Gene detail

Detailed information of PFX31121.1 in Stylophora pistillata

Genomic Location: Spis.scaffold40:786859...801940
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis4067_mrna

AACAAGATGGCGCTCTTCTGTTCAATCAGCAATGAAGTCCCTGAGCACCCATGTGTCTCACCTTCTTCAAACTGTGTGTTTGAGAGGAGGCTTATTGAAAAGTATATTGCCGAAAATGGAACTGACCCAATAAGCGGTGAACAGCTTTCAGAGGAGCAGCTTATTGACATCAAAGtcaATCCATTGATCAAACCCAGGCCACCATCAGCAACAAGTATTCCAGCTATCCTGAAAGCACTACAGGATGAGTGGgATGCCTGCATGTTGCACAGTTTTACATTACGACAACAACTTCAGACTGCTCGCCAAGaGTTGTCTCATGCTCTATACCAGCATGATGCTGCTTGCCGCGTCATCGCTCGATTAACAAAGGAGGTGACTGCTGCTCGTGAAGCTTTGGCAACTCTCAAACCACAAGCTGGTATGGCTGTGGTTGTTCCCTCTGCTGTTCCTGTGCAGATGGATGAAGCGATGGATGTGTCTGCCCAGccTGGTGAAGAAGAAGGAATGACGGAAGAAGTCCTGCAGAAATTACAAGACAAGGCTACCCTCCTCACAGCTGAGCGTAAGAAGAGAGGCAAGAAGGTTCCAGAATACTTGAGTACAGCAGAGGAGATACAATCTTACAAACCAATTTCCTCACATGCAGGCTTACACAGTGCAAGCAATCCTGGAATCTTAGCTCTCGATTTATTTGCTGCAGATACATCCAGAGTTATCACAGGTGGCCTGGACAAAAATGCAGTGGTGTTCTATCGTGACTCAGAACagGTCATTGCCACTCTCAAAGGCCATACAAAGAAGGTTACAAATGTTGTGTATCATCCACATGAGgATCTTGGTTTCACTGGATCAGCAGATGCGACCATCAGGGTGTGGTCCATTCCACAGGCTTCTTGTTTACACACAGTTAAGGCTCATGATCAAGCTGTTACTGGGCTAAGTCTCCATGCAACAGGTGACTACCTCCTTAGCTGCTCAACAGATCAGTATTGGGCTTTCTCTGATCTTCAAACTGGCCGTGTTCTTACCAGGTGTTTATCAGATCCTAACATCAATCAAGGATTGACATGTGCTCAGTTTCATCCTGACGGTCTTATTTTTGGTACTGGAACCACCGATAGTGTGATAAAGATCTGGGATCTCAAGGAAGGTGCTAATGTAGCTAAATTTCCAGGACATTCTGGTCCAATTACTGATATTTCCTTCTCTGAAAATGGTTACTATCTAGCTACCTCTGCCGACGATTCAGTTGTAAAACTGTGGGATTTGCGCaaactgaaaaacttcaaaaccaTCACGCTTGAAGATAGATTTGAGGTTAAAACGCTCAGTTTTGATCAGAGTGGTACATATTTAGCCGTGGGTGGTTCCGAAGTCCAggtctACCTCGTCAAACAATGGGAGATGATAAAGTCATTTGCAGAACACTCGGATGTGACGACAGGAGTGAAATTCGGCAAACACGCCTCATTTATCGCCTCTGTTGGTCTTGACCGTCATCTCAAGTTCTACTCGCGCTAGAGCAAGGAATAAGCTAACTTAGTCCCACGTTTACTGACAATTACTTGTACtgcttttttatatttcttgtACGTTGTACGTCaagatggtaaagttttgagaCTCTTTCTTATTTTACGCCTTATTTTTGAGGTAATCTCTCTCagttatttatgatttttctctttttcgaGAATCAAAGGGGGATCTGGAAATAACCAAGCCTGAGTGGCGTCTGTTTTTTGTTCACCAGAATATTCAGGTTACATGCAAGTTGCTTGAAACGTGAGAGATCCCAATTATATTAGGACACCAACGACTAAGAACGTGGTGAAACAATTGAAAGTGGAAGTTCAGCTCGtgcgttttgaaaactttgtgtATTTTCAATCTTGACTCAGTTACTGGCTCCCTGGGGTACTTTCTGTCCTCTGACGGGCCGTTGGGATTACTTTGGTGTTTCTCTTACGACACATTATCGAAATGCACTCTAATGCTAGAAGAGGGAGCCAGTTTCTTAGGTTCATCCTATTGTTTCACTTATAAAAAGAGAGATTACAAGAGACTGTGGTAgctttagtttagtttaaaggGAACAAGGACACATATTTGAATTACAGTAATCACCCACAAACAAGAATCTTGGGGATTAGGAACCTGCACTCTCTAATTTAGCATTTGGAATATGAGAACCTGTTTCGCTCGGAAAAGAGAAACAGATTCTTATATTGATGGAGTAACTTAATTGTCGTGATCGTACAAGTCTGCCTCTTTGAGAGAGCTGCCTAcgtgtttgcttttgtttttgtttgtttgggtTTTCTTTTGGTGCTTCTTGTGATTATTTGACAGAGCCTGCAAACATAAGTGGCGCACATTGACCGCTTTTTTTTTCGGCCTTCGTCATTTCTGTTTCATATTAACGCCAGGCGCGAACCTGCCCATAGGCATTACCTGTTATCGTAGTGACAATGTTGAAATTGTATGCGTGAAGTCCGTTAGTTTGAGTTTGCGATGATAAACTTTAGCAAAACTCCTTTGGTGTCTCGGGAAACTTTGATTGAGTTTCCTTTAACTTTGTATAAAGGTCAAACTTTTGTAAACTTTTAGCTAGTTTTAACAAtcaataaaaaagcaaaaaggaaaat

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08606 all species →	Prp19	Prp19/Pso4-like	Domain	Interproscan
PF04564 all species →	U-box	U-box domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038959 all species →	Family	Pre-mRNA-processing factor 19	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR013915 all species →	Domain	Pre-mRNA-splicing factor 19	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR003613 all species →	Domain	U-box domain	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43995 all species →	PRE-MRNA-PROCESSING FACTOR 19	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071006 all species →	Cellular Component	U2-type catalytic step 1 spliceosome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10599	PRPF19, PRP19; pre-mRNA-processing factor 19	EC:2.3.2.27	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.