCTTGAAACATCTAAGAAACGAAAATATCCGCCTTAAGAGTCAGCAGATGAAGGAGCAACTCGATGGGTTGCCAAAAATATACATACCACCGAGAATTCAGCCTCGCACTGAGCCTTCAGAGAAACAGAGCGACGAGTCAGCGGATAAAGaactaaaggaaaaggaatCGGCACCAAGCCTCAACACTGTCacaagagaaacaaacaaattacttGAGAACTTGCAAAAGATGAGtgcctttccaaaagtggttgACATTTCTCACAGGAAACCAGGGTCAGTTCCCGCGTTAAGCAAAATGACTCCAGCTAACCATTTGGTAGAGCGAGCAGCTATTTTGCGGGATCTCAAGCGACAAAAAGAAGAGctccAAGGGAAAATTCAGAAGTTAATAGCAGCAGAATATCCAGGAGGAACATCACAAAGCTCTTTTTCGTCGTTTTTATCTCCAACGTTTTCCAAGGTACTGCAAGAGAAAGCTCAGGCTCCTCAGCTTGGGAGAGTCACCATTCCTGTGCCATCGAGCACCAAGTCCAATAAATATTGCGTCACTCTGAAACCACAGGAATTCAGAACACTTCATACTGTATTTGTCAGTTAAAGAAACGAAAATGTGTACATAAATTATAAAATCTGAGACAGAATAATGGTATATTTAGCAGTCGGAGGTGGAGAAATAAGTGTTTTCTCCTTGCCGGACCGGATCAGCTGTGACTTTGAAATTCTTACTACATAGTGCcgcacattttcttttctgctaTTTTTGAGATGGTCGCAGTGTACGGTATTCTTTACTCGACTTTACAAATTGATGATGAGCTGCTTCGCATATCTGCACTACTCCGCAGTATTTCTGTCATCTCAACGGATATAGTGACTCTTCAAGAAAGGAAAACGAGAACAACGACGACGATAACGGCTAAAACAATAAATgctaaagaaaaactaaagTTAAATAGAGAAGAGCGTTCTATGAAATATCTAAACTTTGGCAAAAGGCGGGAAGGGCTTCAATGGTTCGCTTCCAGGAACACGAGATGCGATGCTGGTATGCTGGGAGGTAATTATCAAAAGAACAGTAAACCGTAGATTTGAATCGTTTGAAGTGAACGGCAGCAGATGGAAGAAAACAGGCCTTAAGTCTCTCGGAGATTTTTTTTGAGCTGCTAGGAAATAAAGAATACGCAAATACATTTATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12455 all species →	Dynactin	Dynein associated protein	Family	Interproscan
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR022157 all species →	Domain	Dynein associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18916 all species →	DYNACTIN 1-RELATED MICROTUBULE-BINDING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0051010 all species →	Molecular Function	microtubule plus-end binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04648	DCTN1; dynactin 1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.