Gene detail

Detailed information of PFX31087.1 in Stylophora pistillata

Genomic Location: Spis.scaffold41:143452...157212
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Wdr91

ATGGCGGCTGCAGTGCCGATGCTAGACGATGTTATCAAGGAATACCTTGTATTTCGTGGATTCTCAAACACTTTGAAAAGCTTTGAGTCGGATCTGAAAGCAGATAAGGACAAAAGCTTTAGGGTGGACAAAATTGTGGATCAGTTGTATCAGTACATCTTAAGCTATGACATTACGGGCCTCAGAGACTACTGGGAGTATTTAAATGACAGATTCTTCAAGAGGTTAGACTATCAGCACAATTCTAATGTCAAAAAGCTGGAGATGTGTCTTTTGCGGTTTTACATTGTGCATGCCATTCAGAACTCCAAAAATGACAAGGTTGTAGAGTTTTTCGAGAAGTATACAGCAGAGCTACAGACACAAACAGAGTGGAGAGAATGGTTTGCTATTCCTTTCATCAAGAATCCTGATCAGAATGGATTATTTGAGATGTACTTTCAGAGGGCATGGCAGGAGACGTTTTTACTCTCACTTTACAACTTTCTGATTACTTTGTTCCATCACCTGCCTATGCCAACACTTCTTAAGTATGACGAGGAACAAGGAAAGTTGCACAGGTTGGAACAGGAAGTCCTGAAGCTTAAAGAGCAGGTAGTATCACTGGCAGACGAAGGAGCAAACTTACAGCGTCAGAAATTCAAACTAGAACAAGAGCTTTCAGAAAGCCGGAGGAGAGCTGCCACTGTTGAAGAGGATGATATGGAAGAATTTCAAGTTGTCCCAAGGCAACAAGCTCAGTCTGGTAAGTTTCTACCAACTTCTTCATTGTCAAAAAAAATTACCAAAATGTTCAAGGATAAGCAAGAGAAGAACAAAAAGGGAAAAGATTTAAAATCACAGCAGCTTCAAGAGGATCAAGCACAAGTAAAACTTAAGAGGCAACAAATAATCAAACAGCAACAGCAGTTACAGCAATTGCATGAACAGCAAAAGCAGCTATCACTCATGGAGGAAGAGCAGCTTAAGTCAAGTGTAGTAGCTGCTTCATTTGAAAAACCTCAAGGTCAGGAAGTTGAAGTTCAGACTGACTTGACGCGTGACGAGGAGGATGCTAAGGCCTCAAAATCTTATTTGTCAAAAACTCTTAGCTTGGAAGCATCTTCTGCTAAAGGCCAAGACGACATAGACAAGTTTGGACGTGCTATCCGCAGGAGTAAGACATTGCCTGTAAAGCTGAAAGGAACTCAGTTGGAGTTTACAGACGACAAATCAGAAGATGCACTTTCTAAAACAGTTCATTTTCAAGGGCCAGGTGACCACAAGTCCAAGCATTTTATTTTTCTTAGCCAGGATGTCTACAAGGAACATCACTCAGCGATCGTACACTGCAGGTTTTCTTCCAGTGGAAGGATGATTGGAAGCGCTGATGCTGATGGGATTGTCAAGGTTTGGACAAACCATCCTGACATCCACACCAGTAGCACCATCATGTGTAAATCTCCCTTGCTGTCACTGGAGTGGGCTCCGAAACCGGACAGACTGCTCCTGTTAGGCACTGGAAATGGGAAAGTTCGATTTTTTGACACAGAAAATAAAAAGACCATTTGCGATGTCGCGACTGACTCTCAGTATCCCAGAATAGTTTCACTGTCGTGCAGTCCTACCGGAGGATCTTTTGTGTGTTCAGCGGCAGCAAGCAAGAAATCTTTGACGTCATCGTTGAGGTTATCCCAGTCGTTTTCAAAGTACAGTGAAATGTCCTCTCTGACGTCAAATAGTGTAGGTGGCTGCGCGGGTGTGTTGCAGTGCTGGGATATGAAAGCCATGAAGGTTGAGCGCCAGCTTCCCCTCGATCCGGTGCCGACTTGTATAAACTGCACGACGTTTAACCACAATGGAACTCTTTGTATATCAGGGGGAGCGGATGGCATGATACGGCTGTTTGATATGAGGTCTTATGACTGTTTAATCGGTTGGCAAGCTCATGAAGGTGAAGTATGTTCAATGCAGTTAAGTGCGGACGAAACCACCGCTTACAGTATGGGGACAGACGGAAAGTTCTCACAATGGAGTTTACATCGCATGGGTCAAAAAATAACTGACGTTGATATTCACGACGGGGCAGTGTGGTGCGATGCAGACAAATCCAGCGTCTTACAGAGCAAGTGCAAGTACATGACTTCACCATCATCTTATGGCAAGATGTTTGCTTTTGATTCTGAAGGACAATATCTTCTTTCCTGTGGACCGGAGTGTGGAGTGGTATATAAAGTCGAAAAGAACCAGGGTTTGAGTCCAGCGTTAACTTTACCAGCAGAGCAGAAGTCACCAGTTGTGAGCGTAGACTGGAGCTCCTCTATGAGCTGCTACACATGCCTTACTGGCTTCGTAGGTGGTTCAATACAAGTCACATCTTTGTTAAAACAGTAA

Transcript

rna-Spis4106_mrna

AAATGGCGGCTGCAGTGCCGATGCTAGACGATGTTATCAAGGAATACCTTGTATTTCGTGGATTCTCAAACACTTTGAAAAGCTTTGAGTCGGATCTGAAAGCAGATAAGGACAAAAGCTTTAGGGTGGACAAAATTGTGGATCAGTTGTATCAGTACATCTTAAGCTATGACATTACGGGCCTCAGAGACTACTGGGAGTATTTAAATGACAGATTCTTCAAGAGGTTAGACTATCAGCACAATTCTAATGTCAAAAAGCTGGAGATGTGTCTTTTGCGGTTTTACATTGTGCATGCCATTCAGAACTCCAAAAATGACAAGGTTGTAGAGTTTTTCGAGAAGTATACAGCAGAGCTACAGACACAAACAGAGTGGAGAGAATGGTTTGcTATTCCTTTCATCAAGAATCCTGATCAGAATGGATTATTTGAGATGTACTTTCAGAGGGCATGGCAGGAGACGTTTTTACTCTCACTTTACAACTTTCTGATTACTTTGTTCCATCACCTGCCTATGCCAACACTTCTTAAGTATGACGAGGAACAAGGAAAGTTGCACAGGTTGGAACAGGAAGTCCTGAAGCTTAAAGAGCAGGTAGTATCACTGGCAGACGAAGGAGCAAACTTACAGCGTCAGAAATTCAAACTAGAACAAGAGCTTTCAGAAAGCCGGAGGAGAGCTGCCACTGTTGAAGAGGATGATATGGAAGAATTTCAAGTTGTCCCAAGGCAACAAGCTCAGTCTGGTAAGTTTCTACCAACTTCTtcattgtcaaaaaaaattaccaaaatgtTCAAGGATAAGCAAGAGAagaacaaaaagggaaaagatttaaaatcaCAGCAGCTTCAAGAGGATCAAGCACAAGTAAAACTTAAGAGGCAACAAATAATCAAACAGCAACAGCAGTTACAGCAATTGCATGAACAGCAAAAGCAGCTATCACTCATGGAGGAAGAGCAGCTTAAGTCAAGTGTAGTAGCTGCTTCATTTGAAAAACCTCAAGGTCAGGAAGTTGAAGTTCAGACTGACTTGACGCGTGACGAGGAGGATGCTAAGGCCTCAAAATCTTATTTGTCAAAAACTCTTAGCTTGGAAGCATCTTCTGCTAAAGGCCAAGACGACATAGACAAGTTTGGACGTGCTATCCGCAGGAGTAAGACATTGCCTGTAAAGCTGAAAGGAACTCAGTTGGAGTTTACAGACGACAAATCAGaaGATGCACTTTCTAAAACAGTTCATTTTCAAGGGCCAGGTGACCACAAGTCcaagcattttatttttcttagccAGGATGTCTACAAGGAACATCACTCAGCGATCGTACACTGCAGGTTTTCTTCCAGTGGAAGGATGATTGGAAGCGCTGATGCTGATGGGATTGTCAAGGTTTGGACAAACCATCCTGACATCCACACCAGTAGCACCATCATGTGTAAATCTCCCTTGCTGTCACTGGAGTGGGCTCCGAAACCGGACAGACTGCTCCTGTTAGGCACTGGAAATGGGAAAGTTCGATTTTTTGacacagaaaataaaaagaccATTTGCGATGTCGCGACTGACTCTCAGTATCCCAGAATAGTTTCACTGTCGTGCAGTCCTACCGGAGGATCTTTTGTGTGTTCAGCGGCAGCAAGCAAGAAATCTTTGACGTCATCGTTGAGGTTATCCCAGTCGTTTTCAAAGTACAGTGAAATGTCCTCTCTGACGTCAAATAGTGTAGGTGGCTGCGCGGGTGTGTTGCAGTGCTGGGATATGAAAGCCATGAAGGTTGAGCGCCAGCTTCCCCTCGATCCGGTGCCGACTTGTATAAACTGCACGACGTTTAACCACAATGGAACTCTTTGTATATCAGGGGGAGCGGATGGCATGATACGGCTGTTTGATATGAGGTCTTATGACTGTTTAATCGGTTGGCAAGCTCATGAAGGTGAAGTATGTTCAATGCAGTTAAGTGCGGACGAAACCACCGCTTACAGTATGGGGACAGACGGAAAGTTCTCACAATGGAGTTTACATCGCATGGGTCAAAAAATAACTGACGTTGATATTCACGACGGGGCAGTGTGGTGCGATGCAGACAAATCCAGCGTCTTACAGAGCAAGTGCAAGTACATGACTTCACCATCATCTTATGGCAAGATGTTTGCTTTTGATTCTGAAGGACAATATCTTCTTTCCTGTGGACCGGAGTGTGGAGTGGTATATAAAGTCGAAAAGAACCAGGGTTTGAGTCCAGCGTTAACTTTACCAGCAGAGCAGAAGTCACCAGTTGTGAGCGTAGACTGGAGCTCCTCTATGAGCTGCTACACATGCCTTACTGGCTTCGTAGGTGGTTCAATACAAGTCACATCTTTGTTAAAACAGTAACGATCaattttagctttaaaattaacGAACTGGTTTGTTACCTTTTTGAACATGATAGTCGACCCTTTAATACCGCATCCGTACAAATGCAAGATGGTGTCAAACTTACAAGGGACATGACTCAAGTTAGGGGCggaccatttaacttttgaggagtggggtgggtgatttctggtcatcaagaattttttttctagcaactgctgggcaggatatttttttctgttctaaatgctctctttttcccgttacatttgggctgcatgcaatt

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039724 all species →	Family	WD repeat-containing protein 91	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13083 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031313 all species →	Cellular Component	extrinsic component of endosome membrane	Interproscan
GO:0031901 all species →	Cellular Component	early endosome membrane	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0035014 all species →	Molecular Function	phosphatidylinositol 3-kinase regulator activity	Interproscan
GO:0043551 all species →	Biological Process	obsolete regulation of phosphatidylinositol 3-kinase activity	Interproscan
GO:0045022 all species →	Biological Process	early endosome to late endosome transport	Interproscan
GO:0051898 all species →	Biological Process	negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	Interproscan
GO:0141039 all species →	Molecular Function	phosphatidylinositol 3-kinase inhibitor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24760	WDR91; WD repeat-containing protein 91	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.