Gene detail

Detailed information of PFX31102.1 in Stylophora pistillata

Genomic Location: Spis.scaffold40:1000345...1008421
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis4086_mrna

CGCGGACTGATCTGAACTGAATCTTCACCTAAGGTTTTCTACCCTTTTACGCTATTAGTCTCTGTCTCCCAGTGGATTCTCCCGAGTATATCGACTCGACTAAATTTTTCCCTTGGCCTGGATAAAGGAAACGAAGAGTCTTTCTGGCTTTGCTCTCAGACAGCGAGATGCCCAAGTTGAAAGGAGTCGAAGGCACAAAATCCCACAAGAAAATGCGTAGAAAAAGGTCAACTGCGAATACTGTCAAAGGAAAAAGCAAACTTGGAGGCAAGGGAAAAAAGTCTGGAAGAAGCGTGAGCCCTCGGAGCGATTCATCAGAGGACAGCGTATTTGGTAATCAAGCCTGCGCACCACGGACTTCGGgaaggataaaaaaaatggcGGCAGTGTTCAATCGAGAGGCGAGCTTTGATGACAACCGTTCTGATGTCTACGATGATGAAGAAGATAGGGGGTTTTTCCATATGAATGAATCAGATGAAGATACAGAAGATGCAAGTGAAACTGATATGGCAAAGCTTGAAGAGGAGTTTACAGAAATGAAAGAACAAATGTATCAAGAAAAGTTACAGGATTTCAAACAACAGCTACAGAATTTGAACAGTGGTAAACATTCTGACTACACTAAAAGGCTGAATAAACTTGATTTGGTAAGAACAGAGAGACTTCTCATTGCAGAAATCTGTAGGAAGTATGAGATTGAGCTTGTGGAGAAGGAATACATCCGTGAACAGAAAGCAGCACAAGAGGAGTATGAACAAAAGAAAGTTGAACTCAAAGAGACACTCCTAAATGAActtcaagagaagaaaaaggtGATAGAGACAGAGAGGTCATCCATGGAGCTCACAGGAGATTCAGTGGAAGTGAAACCTGCTGTCACACGAAAACTGAGAAGAAGACCAAATGACCCATTACCTGCacctgaaaaaagaagaaagactTCTCCCCAGATAAATTACATGCTGGATGAAGAAGATATCATGGACGACTTGAAAGCTCTGAACAAGTTGGTCTCTCTTCCAGGAGAGGTAACATCCTCACAAGGCCAGTCACAGAATAAAACAGGATCAAGCCGCCTTAAGATATCTTCAGGAAATGGTTCTCATTCAGAAATCTCATACCCAGTTGAGGTCCGCTCTGAGGATGGAAGGCTCCTTTATGACAAAAAATGGTTCAACAAAGGGTGCAGCGTTGTTgtagaaacaagagaaaatggaAGATATAGtggatcCCTTCATTCTATTGGCCAGTCAGAGATATGGATTAAGAAAACAGACAACACCAAAGTGCGAATTTACATTTCCTCACTGATGAAAGGGAAATTTCATCTCAAGAAGAAAAATGCCAGCAGCAGTAATAATAGTACGAGTTCCGGCCCTTCAACGAATCATTCCAATACGTAACACTCATTCTAAGGAAACTCAGGGTCCTTTTTATTGACAATTACtattaataatttttgtcaGCAGTTCATAACCCTTAAATGGTATTGTTTACTTTGATAATAAAGTGACATCAGAGAAACTTTTCATGTGTATAAAACAACACCATTGGTAAAAGAttaagcaacaacaacaacaacaacaacaaatcaggaaaattttcattgagtTTGTTTTGCAAgggtttttaaaacaaatttgtttggaGTAAGTGATCTTGCCTCAGAAATCCAATTTCTTTGGTGGAAATTCACAGTCAAAATGAGTCTTAATAGATTACTTCTTTGCAAATTATACATGGTAACAGAGGTGCTGTTTGTGAGTGTCAcaaatatttatttgtaaacCTTATCAATGTAGATGAAGAAAGGAAAGCGTCTCCCTTGGAATCAGCAGATTATTACACTGTAACTCCAATCCATCCTTGGCTTCAGTAAATTTTATTAACTGGTGTAAATCTTTGCAAGTTCACTACCAAGTTGTCTATCATTTTGTTAGATGTAGTACCCTGTAAGCTTAGGAAACATTGCGTACCACACATAAACAGAAGGAAGTGGTTCTTCTGTCAGTTTAATTTAAATACTTTTCCTCCTTTGTAATTTTCTCTCATTCCCCAATACTCAAGGTCAGCATGCATATCTTTACTTAGCCAAAGAAATTCATTATTGTAAATAGCAATATTCAACCATGTAttaaaaactttgaaac

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08598 all species →	Sds3	Sds3-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013907 all species →	Family	Sds3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21964 all species →	BREAST CANCER METASTASIS-SUPPRESSOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0042826 all species →	Molecular Function	histone deacetylase binding	Interproscan
GO:0070822 all species →	Cellular Component	Sin3-type complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19201	SUDS3, SAP45; Sin3 histone deacetylase corepressor complex component SDS3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.