Gene detail

Detailed information of PFX31110.1 in Stylophora pistillata

Genomic Location: Spis.scaffold40:662381...681998
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

nol10

ATGCAGGTTTCACAACCTAATAATGTTAAAATTTATAACTTGTCAGCAGGAAAATCTTTGCCAGAGTGGCTTTCCGAAAGAAAGAAGCGAACCTTGCAGAAGAATGATATTAACATTAGAAGAAGAATTGAACTTCTCCAGGATTTTGAGATGCCAATTGCTTCTACAAATGTGTGTGTTTCTGCAGACAAACAGTACATAATGGCTTCTGGGGTTTACAAACCTCGAATTCGCTGTTATGATACATCAGAACTCTGTATGAAATTTGAAAGATGTCTGGATTCTGAAATTGTGAAGTTCTGTATATTGTCTGAAGATTATTCTAAGATGGTGTTCTTAACCTGTGATCGCCATGTGGAGTTTCATGCACAGTATGGACGTTATTATCGCACCAGGATTCCCAAGTTTGGACGTGACCTTGTTTACCATTATCCATCTTGTGATCTTTATCTCGTAGGAGCAAGCTCTGAAGTATACCGACTGAATCTTGAACAGGGAAGATTTTTAACTTCTATTCAGACCAATGCTGTTGAGATAAACACCTGTGACATAAACCCCGTGCATCAACTTTTTGCTGCTGGAACAGCTGAGGGACATGTGGAATGCTGGGATCCCAGGTCTTGCAGTCGTGTTGGTTTGCTGGACATTGGACTTGGTGGATTTGATTACCAAAGTTCAGACAAAGTCCCAGCTGTCACAACACTGCTGTTCAAAGATGGATTGACAATGGCTCTTGGGACAAGTACTGGGCATGTTTTGTTGTATGATCTTCGGTCCACCAAACCTTTGTTGGTGAAAGATCACCGATATGGCCTACCCATCAACAGCATTGCCTTCCAAGATAAACTAGATGTTGTGTTGTCTGCTGATTTAAAGATCCTCAAAATCTGGGACAGAGAAACAGGAAAGCCCTTTACCTCCATCGAACCACCCACAGACATAAATGATTTATGCTCCTATCCAGACTCAGGTTTAGTTTTCATGGCAACTGAATCCCCCAAAATGCTTGTTTACTATATCCCGGCTCTCGGCCCAGCTCCCAGGTGGTGCTCGTTCCTGGACAACTTGACTGAAGAGTTGGAAGAGGACCAACAGCCAACAGTGTATGATGATTACAAGTTTGTCACTAAGCAAGAATTGGAAAGTTTAGGTTTAACGCATTTGATGGGAACGAATCTGTTGCGTGCTTACATGCATGGGTACTTCATAGACATTCGACTTTATCACAAGGCCAAGTCTTTGGCAGAGCCGTTTGCGTTTGAAGAATATCGTAAGAAACGAATCCAGGACAAAATTGAAGAAGAGCGCGCCAACAGAGTCAAGCTGAAGAAACTACCCAAAGTGAACAGAAATTTAGCTGAGAAGCTGATGGACGAGAAAAAAGATAAGAGAAAAGAAGCAGTTGAAAATTCGGAAGTGAGTAATCCGCTGGGTGATGACAGGTTTTCAGCCATGTTCTCCAACCCAGATTTCCAAGTGGACGAAGAAAGCCAGGAATTTAAACTTCTCTATCCTGTTGTGTCCAAACACGACCGAGAAAGACAGAAAAAACAGAGAGAAAAACAAGCGTTACTGGAGCAATTTGATGAAATTGAGGAGCCAGAAGGTCGAGCGAGTGAGGAGGAGTCAAGCAGCTCAGAGGACGAGCGGGAATGGCGACTAGAACAGAAGAAGCAACGAAGAGAGGCTAAGATGAATGAAGAGAAACATATCGCTAACAAACCCAAGTTTTACGAGCTGAAATCTGGAGGAAATTTTAGGAGCATGAAGTCTGGCAAATCGGCATCGACTTTGAGAGATAAGAAGATATCCCTCGGAGAACGTCTCCTTCATGAACAAAATTCTGGTGTAATCAGATCAACTGGCTCCTCTTTGGGAGAAAAAGAAATCACGTTCCAAGTTAAAAAGAGCAACAAAGAGAAACAAAGAAATGAGGAAATTCGTGCTCATGTTAAAGAAAGGAAAAGGCTTCGCCGATCAGCCACGAGTGTTCTGGGGAAGGAAAAACGCGGGCCGGTGTTTTGGAGAGGAAAAAGAGTTAGATGA

Transcript

rna-Spis4059_mrna

aaaagatggcGGTCGACTAAGGATGACCGAAAGTTCTACCAAGAGTTAACTAAGAAAGATGCAGGTTTCACAACCTAATAATGTTAAAATTTATAACTTGTCAGCAGGAAAATCTTTGCCAGAGTGGCTTTCCGAAAGAAAGAAGCGAACCTTGCAGAAGAATGATATTAACATTAGAAGAAGAATTGAACTTCTCCAGGATTTTGAGATGCCAATTGCTTCTACAAATGTGTGTGTTTCTGCAGACAAACAGTACATAATGGCTTCTGgggTTTACAAACCTCGAATTCGCTGTTATGATACATCAGAACTCTGTATGAAATTTGAAAGATGTCTGGATTCTGAAATTGTGAAGTTCTGTATATTGTCTGAAGATTATTCTAAGATGGTGTTCTTAACCTGTGATCGCCATGTGGAGTTTCATGCACAGtatgGACGTTATTATCGCACCAGGATTCCCAAGTTTGGACGTGACCTTGTTTACCATTATCCATCTTGTGATCTTTATCTCGTAGGAGCAAGCTCTGAAGTATACCGACTGAATCTTGAACAGGGAAGATTTTTAACTTCTATTCAGACCAATGCTGTTGAGATAAACACCTGTGACATAAACCCCGTGCATCAACTTTTTGCTGCTGGAACAGCTGAGgGACATGTGGAATGCTGGGATCCCAGGTCTTGCAGTCGTGTTGGTTTGCTGGACATTGGACTTGGTGGATTTGATTACCAAAGTTCAGACAAAGTCCCAGCTGTCACAACACTGCTGTTCAAAGATGGATTGACAATGGCTCTTGGGACAAGTACTGGGCATGTTTTGTTGTATGATCTTCGGTCCACCAAACCTTTGTTGGTGAAAGATCACCGATATGGCCTACCCATCAACAGCATTGCCTTCCAAGATAAACTAGATGTTGTGTTGTCTGCTGATTTAAAGATCCTCAAAATCTGGGACAGAGAAACAGGAAAGCCCTTTACCTCCATCGAACCACCCACAGACATAAATGATTTATGCTCCTATCCAGACTCAGgtttaGTTTTCATGGCAACTGAATCCCCCAAAATGCTTGTTTACTATATCCCGGCTCTCGGCCCAGCTCCCAGGTGGTGCTCGTTCCTGGACAACTTGACTGAAGAGTTGGAAGAGGACCAACAGCCAACAGtgTATGATGATTACAAGTTTGTCACTAAGCAAGAATTGGAAAGTTTAGGTTTAACGCATTTGATGGGAACGAATCTGTTGCGTGCTTACATGCATGGGTACTTCATAGACATTCGACTTTATCACAAGGCCAAGTCTTTGGCAGAGCCGTTTGCGTTTGAAGAATATCGTAAGAAACGAATCCAGGACAAAATTGAAGAAGAGCGCGCCAACAGAGTCAAGCTGAAGAAACTACCCAAAGTGAACAGAAATTTAGCTGAGAAGCTGATGGACGAGAAAAAAGATAAGAGAAAAGAAGCAGTTGAAaattCGGAAGTGAGTAATCCGCTGGGTGATGACAGGTTTTCAGCCATGTTCTCCAACCCAGATTTCCAAGTGGACGAAGAAAGCCAGGAATTTAAACTTCTCTATCCTGTTGTGTCCAAACACGACcgagaaagacagaaaaaacagagagaaaaacaagcGTTACTGGAGCAATTTGATGAAATTGAGGAGCCAGAAGGTCGAGCGAGTGAGGAGGAGTCAAGCAGCTCAGAGGACGAGCGGGAATGGCGACTAGAACAGAAGAAGCAACGAAGAGAGGCTAAGATGAATGAAGAGAAACATATCGCTAACAAACCCAAGTTTTACGAGCTGAAATCTGGAGGAAATTTTAGGAGCATGAAGTCTGGCAAATCGGCATCGACTTTGAGAGATAAGAAGATATCCCTCGGAGAACGTCTCCTTCATGAACAAAATTCTGGTGTAATCAGATCAACTGGCTCCTCTttgggagaaaaagaaatcacgTTCCAAGTTAAAAAGAGcaacaaagagaaacaaagaaatgaggAAATTCGTGCtcatgttaaagaaaggaaaaggcTTCGCCGATCAGCCACGAGTGTTCTGGGGAAGGAAAAACGCGGGCCGGTGTTTTGGAGAGGAAAAAGAGTTAGATGACAAAACACAAAATGCAGTTGAGGGAGACGGCATGAAAATGGGATTCTGTTTGGAGATCAGAGGGGCAGCAAGAACATCTGTTCGGGATAGGACTGCCGACAGTATACTGGTGAATAGAAACGAGGGTTTCCCAAATGAAACGGGTTCAAGCCTGCCTAGTTCCAAGGCTTTTCCTTTAGCCTGTCATCAGCATGAAGTCTGGGAAGGAATGTTAGGTGACGTCACAGTTTAATGTAGAGGCCAGGTTCGACGGAGGTGTGAACGCTTAGCAACAAAGCTGAACAAGTTAGTCCCAGCGCTGGTTTAATTAATAGACTAATTGATAGGATACTACTATAGAGGGCTGGTCTTAAATTCCAACTGCAGATTCCAAGTACTCTCTCTTAAGGAGTTCTTGGCGCTTTTCATGACAGGTTTTAACCGCGATATATCTGATGTATCAAAGTTGTGTTCGTTGTTTCTTGCGTATTTAAAAGGAGGTGCTGTCACTATGGAAAGGAGAAAGCGAGGATGGTGACAACTGAACGTTAATCTGACGAACTGTTTATAAAAAATCGTACACTTTTGAATTTGATGTAACGTTTGATGTGGAGTGTTGGTCGCAAACATTCTGCCGCGCGTTTTCCTAGACAGTTTAATAAGATGATGGCCAAGACCTAGAGAAGCCCAAGCGAGCAGTTGCAAGTTCTAATGTGtcattacacttttttttttatttgctgataAATTTTGATTACTTTTTACACGTAGCAAACTatattttatgttatttcatCGCGGTGAACGATTAAATTTAACAATcattccactcgcacttgtgggatatgagatgatagatagccaacgaggc

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08159 all species →	NUC153	NUC153 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012580 all species →	Domain	NUC153	Interproscan
IPR040382 all species →	Family	Nucleolar protein 10/Enp2	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14927 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14788	NOL10, ENP2; ribosome biogenesis protein ENP2	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.