Gene detail

Detailed information of PFX31101.1 in Stylophora pistillata

Genomic Location: Spis.scaffold40:888545...906464
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

RASAL1

ATGGCGAAGAGCACTATTTTGTACCTTCGAATCGGTGAGGGAAAGAATTTACCACGGAAAGACATCTCTGGAAAGAGTGATCCATACTGCATCGTGAAAGTTGACAACGAGCCTGTTGCGAGAACTGCCACAGTTTGGAGAGATTTGGAGCCATTTTGGGGAGAAGAATACACGATGTTTCTACCTGTTGGTTTTACGAACTTGTCTGTTTTTGTTTATGATGAAGACACTATTGGGGTCGATGATCTTATTGGACGAGTGACATTTGACCGAGAGACACTGGCGCAAAGTCCTAAAGGACTGGATAAATGGTTTCCTGTGTCTTTGGCCGATATGCATAACTACTCGGACATTCAAGGGGATATCAGAATCGAAACAACACTGTTCGAAAAGGGAGATGTTAAGAAGATCAGAGCAAAAGTCGTAGAAGTCAGGGACCTTCCCGAGACGGGCCGTAGCATTTTAGAGCCCTCTGTAAAGCTCACCCTCGGGGAATCAAGTACAGGCGGTTGTCAGATGCGATTATCGTTACGAGAAACAGTCGTCAAACTTGCAGAGGGACATGAGAAGATGTGGATTCCTACGAAACAGAAGTGCTTAGAGGTGGACGTGAAAGAACCGCTACAGGAACTGAAGATGATTACTGAGGTGAAGATTGAATCTGATGCACTCTGCTGTTTTGGGCAGGCCACAACTTTCCTGTCGAAGCTCAAGCCGGGACAAACCCGAGACTGTTGGTACAAGCTGTTTCCGATGCCTCAGTCGAAAGAAATTAAGACAGAGAACCTCGGTAGTATCCGAATGAAGGTTCGGTTGACTCAAGAACGCATCCTACCTCAGAAATGTTACCAGTCTTTAGTGGAGACTCTTGTCAACTCCGCTAAGGACCCGGAGAGTCTGGATCCTACAGCGCTGAGCTTAATAGAACAGCTGACTACCGCTGACCAAGCAATACTGGCTCACCAACTTGTTCGTCTGTTTATTGGCCAAGATCTCGTTATGCCATTTCTGGATTATCTGACTCTTCGCGAGATAAGGAGCACAAGTATAAGCTGTCCAAGGACTCTGTTTAGAGGCAACAGTCTGGCAGCCAAGTGTATGGAACAATTCATGAAGATTGTAGGTATGCCATACCTTTCGGACACATTGAAACCAGTTCTCGACAAGATATTTGAAGAACGCAAATACTGCGAACTCGACCCATGCAAAGCTGCAGAAAGGAAACATAGCGCCTTCAGGCGCCTGAGCTTGAGGCCGGCAGACGAGCAAGACAAGAGTCTGTCAGTGTTGACTGGTTACCTAGAGACAGTTATGACGTCAATCCTGAACTCAGTCAAAGAATGTCCAAGCTACATGCGAGCAGCCTTCAGAAATCTCGCTAAGAGAGTCTCGGATCGCTTTGGTGATGTACCTGACTATGAGGACTCTAAGTACACAGCCGTGAGTGGTTTCCTGTTTCTGCGGTTCTACGTGCCAGCAATACTTGGACCTAAGCTCTTCGGTCTGCGGGAAAACCACGCCGAAAAAAATGTGTCACGCACCCTGACCATACTAGCGAAGACTGTCCAGAAGATTGGAAACATAGAACTCCCTCTTCAGAACGGAAAAGAAGAATGGATGGGACCCCTGTACAAATGGATTGCATTCTACACTGATGAAGTAAAGGACTTCCTGGATCAGCTTGCAGACGTGGAAGATACAGAAGTTCCAGGTTGTGACCACAGGAGGACTGTGTTTAGTCACTCATTGATCATCAAAGAAGGTTCTCTCAAGAAAAGTCGCTACAGGGACACTAGGCTGCCCAAGCCGTTCAAGTTCAAAAAGCGCCATTGTTGGCTCAGCACGGAGAATTTCCTCTACGCAAAAACTAATGATTCACAGACGAGGCAGTTTCTCCCAACAAGAAAAATTCTTGCCGTGGAACGAGTTGACGAGTCAGCTTTTCAAAAGCCCAACGTGTTTCAAGTGGTCAGTAAAGATTACGATGAAGCTCTGCAAATTCTCTACCTCGCCGCTCAGGATGTGAATGAAATGAATCAATGGCTCTCAGCAATAAGGAAAACCACCATCTCTAACACTAATCTGCTCAGTTACTTCCATCCGGGAGTCTTTCATAAGAACAAATGGACATGCTGTAAGCGAGTCATCAAATCAGCTGGAGGTTGCCAGCGGACACATACACACGTGACCTTGAGCGACTGGCGAGATCCACTGGACCCAGACTCCGAAGCGCAGATGATTTTTACACAGCTTCTTCAAAGCCGAGACGAGATTCGAAAGAAATTTCTTGGAATTAATGAGCAACGGAAACATTCACAAGAATCCTGCGACACAAAAAAGGATGAACAGATATCAGTCAAGGAGGAATATACGTCTTCACCAGCCGAGAGAGCTGTGGCAACGAAGCTATTGGAAGTGATAGATGAACTCGAAAAGGCTCACCAAACATTCGAGGAGAAAACTATTAAAAAATAA

Transcript

rna-Spis4078_mrna

TTATGATATTGTTTGCTAGCTTTTACACAACTCGGCGCCCTGAGAAACGCATGAACTGTTGATGAATCGGTTTTTAAACTGAGAATTCTGCTCGCAAGGGCGGAATTTTTCcgttgtttacaaaaattttagAGTGCCAACACCACTGTTGATCTTGCAATAGTTCTTCTCTGTTGCACTTGTTGATTCTGCCAACAGTTCTGCCTTGTAAACGAAGATAAACCTGGTGAAAATGGCGAAGAGCACTATTTTGTACCTTCGAATCGGTGAGGGAAAGAATTTACCACGGAAAGACATCTCTGGAAAGAGTGATCCATACTGCATCGTGAAAGTTGACAACGAGCCTGTTGCGAGAACTGCCACAGTTTGGAGAGATTTGGAGCCATTTTGGGGAGAAGAATACACGATGTTTCTACCTGTTGGTTTTACGAacttgtctgtttttgtttatgatGAAGACACTATTGGGGTCGATGATCTTATTGGACGAGTGACATTTGACCGAGAGACACTGGCGCAAAGTCCTAAAGGACTGGATAAATGGTTTCCTGTGTCTTTGGCCGATATGCATAACTACTCGGACATTCAAGGGGATATCAGAATCGAAACAACACTGTTCGAAAAGGGAGATGTTAAGAAGATCAGAGCAAAAGTCGTAGAAGTCAGGGACCTTCCCGAGACGGGCCGTAGCATTTTAGAGCCCTCTGTAAAGCTCACCCTCGGGGAATCAAGTACAGGCGGTTGTCAGATGCGATTATCGTTACGAGAAACAGTCGTCAAACTTGCAGAGGGACATGAGAAGATGTGGATTCCTACGAAACAGAAGTGCTTAGAGGTGGACGTGAAAGAACCGCTACAGGAACTGAAGATGATTACTGAGGTGAAGATTGAATCTGATGCACTCTGCTGTTTTGGGCAGgCCACAACTTTCCTGTCGAAGCTCAAGCCGGGACAAACCCGAGACTGTTGGTACAAGCTGTTTCCGATGCCTCAGTCGAAAGAAATTAAGACAGAGAACCTCGGTAGTATCCGAATGAAGGTTCGGTTGACTCAAGAACGCATCCTACCTCAGAAATGTTACCAGTCTTTAGTGGAGACTCTTGTCAACTCCGCTAAGGACCCGGAGAGTCTGGATCCTACAGCGCTGAGCTTAATAGAACAGCTGACTACCGCTGACCAAGCAATACTGGCTCACCAACTTGTTCGTCTGTTTATTGGCCAAGATCTCGTTATGCCATTTCTGGATTATCTGACTCTTCGCGAGATAAGGAGCACAAGTATAAGCTGTCCAAGGACTCTGTTTAGAGGCAACAGTCTGGCAGCCAAGTGTATGGAACAATTCATGAAGATTGTAGGTATGCCATACCTTTCGGACACATTGAAACCAGTTCTCGACAAGATATTTGAAGAACGCAAATACTGCGAACTCGACCCATGCAAAGCTGCAGAAAGGAAACATAGCGCCTTCAGGCGCCTGAGCTTGAGGCCGGCAGACGAGCAAGACAAGAGTCTGTCAGTGTTGACTGGTTACCTAGAGACAGTTATGACGTCAATCCTGAACTCAGTCAAAGAATGTCCAAGCTACATGCGAGCAGCCTTCAGAAATCTCGCTAAGAGAGTCTCGGATCGCTTTGGTGATGTACCTGACTATGAGGACTCTAAGTACACAGCCGTGAGTGGTTTCCTGTTTCTGCGGTTCTACGTGCCAGCAATACTTGGACCTAAGCTCTTCGGTCTGCGGGAAAACCACGCCGAAAAAAATGTGTCACGCACCCTGACCATACTAGCGAAGACTGTCCAGAAGATTGGAAACATAGAACTCCCTCTTCAGAACGGAAAAGAAGAATGGATGGGACCCCTGTACAAATGGATTGCATTCTACACTGATGAAGTAAAGGACTTCCTGGATCAGCTTGCAGACGTGGAAGATACAGAAGTTCCAGGTTGTGACCACAGGAGGACTGTGTTTAGTCACTCATTGATCATCAAAGAAGGTTCTCTCAAGAAAAGTCGCTACAGGGACACTAGGCTGCCCAAGCCGTTCAAGTTCAAAAAGCGCCATTGTTGGCTCAGCACGGAGAATTTCCTCTACGCAAAAACTAATGATTCACAGACGAGGCAGTTTCTCCCAACAAGAAAAATTCTTGCCGTGGAACGAGTTGACGAGTCAGCTTTTCAAAAGCCCAACGTGTTTCAAGTGGTCAGTAAAGATTACGATGAAGCTCTGCAAATTCTCTACCTCGCCGCTCAGGATGTGAATGAAATGAATCAATGGCTCTCAGCAATAAGGAAAACCACCATCTCTAACACTAATCTGCTCAGTTACTTCCATCCGGGAGTCTTTCATAAGAACAAATGGACATGCTGTAAGCGAGTCATCAAATCAGCTGGAGGTTGCCAGCGGACACATACACACGTGACCTTGAGCGACTGGCGAGATCCACTGGACCCAGACTCCGAAGCGCAGATGATTTTTACACAGCTTCTTCAAAGCCGAGACGAGATTCGAAagaaatttcttggaattaaTGAGCAACGGAAACATTCACAAGAATCCTGCGACACAAAAAAGGATGAACAGATATCAGTCAAGGAGGAATATACGTCTTCACCAGCCGAGAGAGCTGTGGCAACGAAGCTATTGGAAGTGATAGATGAACTCGAAAAGGCTCACCAAACATTCGAGgagaaaactattaaaaaataagaagacTATATCTAGAGAATAACGCACTGTCTATATATGAACAGctacaaaaggaaaattttcataaGTAAACAGAcaagttagttttgttttcaacaagaCTGGAAACAAGACTGGAAATGGGTGGTTCTGTATcaggaaaaaggaaagagaggcATAGCTCACTGAAATATATgtatgaggcccagaaggccgaaacag

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006928 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF00616 all species →	RasGAP	GTPase-activator protein for Ras-like GTPase	Family	Interproscan
PF00779 all species →	BTK	BTK motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR001936 all species →	Domain	Ras GTPase-activating domain	Interproscan
IPR001562 all species →	Conserved_site	Zinc finger, Btk motif	Interproscan
IPR039360 all species →	Family	Ras GTPase-activating protein	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10194 all species →	RAS GTPASE-ACTIVATING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17632	RASAL1; RAS protein activator-like 1	-	Ras signaling pathway	ko04014	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.