Gene detail

Detailed information of PFX31164.1 in Stylophora pistillata

Genomic Location: Spis.scaffold40:113835...133565
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

AWC38_SpisGene4026

ATGATGGACGAGGAGTTGATGTGCGAAAGTTTGATGAAATGGGTCAGTACCTTTGAAGGAATAAAAGCTCCGCATAAAACTATCGACGAATTGGCTGATGGCGTTGCTCTTTCAGAATGTTTAGCCGAAATTGCTCCAGATTGGTTTGATGATGAGTGGGTGTCCAAAATAAGACATGATACTGGAGATAACAGAAGACTGAAGGTAAATAACCTCAAGAAACTTGTGAAAGGAATCCATGATTACTACACTGAGGTGCTCACAATGGATATCTCAGGATTTCCCATGCCTGATGTTAATGCCATCGTTGAGAGTCAGGAAATCTCTGACCTTGGTAGATTATTACAGTTAGTTCTTGGCTGTGCTGTTAACTGTGAAGATAAGCAAGAGTATATTCAGGTTATCATGTCTATGGAAGAATCTGTACAGCATGTGGTTATGATGGCAATACAAGAGCTCATGACAGGAAAAGAAAGTGGTGTGCCTGGGGCAGATAGTGAAATGTTTAAAGAATTAGAGATACAGCATAAGAGAACACTCGAACAGCTTAGTAGTATGGCAGCTGAAAAAGAAGAATTATCACAGAGATGTCATGAATTGGATGAACAGTTGTCCTTCATCAAGGAACATGAGAGTAGCTTACAGTTGGAAAATGAGCGACTCAGAGATAAGCTAAGTCAGCAAGACACAAGTGGCGACAGAGATGATGACATCAGTTTTTCCACTCAAAGAATGCACCAGCTTCAGCAACAAGTAGAACAACTCAAGGAAGAAAATTTCACCATGGAAACTTCACGTGATGAATTCAAAATTAAATATGAACAGTTGGAAAGGGATGTTCTGATGTTGAATGAACGGAATGAGCAACTGCAGAGCTTAGCTGAAGAATCTCAGATGCTGAAAGATGAAATGGATGTCATACGGCATTCCCAGGAGAAAGTGATTAAGTATGAATCAACAATAGAACTTTACAAGAAGAAATTAGAGGAATTGTCAGATATGAGGAAACAGATGAAGGCTTTAGAAGAGAAAAATGTGACATATATGAAAGAAACCATGAACTTACAAGAGGATCTAAGAAAAGCCAATGCATTAAAATCTCAAGTTGACACATACAAGAAACAGGTACATCAGTTGCAGGTGCAGGTGTCAGACTTACAAAGAAGAGCAGACAAGGCAGAGTTTGAGGCAAAGAAGGCAAAAGAGAAGGTCACAAACCTTGATGGAGAAAATGAACGTCTAAGACAGGAGAGAATGAAATTGAAAGAAGAAAATGAGGAGCTTCAACTTGCCCAAGTAGCAGGTTCTCCAATGCGTCAGATATCTGCAGGGACCCCTTCAAGTGACGATTTTGATCTGGGTGGCTCCATGTCCCCAGAAGTGAAGGAACGTGTTCTTCGTCTGGAACATGAAAATAAGAAGCTTAAAGAGCAGATGCAGGGCGAGCAAGAAGAGCAGAACCAGCTTCTTCAAAGTCTCCTCAATGATGCTAATGAAAGAAAGGATCAACTAGAGAAGGAGAACAGGGAATTGAATCAGAAGCTTATGGAGGTAGAAAGCGAACTAGATGACATGAAAAATCAGAAGAATGCAGGGGAGATGGAAAAAGATAGCGAACTTGGCAAGAAATACACGGATCATTTAGACAAACTCAAAGTCGCAAATGACGAACTGCAGAAAAAGAAAGCATACATTGATAGTTTGGAACCGAAAGTGTCAAGTAGTGCGGAGAAAGTAAATGAATTGCAAGAACTTCTGAATAAGAAAGATCAAGAGATGAAGGTCATGGAAGATCGGTACAAGAAATACTTGGAGAAAGCTAAGAGTGTAATAAAAACTCTCGATCCGAAGCACAGCTCGGGCGCGCAACCAGAGGTTCAATTGCTTAAAAATCAAGTTCAAGAAAAGGAGAAAATTATAGAGCATTTGGAGCGGGATCACGAGAAGATGAAAATCACAAGAGAAAGAGAAGAGAAGCTTATTGTCAGCGCTTGGTATGAAATGGGCATGCAACTCCATAGAAAAGCTGCTGAGGAAAGGTTATCAGGGAACTCAAGTGGAATGTCCTTCTTAGCTCGACAAAGACAAGCTTCCAGTCGCCGCTCAACGCCAAATAGAACGCAACAGGCTAACGCTGTCTCGTCTAGGGATACGTAG

Transcript

rna-Spis4026_mrna

CATTACTTCAGTTCAGTGAAGCTCTCCTTGTAAATATTGGTTAATTTTGGGTCTTTCCTTACTTTTCTATCGCATTGGTCACTATATATCACAAACATGATGGACGAGGAGTTGATGTGCGAAAGTTTGATGAAATGGGTCAGTACCTTTGAAGGAATAAAAGCTCCGCATAAAACTATCGACGAATTGGCTGATGGCGTTGCTCTTTCAGAATGTTTAGCCGAAATTGCTCCAGATTGGTTTGATGATGAGTGGGTGTCCAAAATAAGACATGATACTGGAGATAACAGAAGACTGAAGGTAAATAACCTCAAGAAACTTGTGAAAGGAATCCATGATTACTACACTGAGGTGCTCACAATGGATATCTCAGGATTTCCCATGCCTGATGTTAATGCCATCGTTGAGAGTCAGGAAATCTCTGACCTTGGTAGATTATTACAGTTAGTTCTTGGCTGTGCTGTTAACTGTGAAGATAAGCAAGAGTATATTCAGGTTATCATGTCTATGGAAGAATCTGTACAGCATGTGGTTATGATGGCAATACAAGAGctcatgacaggaaaagaaagtgGTGTGCCTGGGGCAGATAGTGAAATGTTTAAAGAATTAGAGATACAGCATAAGAGAACACTCGAACAGCTTAGTAGTATGGCAgctgaaaaagaagaattatcaCAGAGATGTCATGAATTGGATGAACAgTTGTCCTTCATCAAGGAACATGAGAGTAGCTTACAGTTGGAAAATGAGCGACTCAGAGATAAGCTAAGTCAGCAAGACACAAGTGGCGACAGAGATGATGACATCAGTTTTTCCACTCAAAGAATGCACCAGCTTCAGCAACAAGTAGAACAACTCAAGGAAGAAAATTTCACCATGGAAACTTCACGTgatgaattcaaaattaaatatgaACAGTTGGAAAGGGATGTTCTGATGTTGAATGAACGGAATGAGCAACTGCAGAGCTTAGCTGAAGAATCTCAGATGCTGAAAGATGAAATGGATGTCATACGGCATTCCCAGGAGAAAGTGatTAAGTATGAATCAACAATAGAACTTTACAAGAAGAAATTAGAGGAATTGTCAGATATGAGGAAACAGATGAAGGCTTTAGAAGAGAAAAATGTGACATATATGAAAGAAACCATGAACTTACAAGAGGATCTAAGAAAAGCCAATGCATTAAAATCTCAAGTTGACACATACAAGAAACAGgtaCATCAGTTGCAGGTGCAGGTGTCAGACTTACAAAGAAGAGCAGACAAGGCAGAGTTTGAGGCAAAGAAGGCAAAAGAGAAGGTCACAAACCTTGATGGAGAAAATGAACGTCTAAGACAGGAgagaatgaaattgaaagaagaaaatgaggaGCTTCAACTTGCCCAAGTAGCAGgttctcCAATGCGTCAGATATCTGCAGGGACCCCTTCAAGTGACGATTTTGATCTGGGTGGCTCCATGTCCCCAGAAGTGAAGGAACGTGTTCTTCGTCTGGAACATGAAAATAAGAAGCTTAAAGAGCAGATGCAGGGCGAGCAAGAAGAGCAGAACCAGCTTCTTCAAAGTCTCCTCAATGATGCTAATGAAAGAAAGGATCAACTAGAGAAGGAGAACAGGGAATTGAATCAGAAGCTTATGGAGGTAGAAAGCGAACTAGATGACATGAAAAATCAGAAGAATGCAGGGGAGATGGAAAAAGATAGCGAACTTGGCAAGAAATACACGGATCATTTAGACAAACTCAAAGTCGCAAATGACGAACTGCAGAAAAAGAAAGCATACATTGATAGTTTGGAACCGAAAGTGTCAAGTAGTGcGGAGAAAGTAAATGAATTGCAAGAACTTCTGAATAAGAAAGATCAAGAGATGAAGGTCATGGAAGATCGGTACAAGAAATACTTGGAGAAAGCTAAGAGTgtaataAAAACTCTCGATCCGAAGCACAGCTCGGGCGCGCAACCAGAGGTTCAATTGCTTAAAAATCAAGTtcaagaaaaggagaaaattatagAGCATTTGGAGCGGGATCACGAGAAGATGAAAATcacaagagaaagagaagagaagCTTATTGTCAGCGCTTGGTATGAAATGGGCATGCAACTCCATAGAAAAGCTGCTGAGGAAAGGTTATCAGGGAACTCAAGTGGAATGTCCTTCTTAGCTCGACAAAGACAAGCTTCCAGTCGCCGCTCAACGCCAAATAGAACGCAACAGGCTAACGCTGTCTCGTCTAGGGATACGTAGCAGTAGCCTGATAAATGGAATTCATTGCTGTTCCTTTCCTCCTTTATAATATTTAACAATGAGTAACCAGCTGAGGAACCAGCGTTCAAATATGAAACGCACCGTCAGGGTTCGTTGTCTCAAGAATTGTGGAcaagaaaaaatcgaaaagtcTGCGAAACTCAGGTTGTGCCCAACCAGTAGCGGTGAAACCTTTAATTGCGAATAAATTCTAGtttcttttttacttaaatCTCCTTTGATTGACCGGCTATTTTGGAGATGAACAGTACAAAATATAAGACACATTTTTAACTCTATCTTTAGACAAATTCCTAACTTTGATTATTTCTTACGCTTTTGTGTGGCATGGGTAAGAATTACATTTTACCTTTcgatttagttttgtttaactTAAGATAAATATTTCCTACGGGGTAAAGAATAAGAGAGGCGGGTGAAAAGCGTATGACTTATTTACTCTGAGATTCGTTTAAGGCAAATCAGCAATGTGCTGAGTTCGTTTTGGGAGAAACAAATTTATCGCAGTGGAAAATAACGGCAGCTATATGAAATTTACTACACAGCGTTGTATTATAGCTAGTGTTtcgtgttgttttttttaaatgtagcCCCTGGTAAAAGCCAAGAGAGTTTAATCAGCTTGTTCCTTTGTATCCAAAAAACGAAATTGGGATTAATGCGTGGAGAAGACTATCGCGCGGCGCtgatttttaatttcctctctTATATAGTCTGGGCTCGATAGTCCCTTCCAAAAGAAACTTTTGTAGCTGGAATCTGGTAATTCAATTTGATGGGTGTTTTTATGAAAATTATCAAACTTGATTTTGGTTAATGATGACACATCAAAACCTGTCGGTGATAGAACTTGAAAACGAGTCGCTCCCGGTTGATCCAATTTGAAAAACGTGCAGAGAAGTTTTATGACATAATTTGTATAGTCAGTATTTATCGCATTATAAATTATTGTGTTCTTCCCCTTGGACCGCCATTTTCGTGCCCAACACAAGGAAAATTATGATTAAACCTACCTCTGAAAAGTATTATGCTGTAAGTGAGAAGTTATCTTGCAACTCGATTTGAATTAACTCACTATAGTTTAAAAGTATGTCActcgttttttttgttttttttttatgatttcagAATCAACTGCTTTTTATCTTGCACACAAAGATAATAATTTGTATTAGCCAACTCTCACTAATCCATAAACGTGGACGCcacaaagacattttttttctctatattAGCAGTCAGGCAAATGCCACTTTCCTTTATAAAGTTTAAACGCTACAACGAAAAAGACAGATGAAAGCTGTCTTCGAGGTTTGTTCTATTGTCTTCAGGGAATTTCATCTGTTtttagaagaaagaagaaaaaatcgaTCTTAAGAGGGGAATACATGGAAGATTTATGTTACTATGAAGAGGCCAGctctttcttgaaaatttttttgcgGAAATTAGTTTTGGAAAGGTAAAACACACCAAATCGTCTCCACGTAAACCggtatattttattgtatttatttgtagTAATATTCATAGTGAACCTCTCTTTGTTTGTCAGCAACTATAAGTCTTATTTTGTCAAAAAGGAACTGTTTGAAGAAAGttaattactaattttaaagGAGCAGTCAATTCCTTGTTTAATGAGAGTAACCGGGGAGACCTCGAATATGTGTTAACTGGTTCTACGTGTATAATAAGGTCGAGTAGAAAGATTGTGCGAcattatttttgtaaatgaGTCAAATATCCCAGGCtagtaaagaaatgaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19047 all species →	HOOK_N	HOOK domain	Domain	Interproscan
PF05622 all species →	HOOK	HOOK protein coiled-coil region	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043936 all species →	Domain	HOOK, N-terminal	Interproscan
IPR008636 all species →	Domain	Hook, C-terminal	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18947 all species →	HOOK PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0030705 all species →	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16536	HOOK3; protein HOOK3	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.