Gene detail

Detailed information of PFX31104.1 in Stylophora pistillata

Genomic Location: Spis.scaffold40:981860...988083
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis4084_mrna

GTCGAGTTTCGATTCACAAAATTATACTTTCATTATTGGACCAAAATACTTGCCTTTCCGTCTACTTTGTCGCCTGTTATGGGCGCTGGTGGTATCAATGGAGAGCTAAGAGATCACTCAGAACACGTCGATGCTATATTTCGCTCGCATTTTAATGTCATCAACGGTAGACCATCAACATTAGCATCGTCTTCCTCGTCCCGTCCGACCCAAGGAACTGCATCCTCTGGTAGCAGCAGTTCGAATATTTCTGTGGATGGTTTCGCAGAAATGGCCTGTTTTAGCTGCAGCTCCAATTTTACCCTCTTCAAGAGGAAGAATCTCTGTCGGAATTGTAAAAGACACTTCTGCAATGACTGTTTTTCGAGAGACCCTAAAGTTATTCCTGGAGAGAACAGCAGACACTGCCTGACCTGTAGGGCTCTCCAGTCCCCAATTGCCCACAAGGATCACCTGATGAAGTTGAAAGTGAAGGACCTCCAAGAATATTTAAGGTCCAAGCAGATCTCCTTGAATCATTGTAAGGAGAAGCGGGATCTAGTAGAGTTAATTTTACGGCATGCAGAAGAAAGAACAAACACAGCTCCCTCATCTACAGCAACTCAGCCTCAACCAGGAAGGCAACCATCACAGCCAAACCCCTCACATCCTCGCGCACCTAATGCCTTTTATACCCAGCCAAGTCCGCCAAGGAGTTCACATTCTCAACCACCTCCAAGAACTCAACCTGTTCAGGTTCCCCCCTCTGCACCATCTGCTTCTGTGAATAAGAGTCTGAGTGAAATCAAGAATGTAGATGAAGTGCAGGAGCTTTCAGTGAAGGAACTCAAATGTATCCTTAAGGCAAATTTTGTGGACTTCACGGGTTGCtgtgaaaaagaagaactctTAGAGCGAGTTAGAACCTTGTGGAAGTCTAAACAAGAATATAATAAAAAGAAGATGGCACCTGATGATTATGATAATGACGATCAGTGTAAGATTTGTATGGATAATGGAATAGATTGTGTTCTACTGGAGTGTGGTCACATGGTCACTTGTACAAACTGTGGCAAGCAGATCTCAGACTGTCCAATTTGTCGACAGCATATTTCCAGGATTGTGCATGTGTTTAAAGCTTAACCTTTGTATGTTTTGATAGAACATCACTGAATGTAGCTAGCTGTGCTGTAATTTCATGGGAATCTTGATTGATAAACATAGTCATTCACTTGTCCATGGGCTTTGTTAAGCAAGCAGCATTCCTTGCTGCAGGCTGAAGTGAAGTGCATGCGGAGAGTTTCATGCATAAAATAGAATTAGGTATGGCTGTGATGTGGTTTAGTTTTGTCTTTGGTTTATTCCTACTTCATTACATACTCACTGATACTTTAGAGAAACTTAAAGAGACAAGGTGCAGACTGAATAAGCCACAATGTCAGTTTCTGCAGCTTATATAGCAACAAGGAGCAGTTATTTATTACTTTCCCCGGATGGGTTTCTAGGTTACCACAAGCTCACTCGTCCACACCCCTCAGCATTTTAAAATGATCACTGTGATAATTTTCTCATACCCATTTATTACTGTGATGGATTAAGAATTTTCTTCTCCAAGAACACAGGACTGTGACTTTGAATTTACACTTTTCATGTAGAGTTCTGCAAGGCAGCCATCAGGCCATTGTGTCCTGAAGATAAATTTGAACCACAGTGGTTACAAATGTGACATGTGCACTACTTTTGGGAACAGATGCATGGGGGTGACGTTTATCCTCAGTCCCTGATATGGGTGACAAAGTGTCCTAACAAGAGGTAATAATAAGCAGGGGGTTGAAGTGTCTACATGCATGTATACTCACATCTACAGTGGAACCCCGATACAACGATCCTTGATATAACGATATTCCCAGTACAACGATAAATATGCTATGTCCCAgcaaaagttacagtaaaatgtatgggACAGAGCCCCGTCTCGATATAATGATAACTTGATACAACAATCGAATTCCACTGCTCCCTTGGCATATCGTTATATtggggttccactgtacttgTGTCTTACAACCACCTTTAGTTGTATGAaaattctgttcttttgttttttttttctcgcaatTTGTTCAGCTGtgagaaaaagtaaacaagaattgttttcaattttagggaataatatttttaaaatttgtttagtGACATCCAATTTTCCAAGTTTGGGCTTGATACTTTTTGGTGGAAGAATTGGAACAAAAAGAATGGAGTCTCTTTTGCCTTCTTTATTAGCTTTTTTGTAAAATGAGATTTAGATGTTGGTTGCAAGTGCGGTGAGATCTGTAATCTGTTGTTTCGTGGAGTCTAGGTTTCTGTTATGGCTCCAATTATAGGGTTATCATGTTGCTTTAATTCACCTCAAGAACAGTGTTGTTTTGCATGGAAGAAAGCATTGgggttttaatatttttttgatgttttcgtAAGGAAGAGTAAATTTTGTGGTTGTTTGAGAATTTTTACACAGCTGGTTAGCACTTCTTAAAGACAATAGCGGGAATATAGGTAGGTCTTTAAAATGCCCAAAAGGCATTTTCCAAAAGAACTGATTTGTTTATAAATCGAGAGTTCCTTCTACAGCATATATTGAACATGTTAtcaataattaaaagtaaacctgctgcttgaaaaaaatttttttactttgtatttgtattttaaagAGTAAGGCTCTTTGGCGCAGGACTAATTATTTGATATGTATTTACATCGCCGTAGTTGTTATCATCAGGGCTCAGTACTAATGATAGCCCActggccacagactagtagaaattcagctttggctaatggttttcaatttccactagccag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR051728 all species →	Family	RING-FYVE domain-containing E3 ubiquitin-protein ligase	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14879 all species →	CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070936 all species →	Biological Process	protein K48-linked ubiquitination	Interproscan
GO:1902042 all species →	Biological Process	negative regulation of extrinsic apoptotic signaling pathway via death domain receptors	Interproscan
GO:2001271 all species →	Biological Process	obsolete negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20804	RNF34; E3 ubiquitin-protein ligase RNF34	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.