Gene detail

Detailed information of PFX31183.1 in Stylophora pistillata

Genomic Location: Spis.scaffold39:663163...690612
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Rnf17

ATGCAGCGTACACCGACTTGCCAGAATTGCTGCAAAAGCTACGGCTTTAAAGATGTGTCCAAACCAATTGGAAATCGCATCCCCTTACTTTTGGACTGTGGCCACACTTTTTGTGAAGGCTGCATCACTAAATGGGCCAGACTACAAAAGACCTGGGTGTTATGTTCAGAATGTCAACACCCCACACCACTAACAATTGAAGGAGAGAGGGGAGTTAGGGCCATTCCACCTAATATCTACCTGTTAGGAGTGATGACCAACTCTAAAAGAGCTTCTTATCGCACTGATGTTCAAAAGCCTGGTTGCTCAAAGCTTGGGACAAAAGCTGGTTTGCAGAGAGCAATAAATCAGTTTGCACGAGAAAAGAAGGCTGAACTAATGAAACTTGACACTGATGTAAAGTGTGAAGAGTGCTCCAGAGCAACAGCCACAAGCAGTTGCAGCAAGTGTGAAACAGTGTACTGCAGTGCTTGTTTTGAGAGAGTGCATTCATATTCTGTTGCTTTGAGGAAACATGTTCCTTTGCCTGTTACAAAGAAAAAAACTGAGACAGCTGTTGGGTGTCCTGATCACAATAACAGACCTCTGGAGTTTTATGATAAGGATGATGGTCAGCCTGTGTGTTCACACTGTGTTGTTACAGGACAGAGACAAACACATGCTGTTGTACCCCTAGATGAAATCGCTAAAGAAATCCAAGATCAATTCAAGACTTCAGTTGAGGAAGTGGCTCCAATAATCAAGCATCTGGACAAGTCAGTTCAGATAATTTGTAAAGCACTTCCAGCAGTTAAGGCTGAAAAGAATAAAATTATTAATGACATCAGGGAACACTTTCAGATGTTATATTCTGCTTTACAGACAAGAGAGCAATCACTGATCAAAGAAGTTGAATTAAATCACAATGGGGAAAAGATTCTAGAGAAGATGCGAGAAGAGGTTGCGGACAATTTGCGGAAAGCAAGAGATTATGTTTATGATGTAGACCGTATGATTGGACAGCCACAGACTTTGATTGACTATGCTAAAAAGTTAAGAAGTGAGTTGGAAAGTGTAAAAGAGATGCTGTGCTGTGCTGTAAAAGTGATATCACATGAATATCAAATAAGGTTTGAAACTGGAGGAGAGATGAAGGAGAGAATCTCTGAGTATGGTTCTGTTTTCACAGATGGCTGTGCAAGATTTGAGATGAAAAAACTGAGTGAAATGAATGAGGAAGAGTTGGAACTAGAAAGTGATAACTCAGAACAGGAGCTTGTGAATGCCCAAGAAGAACAAGAAGACCCTCCGGATACTGAGCCATCTGTTCCAAGAGTGCAGCATGAGAGGACACCACAATCAATCACTGCCTCCAGGATACTTAAAACAAGTCTTGCGTATCGTCATGAACTAGTTCTTGTGACCCATATCAGAGATCCTTGTCAGTTCATGATTCAAAGAGTAGCTGACCTTGAACAACTCCAGATCATGATGAATGTCATTAACATGTACTGCGACAGCACAGAGAATGTTCATGATCTTCTCTATGATGTCAAGTTTGGTGACCTGTGTTGTGCTCAGTTTACAACTGATAATCAGTGGTACAGAGCTCGCATCAAGACTGCATATTCTCCAGCACATCCCAACACTGTACCTACACTTGAGAATAATCTTTGTGTTGAGGTGCAATACATAGATTATGGAAACAGCGAGTGGCTGCCTCTAAGCAGGTTGAGAAAGATGAAAGCAGAATTTCTAAATGTTCCTGAACTTGGAGAATGTTGCTGTTTGGCAGAAATTGTGCCTCCATTCCAGGAGGAAAAGTGGCCACCCAAAGCAGTAAAGGCATTTGGAAGTCTTACTGGGGATAAACCTTTGTTGATGACAGTGGTTGGAAGGAAGGGAAATAAGCTGGTGGTTGACTTGCGACGTCCTGAAGATGATGAACCAACTCAAGACGATGACAGACCTGTGTCTGTTCGTGATGCCCTTGTTTTCTTGGAAGTGGCTCGTTTCTCTTCTCCTGCCTCAAAACCTACAGGCATTTTCTTTCCGAAGAAGACCTACAAAGAAGCTTGTCATATCGAGGAAGGAGCGTTTGTGGATGTGCTTGTTACACATATTGCCGCCCCTGATGAAATTTATATGCAAAAGCTGTGCAGTGAAGAGACAACAGAGCTACAACATATTATGGAGGAGATGAGCAAGATGTTTGGCGGAAGGAGGCGTGGGACCGAGTGGAGTGTCCCGTGGCCTTACAAGGGTCTTGTTTGTGCGGCGAGATTCACAGAAGACAAAATTTGGTACAGAGCTCTTGTTACGGCTGTAAACAGCGATGAAACCGTAGACGTGACGTATGTAGACTTTGGAAACTCTGAAAAATTGACATTTTCCGAGATCAGGAAACTTCCTGACATGTTTCTGAGACTTCCAAAGCAGGCATTACCAGTTTGTCTCGTGGATATCAAACCAATTGGGGAGGAATGGCAGGTGCAGGATCAAGAAAATATTTCGACCCTATTGCTGAATAGATCGTTGGTGATTGATGTGAAAGGGGTTGTTGATGAAAAGATGTCGGTTTTGCTGTTTGACACCACGGGCGCTCGGGATGTTTGTATCAATCAGTTTCTTGTGCAACATGGTTATTGCCAGACGGCTGGACTTGGCATTGTTAAGAGCCCAGATGAACTAGCAATTGAAAGTCAGAACGCGAGAGAGAACAAGGGAAATGAAGGTCAACCTGAACAGACTGTAGAGGTTACAGAAAGCATGCAGGAAACTGCCAACGAACCTGACACTGAACAGGAGAAGGAGAGCCAAGCTAGTTCATTAACGGAAGAAGACAGGGCTCTGTCTGAAAGTAAAGCGGAGTCTCAAGCTAGTGAAACATCCAGCGCCTCCATTGATTACAAGGAGTTGAAATACAAGCCAGCAGCAATACCGGAAACGAATAAATTCCAAGCCGGTGTTACGTTTGTGGATTCACATGGATATGTGTATGCTCAAGAAGTGAAGGAAGGTGACCGTACGTTGATAAACATCATGGCAACCTTGCTAGAGAGATACGGCAAAAGTGAGAACCAATCAGGAGCACCTTCTGATGTGACGTCATTGTTCCCAGGCCTCCCGTGCGTTGCTCAGTTCGCAGAGGATGGCATGTGGTATCGTGCCTCAGTGATAAAAGTCGTGGAGGATAAAGTAGAAGTTAGCTATGTTGACTTTGGAAATTCGGAAGTTGTGCCCCTGTCTGCGATAAGACAAGAAATGCCGTTTATGGAGGTTCCTCACCAATGCCTTCAGCTGGTTTTGCGAGGCATTGAACCTAAAACCAGTGATGGGCATTGGCCACCAGAAGCCATCCGTGCTCTGTCTCAAGCTGTCGTGGGTCAGGACTGTATGGCTACAATCAGGGGCGATAAACTGCCTGGCTACCCTCTGGTGGTAGAGCTGTTTCTTCCGGATGGTTCTGATGTGGGGCAAACCCTGCTGAGCAAGGGTCTGGTTCAGAAATCTCCCACGTTACGCGATGAAGACCAATCGTCCCAGTTCCACCCGAGAAAGCGAGGGCCTCGAAAAGCCAAGCCTTTTATATCAAAGCGATCAATAGCTGAAACCAGAGTGCATGCTCAAAAGATCAGTTCTCGAGAAGCTGAATGTGTACTGGCGCAAACGGAACTCCCTGGGGAGGAAATTCGGTTTGACGTCACTATCACACATATAGAGAGACCTGACTGTCTGTTTATTCAGCGGGTTCCACCCACTGAGATGGACAAGGGCTACGCTGACGATCCCGACCCTACCTTGGACGATGCAACCGAAGAGCTTCGTACACTGGAGGAGATTATGGCTAGGATAAACAGCCCGGAATATTTTAAGAAGTACACTCCATTGGCGACCGCAAAGAAAGGAATGTTATGTTGTGCTCGTTACACTGAAGATGACATGTGGTACAGAGCTCAAATTCAATCAATTGAACATCAGAGGCCTCTGGAGGTCAAGGTACTATACGTGGATTATGGCACAACTGAAGTACTTAAGGCGGACAGGTTGCGGGGCTTTCCATCGGAGCTTCTGGATTTGCCGGTTCAAGCCACACGTTGTTTTCTTGCCGACATTAGGCCACCAGACACAACAGATGGACCAATGATGGATGACAATGGCTGGCCTGTGAACTCTATGGAGACGCTCATTCAGCTGGTAGCCGGCAAGAAACTTGTCGCAAAAGTACTGTTTAGTGGACCACCAGCTAGTGTGATGTTATACGAACATACAGTGAGAGATGACGGATGCATCGAGGAATTTTCCATAGGGTTGCTCTTGGCTCAAAGAGGTCTGGCGAAGAGTGTGAACTATGAAGAACCCGTTTACGCAGAATCAGACCCTCTCACCGAAGAAAGCTGTGAATCGGAGGAGAAAACTTTGGAGTTTCAAGAATCCGAGTTGAAATTTACATCAGAGCAGAGATTAGAGATGAGCGCGGAGACCAAAGCAGATTCTTCGTCGATTGATTTGTTGGACAAAATTCCCACTCCTGAACGTAACTTTCCTCCCACAAAACAACTGTTAAAACCAGCAGAATTCACAGCAAAGGTTACGGATACAGTTTCTGGGAACAGTGATCCAGAAGTTAAGCAAACAGAACCCAGTCTCGATGGGGTTGAAGCTTCTTCGCAAACAACAGAAGGAGTCAAGTCGCGCGATGAAAAAGAGACAGTATCACCGCCTGTGACGTCAGCACCCAAGGCGGAAGTGACGTCAGCAAATAAAAAGCCGAGTTCAGTTGAAGTGAACGAAGATTCCTTAGAGTCCGCTGTATAA

Transcript

rna-Spis3995_mrna

GCCTCGCAAGCGCAAAGGAAGATAAAAGGAGACAATTTCTTAACTACCTTTTTCGCCTCTGTTATGCAGCGTACACCGACTTGCCAGAATTGCTGCAAAAGCTACGGCTTTAAAGATGTGTCCAAACCAATTGGAAATCGCATCCCCTTACTTTTGGACTGTGGCCACACTTTTTGTGAAGGCTGCATCACTAAATGGGCCAGACTACAAAAGACCTGGGTGTTATGTTCAGAATGTCAACACCCCACACCACTAACAATTGAAGGAGAGAGGGGAGTTAGGGCCATTCCACCTAATATCTACCTGTTAGGAGTGATGACCAACTCTAAAAGAGCTTCTTATCGCACtgATGTTCAAAAGCCTGGTTGCTCAAAGCTTGGGACAAAAGCTGGTTTGCAGAGAGCAATAAATCAGTTTGCACGAGAAAAGAAGGCTGAACTAATGAAACTTGACACTGATGTAAAGTGTGAAGAGTGCTCCAGAGCAACAGCCACAAGCAGTTGCAGCAAGTGTGAAACAGTGTACTGCAGTGCTTGTTTTGAGAGAgtgcATTCatattctgttgctttgaggAAACATGTTCCTTTGCCTgttacaaagaaaaaAACTGAGACAGCTGTTGGGTGTCCTGATCACAATAACAGACCTCTGGAGTTTTATGATAAGGATGATGGTCAGCCTGTGTGTTCACACTGTGTTGTTACAGGACAGAGACAAACACATGCTGTTGTACCCCTAGATGAAATcGCTAAAGAAATCCAAGATCAATTCAAGACTTCAGTTGAGGAAGTGGCTCCAATAATCAAGCATCTGGACAAGTCAGTTCAGATAATTTGTAAAGCACTTCCAGCAGTTAAggctgaaaagaataaaattattaatgACATCAGGGAACACTTTCAGATGTTATATTCTGCTTTACAGACAAGAGAGCAATCACTGATCAAAGAAGTTGAATTAAATCACAATGGGGAAAAGATTCTAGAGAAGATGCGAGAAGAGGTTGCGGACAATTTGCGGAAAGCAAGAGATTATGTTTATGATGTAGACCGTATGATTGGACAGCCACAGACTTTGATTGACTATGCTAAAAAGTTAAGAAGTGAGTTGGAAAGTGTAAAAGAGATGCTGTGCTGTGCTGTAAAAGTGATATCACATGAATATCAAATAAGGTTTGAAACTGGAGGAGAGATGAAGGAGAGAATCTCTGAGTATGGTTCTGTTTTCACAGATGGCTGTGCAAGATTTGAGATGAAAAAACTGAGTGAAATGAATGAGGAAGAGTTGGAACTAGAAAGTGATAACTCAGAACAGGAGCTTGTGAATGCCCAAGAAGAACAAGAAGACCCTCCGGATACTGAGCCATCTGTTCCAAGAGTGCAGCATGAGAGGACACCACAATCAATCACTGCCTCCAGGATACTTAAAACAAGTCTTGCGTATCGTCATGAACTAGTTCTTGTGACCCATATCAGAGATCCTTGTCAGTTCATGATTCAAAGAGTAGCTGACCTTGAACAACTCCAGATCATGATGAATGTCATTAACATGTACTGCGACAGCACAGAGAATGTTCATGATCTTCTCTATGATGTCAAGTTTGGTGACCTGTGTTGTGCTCAGTTTACAACTGATAATCAGTGGTACAGAGCTCGCATCAAGACTGCATATTCTCCAGCACATCCCAACACTGTACCTACACTTGAGAATAATCTTTGTGTTGAGGTGCAATACATAGATTATGGAAACAGCGAGTGGCTGCCTCTAAGCAGGTTGAGAAAGATGAAAGCAGAATTTCTAAATGTTCCTGAACTTGGAGAATGTTGCTGTTTGGCAGAAATTGTGCCTCCATTCcagGAGGAAAAGTGGCCACCCAAAGCAGTAAAGGCATTTGGAAGTCTTACTGGGGATAAACCTTTGTTGATGACAGTGGTTGGAAGGAAGGGAAATAAGCTGGTGGTTGACTTGCGACGTCCTGAAGATGATGAACCAACTCAAGACGATGACAGACCTGTGTCTGTTCGTGATGCCCTTGTTTTCTTGGAAGTGGCTCGTTTCTCTTCTCCTGCCTCAAAACCTACAGGCATTTTCTTTCCGAAGAAGACCTACAAAGAAGCTTGTCATATCGAGGAAGGAGCGTTTGTGGATGTGCTTGTTACACATATTGCCGCCCCTGATGAAATTTATATGCAAAAGCTGTGCAGTGAAGAGACAACAGAGCTACAACATATTATGGAGGAGATGAGCAAGATGTTTGGCGGAAGGAGGCGTGGGACCGAGTGGAGTGTCCCGTGGCCTTACAAGGGTCTTGTTTGTGCGGCGAGATTCACAGAAGACAAAATTTGGTACAGAGCTCTTGTTACGGcTGTAAACAGCGATGAAACCGTAGACGTGACGTATGTAGACTTTGGAAACTctgaaaaattgacattttccgAGATCAGGAAACTTCCTGACATGTTTCTGAGACTTCCAAAGCAGGCATTACCAGTTTGTCTCGTGGATATCAAACCAATTGGGGAGGAATGGCAGGTGCAGgatcaagaaaatatttcgaccCTATTGCTGAATAGATCGTTGGTGATTGATGTGAAAGGGGTTGTTGATGAAAAGATGTCGGTTTTGCTGTTTGACACCACGGGCGCTCGGGATGTTTGTATCAATCAGTTTCTTGTGCAACATGGTTATTGCCAGACGGCTGGACTTGGCATTGTTAAGAGCCCAGATGAACTAGCAATTGAAAGTCAGAACGCGAGAGAGAACAAGGGAAATGAAGGTCAACCTGAACAGACTGTAGAGGTTACAGAAAGCATGCAGGAAACTGCCAACGAACCTGACACTGAACAGGAGAAGGAGAGCCAAGCTAGTTCATTAACGGAAGAAGACAGGGCTCTGTCTGAAAGTAAAGCGGAGTCTCAAGCTAGTGAAACATCCAGCGCCTCCATTGATTACAAGGAGTTGAAATACAAGCCAGCAGCAATACCGGAAACGAATAAATTCCAAGCCGGTGTTACGTTTGTGGATTCACATGGATATGTGTATGCTCAAGAAGTGAAGGAAGGTGACCGTACGTTGATAAACATCATGGCAACCTTGCTAGAGAGATACGGCAAAAGTGAGAACCAATCAGGAGCACCTTCTGATGTGACGTCATTGTTCCCAGGCCTCCCGTGCGTTGCTCAGTTCGCAGAGGATGGCATGTGGTATCGTGCCTCAGTGATAAAAGTCGTGGAGGATAAAGTAGAAGTTAGCTATGTTGACTTTGGAAATTCGGAAGTTGTGCCCCTGTCTGCGATAAGACAAGAAATGCCGTTTATGGAGGTTCCTCACCAATGCCTTCAGCTGGTTTTGCGAGGCATTGAACCTAAAACCAGTGATGGGCATTGGCCACCAGAAGCCATCCGTGCTCTGTCTCAAGCTGTCGTGGGTCAGGACTGTATGGCTACAATCAGGGGCGATAAACTGCCTGGCTACCCTCTGGTGGTAGAGCTGTTTCTTCCGGATGGTTCTGATGTGGGGCAAACCCTGCTGAGCAAGGGTCTGGTTCAGAAATCTCCCACGTTACGCGATGAAGACCAATCGTCCCAGTTCCACCCGAGAAAGCGAGGGCCTCGAAAAGCCAAGCCTTTTATATCAAAGCGATCAATAGCTGAAACCAGAGTGCATGCTCAAAAGATCAGTTCTCGAGAAGCTGAATGTGTACTGGCGCAAACGGAACTCCCTGGGGAGGAAATTCGGTTTGACGTCACTATCACACATATAGAGAGACCTGACTGTCTGTTTATTCAGCGGGTTCCACCCACTGAGATGGACAAGGGCTACGCTGACGATCCCGACCCTACCTTGGACGATGCAACCGAAGAGCTTCGTACACTGGAGGAGATTATGGCTAGGATAAACAGCCCGGAATATTTTAAGAAGTACACTCCATTGGCGACCGCAAAGAAAGGAATGTTATGTTGTGCTCGTTACACTGAAGATGACATGTGGTACAGAGCTCAAATTCAATCAATTGAACATCAGAGGCCTCTGGAGGTCAAGGTACTATACGTGGATTATGGCACAACTGAAGTACTTAAGGCGGACAGGTTGCGGGGCTTTCCATCGGAGCTTCTGGATTTGCCGGTTCAAGCCACACGTTGTTTTCTTGCCGACATTAGGCCACCAGACACAACAGATGGACCAATGATGGATGACAATGGCTGGCCTGTGAACTCTATGGAGACGCTCATTCAGCTGGTAGCCGGCAAGAAACTTGTCGCAAAAGTACTGTTTAGTGGACCACCAGCTAGTGTGATGTTATACGAACATACAGTGAGAGATGACGGATGCATCGAGGAATTTTCCATAGGGTTGCTCTTGGCTCAAAGAGGTCTGGCGAAGAGTGTGAACTATGAAGAACCCGTTTACGCAGAATCAGACCCTCTCACCGAAGAAAGCTGTGAATCGGAGGAGAAAACTTTGGAGTTTCAAGAATCCGAGTTGAAATTTACATCAGAGCAGAGATTAGAGATGAGCGCGGAGACCAAAGCAGATTCTTCGTCGATTGATTTGTTGGACAAAATTCCCACTCCTGAACGTAACTTTCCTCCCACAAAACAACTGTTAAAACCAGCAGAATTCACAGCAAAGGTTACGGATACAGTTTCTGGGAACAGTGATCCAGAAGTTAAGCAAACAGAACCCAGTCTCGATGGGGTTGAAGCTTCTTCGCAAACAACAGAAGGAGTCAAGTCGCGCGATGAAAAAGAGACAGTATCACCGCCTGTGACGTCAGCACCCAAGGCGGAAGTGACGTCAGCAAATAAAAAGCCGAGTTCAGTTGAAGTGAACGAAGATTCCTTAGAGTCCGCTGTATAAGGAGATAAGAGGAGGAAGAAATTATTGtgaattttaaacatgaaaattattggaaatgactttttttgacaaaaaaaaaattattgatttaGTTTCGTTTTGCAGTTTTGCATTGcaggttttattgaaaaacttaCCTTTGGGCAGGAATTGTTTTTTCCCCTGAGGACGAAAATATTCCGTTTGTTTTGTACAGTTGCTTTGTACAGTAATTGTGTCAGCtgttatgaaaattaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039117 all species →	Family	RING finger protein 17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16442 all species →	RING FINGER PROTEIN 17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18405	TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.